## ## Divergently transcribed gene pairs ('DT-pairs') with evolutionarily conserved organization ## ## The following data present adjacent 'DT-pairs' with evolutionarily conserved organization. ## We analyzed 101 completely sequenced prokaryotic genomes, and extracted adjacent pairs with ## evolutionarily conserved bidirectional orientation - ignoring gene pairs if the coding regions ## overlap, or if both genes belong to the same orthologous group,i.e. if they are paralogs. ## (How orthologous groups have been derived is described in the Methods. (please see also Tatusov ## et al., Science 1997;278:631-7, and von Mering et al., Nucleic Acids Res. 2003;31:258-61.) ## ## ## ## The data has the following format: ## ## We clustered groups of orthologous DT-pairs. For each of these clusters, the first line ## provides information about the orthologous groups involved in a conserved 'DT-pair', ## its evolutionary conservation, and the functional annotations (obtained from the COG database). ## The next lines show swissprot-identifiers for all proteins encoded from the respective DT-pairs. ## Furthermore, intergenic distances and species names are presented. The following lines briefly ## summarize the data format: ## ##orthologous_group_A<>orthologous_group_B - number_of_independent_clades_pair_was_observed_in - functional_annotation_A ** functional_annotation_B ## swissprot_idswissprot_id species_pair_is_present_in ## swissprot_idswissprot_id species_pair_is_present_in ## swissprot_idswissprot_id species_pair_is_present_in ## ... ## ## ## On the bottom of the file, we present additional pairs of orthologous groups which can be functionally ## linked by our method - the corresponding gene pairs are however redundant (and thus omitted). Usually, ## this implies that observed 'DT-pairs' comprise fused genes belonging to more than one orthologous group ## (i.e., several pairs of orthologous groups may be linked by just one 'DT-pair'). ## COG0230<>COG0593 - 16 - Ribosomal protein L34 ** ATPase involved in DNA replication initiation AAN65643<596>AAN65644 Pseudomonas putida RL34_RALSOQ8XTV4 Ralstonia solanacearum BAC08154<181>BAC08155 Synechococcus elongatus RL34_ECOLI<661>DNAA_SALTI Salmonella typhi CT18 AAN45204<676>AAN45205 Shigella flexneri RL34_NEIMA<288>DNAA_NEIMA Neisseria meningitidis A AAN53094<455>AAN53095 Shewanella oneidensis Q8KGG6<406>RL34_CHLTE Chlorobium tepidum DNAA_BUCAI<451>RL34_BUCAI Buchnera aphidicola APS Q8RDL6RL34_THETN Thermoanaerobacter tengcongensis AAO03598RL34_STAAM Staphylococcus epidermidis DNAA_UREPARL34_UREPA Ureaplasma parvum DNAA_BACSURL34_BACSU Bacillus subtilis Q97N35RL34_CLOAB Clostridium acetobutylicum Q8XPG2RL34_CLOPE Clostridium perfringens DNAA_ECO57<607>RL34_ECOLI Escherichia coli EDL933 DNAA_STAAMRL34_STAAM Staphylococcus aureus Mu50 DNAA_STAAMRL34_STAAM Staphylococcus aureus N315 AAN24462<319>AAN24463 Bifidobacterium longum Q8NUD8Q8NL50 Corynebacterium glutamicum DNAA_MYCLERL34_MYCLE Mycobacterium leprae BAC11957BAC15452 Oceanobacillus iheyhensis DNAA_YERPE<698>RL34_YERPE Yersinia pestis KIM DNAA_STAAMRL34_STAAM Staphylococcus aureus MW2 DNAA_XYLFARL34_XYLFA Xylella fastidiosa DNAA_PSEAERL34_PSEAE Pseudomonas aeruginosa Q8PEH5RL34_XANAC Xanthomonas campestris DNAA_NEIMB<292>RL34_NEIMA Neisseria meningitidis B DNAA_SALTY<661>RL34_ECOLI Salmonella typhimurium LT2 DNAA_PASMU<325>RL34_HAEIN Pasteurella multocida DNAA_MYCTURL34_MYCTU Mycobacterium tuberculosis H37Rv DNAA_ECOLI<608>RL34_ECOLI Escherichia coli K12 DNAA_ECO57<607>RL34_ECOLI Escherichia coli O157 DNAA_BACHDRL34_BACHD Bacillus halodurans Q8PRG2RL34_XANAC Xanthomonas axonopodis DNAA_BUCAP<419>RL34_BUCAP Buchnera aphidicola Schiz COG0477<>COG1309 - 10 - Permeases of the major facilitator superfamily ** Transcriptional regulator AAN57912<151>AAN57913 Streptococcus mutans Q9CJ75<195>Q9CJ74 Lactococcus lactis Q9CHV9<214>Q9CHV8 Lactococcus lactis P96675<204>P96676 Bacillus subtilis Q97TL4<1053>Q97TL3 Clostridium acetobutylicum Q8U7Y3<144>Q8U7Y2 Agrobacterium tumefaciens Wash BAC14725<318>BAC14726 Oceanobacillus iheyhensis BAC15124<140>BAC15125 Oceanobacillus iheyhensis Q9RL22<128>Q9RL21 Streptomyces coelicolor CAD55303<116>Q9RDR0 Streptomyces coelicolor Q9X8M3<159>Q9X8M4 Streptomyces coelicolor Q9ADP8<137>Q9ADP7 Streptomyces coelicolor Q9Z563<66>Q9Z562 Streptomyces coelicolor O69986<188>CAD55235 Streptomyces coelicolor O54179<148>O54180 Streptomyces coelicolor Q9KXZ7<237>CAD55397 Streptomyces coelicolor Q97VV2<265>Q97VV1 Sulfolobus solfataricus Q9I462<119>Q9I461 Pseudomonas aeruginosa Q9I1K4<147>Q9I1K3 Pseudomonas aeruginosa Q9HY47<365>Q9HY46 Pseudomonas aeruginosa AAN33326<1435>AAN33327 Brucella suis Q8XTK1<168>Q8XTK0 Ralstonia solanacearum BAC47589<365>BAC47590 Bradyrhizobium japonicum BAC50386<87>BAC50387 Bradyrhizobium japonicum BAC52086<100>BAC52087 Bradyrhizobium japonicum Q98KH6<189>Q98KH5 Mesorhizobium loti Q98I66<173>Q98I65 Mesorhizobium loti Q98G70<194>Q98G69 Mesorhizobium loti Q98ER5<19>Q98ER4 Mesorhizobium loti Q985Z1<120>Q985Z0 Mesorhizobium loti SMVA_SALTY<118>Q8ZPE2 Salmonella typhimurium LT2 Q97N19<165>Q97N18 Clostridium acetobutylicum Q97DJ6<193>Q97DJ5 Clostridium acetobutylicum Q97TR9<133>Q97TR8 Clostridium acetobutylicum Q97TH4<200>Q97TH3 Clostridium acetobutylicum QACR_STAAM<178>QACA_STAAM Staphylococcus aureus Mu50 Q8U893<89>Q9Z479 Agrobacterium tumefaciens Wash Q8U7Y2<111>Q8U7Y3 Agrobacterium tumefaciens Cereon Q9RJX7<102>Q9RJX6 Streptomyces coelicolor Q9I429<158>Q9I428 Pseudomonas aeruginosa Q8YI41<295>Q8YI40 Brucella melitensis BAC53222<1389>BAC53224 Bradyrhizobium japonicum Q983S2<251>Q983S1 Mesorhizobium loti Q92WL6<98>Q92WL5 Sinorhizobium meliloti Q930S6<93>Q930S5 Sinorhizobium meliloti Q8Z730<118>Q8Z729 Salmonella typhi CT18 COG1028<>COG1309 - 9 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Transcriptional regulator BAC19147<119>BAC19148 Corynebacterium efficiens Q8Y594<182>Q8Y593 Listeria monocytogenes Q929J7<185>Q929J6 Listeria innocua Q8NMW9<133>Q8NMW8 Corynebacterium glutamicum Q9ZBM5<95>Q9CCW8 Mycobacterium leprae Q8UBE2<88>Q8UBE1 Agrobacterium tumefaciens Wash BAC12948<148>BAC12949 Oceanobacillus iheyhensis BAC15139<168>BAC15140 Oceanobacillus iheyhensis BAC15266<187>BAC15267 Oceanobacillus iheyhensis Q9S1Q1<346>Q9S1Q0 Streptomyces coelicolor Q9RJM4<10>Q9RJM3 Streptomyces coelicolor Q9K486<95>Q9K485 Streptomyces coelicolor Q9EX62<63>Q9EX61 Streptomyces coelicolor Q99PY9<181>Q99QK8 Streptomyces coelicolor AAN83724<141>AAN83725 Escherichia coli O6 Q8PBR2<71>Q8PBR1 Xanthomonas campestris Q98ML3<101>Q98ML2 Mesorhizobium loti Q98J40<108>Q98J38 Mesorhizobium loti Q98GE0<69>Q98GD9 Mesorhizobium loti Q8Z7A1<78>Q8Z7A0 Salmonella typhi CT18 Q9KAZ2<205>Q9KAZ1 Bacillus halodurans Q8PNB3<71>Q8PNB2 Xanthomonas axonopodis Q9CDH1<179>Q9CDH0 Lactococcus lactis YXAF_BACSU<131>O32291 Bacillus subtilis Q8Y3M1<161>Q8Y3M0 Listeria monocytogenes Q926U3<153>Q926U2 Listeria innocua Q8UK34<78>Q8UK33 Agrobacterium tumefaciens Wash Q8UBE1<73>Q8UBE2 Agrobacterium tumefaciens Cereon Q8UK34<51>Q8UK33 Agrobacterium tumefaciens Cereon BAC12284<202>BAC12285 Oceanobacillus iheyhensis Q9RI62<117>Q9RI61 Streptomyces coelicolor Q9K4H1<22>Q9K4H0 Streptomyces coelicolor Q9KXT8<95>Q9KXT7 Streptomyces coelicolor Q9FBX5<52>Q9FBX4 Streptomyces coelicolor Q99QK8<181>Q99PY9 Streptomyces coelicolor AAN68488<90>AAN68489 Pseudomonas putida BAC46517<216>BAC46518 Bradyrhizobium japonicum Q92WA7<105>Q92WA6 Sinorhizobium meliloti Q8ZP73<78>Q8ZP72 Salmonella typhimurium LT2 AAN45658<71>AAN45659 Shigella flexneri AAN45699<5>AAN45700 Shigella flexneri O53612<103>O53613 Mycobacterium tuberculosis CDC1551 O53323<93>O53324 Mycobacterium tuberculosis CDC1551 O53612<103>O53613 Mycobacterium tuberculosis H37Rv O53323<93>O53324 Mycobacterium tuberculosis H37Rv COG0583<>COG2855 - 9 - Transcriptional regulator ** Predicted membrane protein Q9CII6<164>Q9CII5 Lactococcus lactis YEIE_ECOLI<99>YEIH_ECOLI Escherichia coli EDL933 Q8Y5B9<106>Q8Y5B8 Listeria monocytogenes Q929M5<106>Q929M4 Listeria innocua Q8ZGI9<640>AAM86429 Yersinia pestis KIM YEIE_ECOLI<99>AAN81149 Escherichia coli O6 Q9HTI2<108>Q9HTI1 Pseudomonas aeruginosa Q8YEG5<53>Q8YEG4 Brucella melitensis AAN69260<113>AAN69261 Pseudomonas putida Q8Y0D4<93>Q8Y0D3 Ralstonia solanacearum Q92YC8<205>Q92YC7 Sinorhizobium meliloti Q8Z595<121>Q8Z594 Salmonella typhi CT18 Q8ZNK8<121>Q8ZNK7 Salmonella typhimurium LT2 AAN43761<198>YEIH_ECOLI Shigella flexneri YEIE_ECOLI<99>YEIH_ECOLI Escherichia coli K12 YEIE_ECOLI<99>YEIH_ECOLI Escherichia coli O157 AAO05951<115>AAO05952 Staphylococcus epidermidis AAN59657<105>AAN59658 Streptococcus mutans Q8NUC4<71>Q8NUC3 Corynebacterium glutamicum Q8UHK9<208>Q8UHK8 Agrobacterium tumefaciens Wash Q8UHK9<250>Q8UHK8 Agrobacterium tumefaciens Cereon BAC15362<115>BAC15363 Oceanobacillus iheyhensis Q9PNU1<113>Q9PNU0 Campylobacter jejuni AAN28985<116>AAN28986 Brucella suis Q8ZGJ0<658>Q8ZGI9 Yersinia pestis CO92 COG0477<>COG0583 - 8 - Permeases of the major facilitator superfamily ** Transcriptional regulator YYBF_BACSU<229>YYBE_BACSU Bacillus subtilis Q8XEC5<79>Q8X654 Escherichia coli EDL933 Q8X5A1<152>Q8XE20 Escherichia coli EDL933 Q8U8V0<124>Q8U8V1 Agrobacterium tumefaciens Cereon Q8U998<91>Q8U999 Agrobacterium tumefaciens Cereon Q8ZDU7<394>Q8ZDU8 Yersinia pestis KIM Q8ZE01<290>Q8ZE02 Yersinia pestis KIM AAM85671<168>AAM85672 Yersinia pestis KIM Q8ZG16<136>Q8ZG17 Yersinia pestis KIM Q9AK30<64>Q9AK29 Streptomyces coelicolor Q9I3T2<105>Q9I3T1 Pseudomonas aeruginosa Q9I260<111>Q9I259 Pseudomonas aeruginosa Q9I201<255>Q9I200 Pseudomonas aeruginosa AAN33638<105>AAN33639 Brucella suis AAN70151<131>AAN70152 Pseudomonas putida Q8Y0F1<312>Q8Y0F0 Ralstonia solanacearum BAC49227<93>BAC49228 Bradyrhizobium japonicum BAC50761<114>BAC50762 Bradyrhizobium japonicum Q98B85<145>Q98B84 Mesorhizobium loti Q92SY1<131>Q92SY0 Sinorhizobium meliloti Q8XF08<126>Q8XG81 Salmonella typhi CT18 Q8XEK9<162>Q8Z557 Salmonella typhi CT18 Q8Z4K9<116>Q8Z4K8 Salmonella typhi CT18 Q8Z483<88>Q8Z482 Salmonella typhi CT18 Q8ZPP0<113>Q8ZPN9 Salmonella typhimurium LT2 Q8XH12<120>Q8ZPK8 Salmonella typhimurium LT2 Q8XF08<126>Q8XG81 Salmonella typhimurium LT2 Q8XEK9<162>Q8ZNG8 Salmonella typhimurium LT2 Q8ZN22<116>Q8ZN21 Salmonella typhimurium LT2 Q8ZMH0<88>Q8ZMG9 Salmonella typhimurium LT2 AAO07532<104>AAO07533 Vibrio vulnificus AAO09450<140>AAO09451 Vibrio vulnificus AAO09514<176>AAO09515 Vibrio vulnificus AAN55407<116>AAN55408 Shewanella oneidensis AAN57516<116>AAN57517 Shewanella oneidensis Q8XEC5<79>Q8X654 Escherichia coli O157 Q8X5A1<152>Q8XE20 Escherichia coli O157 BAC17249<341>BAC17250 Corynebacterium efficiens BAC19577<189>BAC19579 Corynebacterium efficiens Q8X4P9<107>Q8X784 Escherichia coli EDL933 YDHB_ECOLI<113>Q8X624 Escherichia coli EDL933 Q8NT88<276>Q8NT87 Corynebacterium glutamicum Q8NLL4<189>Q8NLL3 Corynebacterium glutamicum Q8U999<91>Q8U998 Agrobacterium tumefaciens Wash Q8U8V1<124>Q8U8V0 Agrobacterium tumefaciens Wash Q9L1T1<279>Q9L1T0 Streptomyces coelicolor AAN80446<107>AAN80447 Escherichia coli O6 AAN80513<113>AAN80514 Escherichia coli O6 Q9I432<108>Q9I431 Pseudomonas aeruginosa Q9HUE0<176>Q9HUD9 Pseudomonas aeruginosa Q9HTX2<97>Q9HTX1 Pseudomonas aeruginosa Q8YBR6<93>Q8YBR5 Brucella melitensis AAN70099<105>AAN70100 Pseudomonas putida AAN70636<76>AAN70637 Pseudomonas putida Q8Y186<100>Q8Y185 Ralstonia solanacearum Q8XZC9<65>Q8XZC8 Ralstonia solanacearum Q8XWH6<66>Q8XWH5 Ralstonia solanacearum Q8XPR7<292>Q8XPR6 Ralstonia solanacearum Q8PDN4<17>Q8PDN3 Xanthomonas campestris Q8PD51<101>Q8PD50 Xanthomonas campestris BAC45749<123>BAC45750 Bradyrhizobium japonicum BAC51833<155>BAC51834 Bradyrhizobium japonicum Q98L81<130>Q98L80 Mesorhizobium loti Q98IT2<92>Q98IT1 Mesorhizobium loti Q98HN8<190>Q98HN7 Mesorhizobium loti Q986E4<401>Q986E3 Mesorhizobium loti Q986D8<120>Q986D7 Mesorhizobium loti Q8Z6X7<120>Q8XH12 Salmonella typhi CT18 Q8Z6P0<113>Q8Z6N9 Salmonella typhi CT18 AAN43266<113>AAN43267 Shigella flexneri Q8ZG17<136>Q8ZG16 Yersinia pestis CO92 Q8ZE02<290>Q8ZE01 Yersinia pestis CO92 Q8ZDU8<394>Q8ZDU7 Yersinia pestis CO92 Q9KVS1<63>Q9KVS0 Vibrio cholerae Q9KS69<87>Q9KS68 Vibrio cholerae Q9KRL9<85>Q9KRL8 Vibrio cholerae Q9KNH9<129>Q9KNH8 Vibrio cholerae Q9KN83<90>Q9KN82 Vibrio cholerae AAO08347<423>AAO08348 Vibrio vulnificus AAO11119<95>AAO11120 Vibrio vulnificus AAN54967<179>AAN54968 Shewanella oneidensis YNFL_ECOLI<107>YNFM_ECOLI Escherichia coli K12 YDHB_ECOLI<113>YDHC_ECOLI Escherichia coli K12 Q8X4P9<107>Q8X784 Escherichia coli O157 YDHB_ECOLI<113>Q8X624 Escherichia coli O157 Q9KBY7<116>Q9KBY6 Bacillus halodurans Q8PQK7<16>Q8PQK6 Xanthomonas axonopodis Q8PQ24<98>Q8PQ23 Xanthomonas axonopodis COG0583<>COG1028 - 8 - Transcriptional regulator ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Q93IY9<95>Q93IY8 Streptomyces coelicolor Q9I6V1<117>Q9I6V0 Pseudomonas aeruginosa Q9I2R9<132>Q9I2R8 Pseudomonas aeruginosa AAN68114<114>AAN68115 Pseudomonas putida Q8XYM9<133>Q8XYM8 Ralstonia solanacearum Q8PAP2<309>Q8PAP1 Xanthomonas campestris Q8P3A2<59>Q8P3A1 Xanthomonas campestris BAC47431<109>BAC47432 Bradyrhizobium japonicum BAC51201<214>BAC51202 Bradyrhizobium japonicum BAC52830<118>BAC52831 Bradyrhizobium japonicum Q98K91<131>Q98K90 Mesorhizobium loti Q98IC0<97>Q98IB9 Mesorhizobium loti Q98H66<110>Q98H65 Mesorhizobium loti Q98C65<291>Q98C64 Mesorhizobium loti Q987H2<207>Q987H1 Mesorhizobium loti Q92UG7<95>Q92UG6 Sinorhizobium meliloti Q92N94<113>Q92N93 Sinorhizobium meliloti Q92Y10<216>Q92Y09 Sinorhizobium meliloti Q92XY4<786>Q92XY3 Sinorhizobium meliloti AAO07981<134>AAO07982 Vibrio vulnificus Q8PME9<309>Q8PME8 Xanthomonas axonopodis Q8YZV3<86>Q8YZV2 Nostoc sp PCC 7120 O32185<134>YUST_BACSU Bacillus subtilis Q8U7T3<89>Q8U7T2 Agrobacterium tumefaciens Wash Q8UJT4<0>Q8UJT3 Agrobacterium tumefaciens Cereon Q9RIT7<240>Q9RIT6 Streptomyces coelicolor Q9I4Q8<49>Q9I4Q7 Pseudomonas aeruginosa AAN67471<119>AAN67472 Pseudomonas putida Q8XU62<108>Q8XU61 Ralstonia solanacearum Q8XSM1<101>Q8XSM0 Ralstonia solanacearum Q8P5X1<35>Q8P5X0 Xanthomonas campestris BAC49256<78>BAC49257 Bradyrhizobium japonicum BAC49285<27>BAC49286 Bradyrhizobium japonicum Q98JQ5<128>Q98JQ4 Mesorhizobium loti Q98JE4<104>Q98JE3 Mesorhizobium loti Q98H11<148>Q98H10 Mesorhizobium loti Q98BJ8<101>Q98BJ7 Mesorhizobium loti Q984Z1<94>Q984Y9 Mesorhizobium loti Q92W70<123>Q92W69 Sinorhizobium meliloti Q8PR80<126>Q8PR79 Xanthomonas axonopodis COG0845<>COG1309 - 8 - Membrane-fusion protein ** Transcriptional regulator Q8YYN7<331>Q8YYN6 Nostoc sp PCC 7120 ACRA_ECOLI<142>Q8X5D3 Escherichia coli EDL933 Q9AA03<294>Q9AA02 Caulobacter crescentus Q8U9D1<306>Q8U9D0 Agrobacterium tumefaciens Wash Q8U881<41>Q8U882 Agrobacterium tumefaciens Cereon Q8ZC88<145>Q8ZC89 Yersinia pestis KIM AAN79059<106>ACRR_ECOLI Escherichia coli O6 Q9RG60<165>Q9RG61 Pseudomonas aeruginosa Q9HXW3<96>Q9HXW2 Pseudomonas aeruginosa Q51395<161>NFXB_PSEAE Pseudomonas aeruginosa Q8YF92<179>Q8YF91 Brucella melitensis AAN30009<141>AAN30010 Brucella suis AAN67009<258>AAN67010 Pseudomonas putida Q8Y3G9<529>Q8Y3G8 Ralstonia solanacearum Q8P7C8<131>Q8P7C7 Xanthomonas campestris BAC49137<202>BAC49138 Bradyrhizobium japonicum Q98HK8<127>Q98HK7 Mesorhizobium loti Q92Y51<66>Q92Y50 Sinorhizobium meliloti Q9JY66<403>Q9JY65 Neisseria meningitidis B Q8Z8T7<142>Q8XEW7 Salmonella typhi CT18 Q8ZRA6<142>Q8XEW7 Salmonella typhimurium LT2 AAN42063<106>ACRR_ECOLI Shigella flexneri Q9JT50<408>Q9JT49 Neisseria meningitidis A AAN56486<156>AAN56487 Shewanella oneidensis ACRA_ECOLI<142>ACRR_ECOLI Escherichia coli K12 ACRA_ECOLI<142>Q8X5D3 Escherichia coli O157 Q8PIQ1<129>Q8PIQ0 Xanthomonas axonopodis Q8YPB9<186>Q8YPB8 Nostoc sp PCC 7120 ENVR_ECOLI<399>Q8X4W2 Escherichia coli EDL933 Q9A3T4<90>Q9A3T3 Caulobacter crescentus Q8U882<98>Q8U881 Agrobacterium tumefaciens Wash Q8U9D0<36>Q8U9D1 Agrobacterium tumefaciens Cereon AAN82470<399>AAN82471 Escherichia coli O6 Q8YHB1<195>Q8YHB0 Brucella melitensis AAN29239<173>AAN29240 Brucella suis AAN67136<251>AAN67137 Pseudomonas putida AAN68424<92>AAN68425 Pseudomonas putida Q98FR8<95>Q98FR7 Mesorhizobium loti Q92WI6<144>Q92WI5 Sinorhizobium meliloti Q92NV1<299>Q92NV0 Sinorhizobium meliloti Q8ZLN6<414>Q8ZLN5 Salmonella typhimurium LT2 Q8ZC89<145>Q8ZC88 Yersinia pestis CO92 AAO07165<207>AAO07166 Vibrio vulnificus AAN56275<191>AAN56276 Shewanella oneidensis ENVR_ECOLI<399>ACRE_ECOLI Escherichia coli K12 ENVR_ECOLI<399>Q8X4W2 Escherichia coli O157 COG0583<>COG0697 - 8 - Transcriptional regulator ** Permeases of the drug/metabolite transporter (DMT) superfamily YOAU_BACSU<101>YOAV_BACSU Bacillus subtilis YVBU_BACSU<100>YVBV_BACSU Bacillus subtilis Q8UDP3<199>Q8UDP2 Agrobacterium tumefaciens Wash Q8UDP3<139>Q8UDP2 Agrobacterium tumefaciens Cereon Q9K3X6<75>CAD55171 Streptomyces coelicolor Q9I480<100>Q9I479 Pseudomonas aeruginosa BAC46415<68>BAC46416 Bradyrhizobium japonicum Q98G29<213>Q98G28 Mesorhizobium loti Q983L5<114>Q983L4 Mesorhizobium loti Q92TS6<155>Q92TS5 Sinorhizobium meliloti Q92Y24<13>Q92Y23 Sinorhizobium meliloti AAO08335<268>AAO08336 Vibrio vulnificus AAN53380<109>AAN53381 Shewanella oneidensis YRDR_BACSU<126>P71025 Bacillus subtilis Q97K74<146>Q97K73 Clostridium acetobutylicum Q9RDH1<149>Q9RDH0 Streptomyces coelicolor Q8Y1S5<198>Q8Y1S4 Ralstonia solanacearum Q8P7I5<171>Q8P7I4 Xanthomonas campestris Q98HR3<99>Q98HR2 Mesorhizobium loti Q98DR8<206>Q98DR7 Mesorhizobium loti Q9KKY7<101>Q9KKY6 Vibrio cholerae Q8PIV5<171>Q8PIV4 Xanthomonas axonopodis COG0260<>COG0795 - 8 - Leucyl aminopeptidase ** Predicted permeases AMPA_ECOLI<267>YJGP_ECOLI Escherichia coli EDL933 AAM84333<280>Q8ZBH4 Yersinia pestis KIM AMPA_ECOLI<267>YJGP_ECOLI Escherichia coli O6 AMPA_XYLFA<110>Q9PH07 Xylella fastidiosa AMPA_BRUME<444>Q8YG98 Brucella melitensis AMPA_RALSO<115>Q8XWQ7 Ralstonia solanacearum AMPA_XANCP<108>Q8PCR3 Xanthomonas campestris AMPA_SALTI<395>Q8Z115 Salmonella typhi CT18 AMPA_NEIMA<170>Q9JTI7 Neisseria meningitidis A AAO09915<265>AAO09916 Vibrio vulnificus AAN54433<256>AAN54434 Shewanella oneidensis AMPA_PASMU<119>Q9CP61 Pasteurella multocida AMPA_ECOLI<267>YJGP_ECOLI Escherichia coli K12 AMPA_ECOLI<267>YJGP_ECOLI Escherichia coli O157 Q9A7N0<228>AMPA_CAUCR Caulobacter crescentus BAC24604<165>BAC24605 Wigglesworthia brevipalpis Q8UGD0<223>AMPA_AGRT5 Agrobacterium tumefaciens Cereon BAC49372<287>BAC49373 Bradyrhizobium japonicum Q984S2<354>AMPA_RHILO Mesorhizobium loti Q92QY8<314>AMPA_RHIME Sinorhizobium meliloti YJGP_ECOLI<330>AAN45648 Shigella flexneri Q8ZBH4<280>AMPA_YERPE Yersinia pestis CO92 Q9KP75<194>AMPA_VIBCH Vibrio cholerae YJGP_HAEIN<108>AMPA_HAEIN Haemophilus influenzae Q8PGR1<108>AMPA_XANAC Xanthomonas axonopodis COG0702<>COG1733 - 8 - Predicted nucleoside-diphosphate-sugar epimerases ** Predicted transcriptional regulators Q8YTW5<90>Q8YTW4 Nostoc sp PCC 7120 Q9CDP9<227>Q9CDP8 Lactococcus lactis Q9KZ31<94>Q9RKN4 Streptomyces coelicolor Q8PDL4<137>Q8PDL3 Xanthomonas campestris Q8Z155<88>Q8XGE7 Salmonella typhi CT18 Q8ZK74<88>Q8XGE7 Salmonella typhimurium LT2 Q8ZFP8<160>Q8ZFP7 Yersinia pestis CO92 Q8PQI4<137>Q8PQI3 Xanthomonas axonopodis Q8NQQ5<107>Q8NQQ4 Corynebacterium glutamicum Q8UGT7<156>Q8UGT6 Agrobacterium tumefaciens Wash Q9PGQ8<115>Q9PGQ7 Xylella fastidiosa Q8XRI8<131>Q8XRI7 Ralstonia solanacearum Q98KM1<137>Q98KM0 Mesorhizobium loti Q92NU0<165>Q92NT9 Sinorhizobium meliloti COG0583<>COG1741 - 7 - Transcriptional regulator ** Pirin-related protein YHAJ_ECOLI<105>YHAK_ECO57 Escherichia coli EDL933 Q8ZB79<262>Q8ZB78 Yersinia pestis KIM AAM85733<243>AAM85734 Yersinia pestis KIM AAN82306<105>AAN82307 Escherichia coli O6 Q9I164<101>YO18_PSEAE Pseudomonas aeruginosa Q8Z3L0<105>Q8Z3K9 Salmonella typhi CT18 Q8ZLW7<105>Q8ZLW6 Salmonella typhimurium LT2 AAN44618<105>AAN44619 Shigella flexneri Q8ZB79<262>Q8ZB78 Yersinia pestis CO92 YHAJ_ECOLI<105>YHAK_ECOLI Escherichia coli K12 YHAJ_ECOLI<105>YHAK_ECO57 Escherichia coli O157 YH73_SYNY3<130>P73624 Synechocystis sp PCC 6803 YE73_CAUCR<126>Q9A889 Caulobacter crescentus Q8Y1Z6<155>Q8Y1Z5 Ralstonia solanacearum Q8XXA8<108>Q8XXA7 Ralstonia solanacearum Q8P9W6<138>Q8P9W5 Xanthomonas campestris Q930K6<103>Q930K5 Sinorhizobium meliloti Q8Z818<109>Q8XET3 Salmonella typhi CT18 Q8ZQD9<109>Q8XET3 Salmonella typhimurium LT2 Q8ZEL5<198>Q8ZEL4 Yersinia pestis CO92 Q8PLP6<135>Q8PLP5 Xanthomonas axonopodis COG0477<>COG1846 - 7 - Permeases of the major facilitator superfamily ** Transcriptional regulators O31471<113>O31472 Bacillus subtilis BAC18441<183>BAC18442 Corynebacterium efficiens Q8NLK9<29>Q8NLK8 Corynebacterium glutamicum Q9KYE9<146>Q9KYE8 Streptomyces coelicolor Q9HJ10<289>Q9HJ09 Thermoplasma acidophilum Q8XWZ4<165>Q8XWZ3 Ralstonia solanacearum BAC49115<75>BAC49116 Bradyrhizobium japonicum Q978Z4<237>Q978Z3 Thermoplasma volcanium P96708<311>P96709 Bacillus subtilis Q8NRI4<145>Q8NRI3 Corynebacterium glutamicum Q8UH48<148>Q8UH47 Agrobacterium tumefaciens Wash Q987Z5<59>Q987Z4 Mesorhizobium loti Q8Z718<1197>Q9RN46 Salmonella typhi CT18 COG0564<>COG1530 - 7 - Pseudouridylate synthases, 23S RNA-specific ** Ribonucleases G and E Q9PAB2<401>Q9PAB1 Xylella fastidiosa Q9HZM9<577>Q9HZM8 Pseudomonas aeruginosa Q8P8Z5<404>Q8P8Z4 Xanthomonas campestris Q9JX44<494>Q9JX43 Neisseria meningitidis A RLUC_VIBCH<612>Q9KQG8 Vibrio cholerae AAO11343<667>AAO11344 Vibrio vulnificus RLUC_HAEIN<373>RNE_HAEIN Haemophilus influenzae RNE_BUCAI<335>RLUC_BUCAI Buchnera aphidicola APS AAM85317<512>AAM85318 Yersinia pestis KIM Q8Y0K3<758>Q8Y0K2 Ralstonia solanacearum Q8ZQ17<574>Q8ZQ16 Salmonella typhimurium LT2 Q8ZFU2<575>Q8ZFU1 Yersinia pestis CO92 Q9CM52<417>RLUC_PASMU Pasteurella multocida Q8PKQ8<401>Q8PKQ7 Xanthomonas axonopodis RNE_BUCAP<310>RLUC_BUCAP Buchnera aphidicola Schiz COG1167<>COG3467 - 7 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs ** Predicted flavin-nucleotide-binding protein Q9RW29<656>Q9RW27 Deinococcus radiodurans Q9AKA2<36>Q9AKA1 Streptomyces coelicolor Q8XUR6<97>Q8XUR5 Ralstonia solanacearum BAC49419<76>BAC49420 Bradyrhizobium japonicum AAO07704<117>AAO07705 Vibrio vulnificus Q8YN33<99>Q8YN32 Nostoc sp PCC 7120 Q98JR3<6>Q98JR2 Mesorhizobium loti Q9KFA8<110>Q9KFA7 Bacillus halodurans COG0583<>COG1279 - 7 - Transcriptional regulator ** Lysine efflux permease Q9K4K7<78>Q9K4K6 Streptomyces coelicolor YJ85_MYCTU<109>YJ86_MYCTU Mycobacterium tuberculosis CDC1551 YJ85_MYCTU<109>YJ86_MYCTU Mycobacterium tuberculosis H37Rv LYSE_COREF<50>LYSG_COREF Corynebacterium efficiens LYSE_CORGL<62>LYSG_CORGL Corynebacterium glutamicum Q8UGV8<321>Q8UGV7 Agrobacterium tumefaciens Wash Q8UGV8<321>Q8UGV7 Agrobacterium tumefaciens Cereon AAN66541<87>AAN66542 Pseudomonas putida Q8P6L3<108>Q8P6L2 Xanthomonas campestris Q9KUN4<165>ICIA_VIBCH Vibrio cholerae AAO09968<128>AAO09969 Vibrio vulnificus AAN55881<113>AAN55882 Shewanella oneidensis Q8PHW5<102>Q8PHW4 Xanthomonas axonopodis COG0675<>COG1943 - 6 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives Q8YWC9<38>Q8YWC8 Nostoc sp PCC 7120 Q8YLC7<54>Q8YLC6 Nostoc sp PCC 7120 Q8YL50<49>Q8YL49 Nostoc sp PCC 7120 Q8YKZ0<51>Q8YKY9 Nostoc sp PCC 7120 Q8YK48<68>Q8YK47 Nostoc sp PCC 7120 Q8PZS1<1>Q8PZS0 Methanosarcina mazei Q8TH26<47>Q8TKN9 Methanosarcina acetivorans BAC07709<52>BAC07710 Synechococcus elongatus BAC07940<52>BAC07941 Synechococcus elongatus BAC08021<52>BAC08022 Synechococcus elongatus Q56125<218>Q93GR2 Salmonella typhimurium LT2 AAN43524<380>AAN43525 Shigella flexneri Q9HSW9<390>Q9HSW8 Halobacterium sp NRC-1 Q9HM87<18>Q9HM86 Halobacterium sp NRC-1 Q8XBN3<68>Q8X2J7 Escherichia coli O157 O25169<38>O34550 Helicobacter pylori 26695 O34491<70>O34754 Helicobacter pylori 26695 O34491<70>O34754 Helicobacter pylori 26695 O34945<70>O34754 Helicobacter pylori 26695 Q9ZKV9<28>Q9ZKV8 Helicobacter pylori J99 Q8YV14<6>Q8YV13 Nostoc sp PCC 7120 Q8YRS2<47>Q8YRS1 Nostoc sp PCC 7120 Q8XCI3<23>Q8XCI2 Escherichia coli EDL933 AAN82248<13>AAN82249 Escherichia coli O6 Q8TU17<47>Q8TH26 Methanosarcina acetivorans BAC07809<52>BAC07810 Synechococcus elongatus BAC07952<52>BAC07953 Synechococcus elongatus BAC08693<52>BAC08694 Synechococcus elongatus BAC08727<52>BAC08728 Synechococcus elongatus BAC08931<52>BAC08932 Synechococcus elongatus BAC09583<52>BAC09584 Synechococcus elongatus BAC09789<52>BAC09790 Synechococcus elongatus BAC09873<52>BAC09874 Synechococcus elongatus BAC09950<52>BAC09951 Synechococcus elongatus Q8Z9J2<20>Q8Z9J1 Salmonella typhi CT18 Q8XCI3<68>Q8XCI2 Escherichia coli O157 O34754<70>O34491 Helicobacter pylori 26695 O34754<70>O34945 Helicobacter pylori 26695 COG1028<>COG2207 - 6 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** AraC-type DNA-binding domain-containing proteins Q97FW9<176>Q97FW8 Clostridium acetobutylicum Q8U780<55>Q8U779 Agrobacterium tumefaciens Wash Q9EWL1<134>Q9EWL0 Streptomyces coelicolor Q99PZ7<87>Q9L8G9 Streptomyces coelicolor Q9I3W5<92>Q9I3W4 Pseudomonas aeruginosa Q9HUD8<112>Q9HUD7 Pseudomonas aeruginosa Q8XW78<173>Q8XW77 Ralstonia solanacearum Q98IY0<136>Q98IX9 Mesorhizobium loti Q98H76<125>Q98H75 Mesorhizobium loti Q92YS1<95>Q92YS0 Sinorhizobium meliloti Q8U779<55>Q8U780 Agrobacterium tumefaciens Cereon Q9L8G9<87>Q99PZ7 Streptomyces coelicolor Q9HZT0<211>Q9HZS9 Pseudomonas aeruginosa Q8PDM4<97>Q8PDM3 Xanthomonas campestris COG0583<>COG0730 - 6 - Transcriptional regulator ** Predicted permeases Q8NNW2<91>Q8NNW1 Corynebacterium glutamicum AAN66653<98>AAN66654 Pseudomonas putida AAN67480<114>AAN67481 Pseudomonas putida Q8XQG0<124>Q8XQF9 Ralstonia solanacearum Q8P593<89>Q8P592 Xanthomonas campestris BAC52998<158>BAC52999 Bradyrhizobium japonicum Q9HZZ6<38>Q9HZZ5 Pseudomonas aeruginosa Q9HXM0<108>Q9HXL9 Pseudomonas aeruginosa AAN69527<63>AAN69528 Pseudomonas putida AAN70236<78>AAN70237 Pseudomonas putida Q8XWP7<157>Q8XWP6 Ralstonia solanacearum BAC45775<94>BAC45776 Bradyrhizobium japonicum AAN55862<167>AAN55863 Shewanella oneidensis Q8PPL6<88>Q8PPL5 Xanthomonas axonopodis COG0583<>COG0604 - 6 - Transcriptional regulator ** NADPH:quinone reductase and related Zn-dependent oxidoreductases YOFA_BACSU<128>O35017 Bacillus subtilis Q9A5U5<90>Q9A5U4 Caulobacter crescentus Q8UKD6<195>Q8UKD5 Agrobacterium tumefaciens Wash Q8U6D5<196>Q8U6D7 Agrobacterium tumefaciens Cereon Q8UKD6<45>Q8UKD5 Agrobacterium tumefaciens Cereon AAN68434<207>AAN68435 Pseudomonas putida AAN68560<106>AAN68561 Pseudomonas putida AAN68569<108>AAN68570 Pseudomonas putida BAC49401<104>BAC49402 Bradyrhizobium japonicum BAC50808<113>BAC50809 Bradyrhizobium japonicum Q931C6<126>Q931C5 Sinorhizobium meliloti Q8U6D7<196>Q8U6D5 Agrobacterium tumefaciens Wash Q8UK00<45>Q8UJZ9 Agrobacterium tumefaciens Wash Q8UK00<45>Q8UJZ9 Agrobacterium tumefaciens Cereon Q9I4J8<146>Q9I4J7 Pseudomonas aeruginosa Q9I0Z1<100>Q9I0Z0 Pseudomonas aeruginosa Q8P362<96>Q8P361 Xanthomonas campestris Q98JI4<133>Q98JI3 Mesorhizobium loti Q98I43<125>Q98I42 Mesorhizobium loti Q98F62<107>Q98F61 Mesorhizobium loti Q986Y2<103>Q986Y1 Mesorhizobium loti Q92MZ8<105>Q92MZ7 Sinorhizobium meliloti AAN53484<120>AAN53485 Shewanella oneidensis Q8PEK0<97>Q8PEJ9 Xanthomonas axonopodis COG0312<>COG3028 - 6 - Predicted Zn-dependent proteases and their inactivated homologs ** Uncharacterized protein conserved in bacteria Q8ZAU4<175>AAM83766 Yersinia pestis KIM Q9HVU9<21>Q9HVU8 Pseudomonas aeruginosa Q8P7K7<199>Q8P7K6 Xanthomonas campestris Q9JZZ3<123>Q9JZZ2 Neisseria meningitidis B AAN45673<94>AAN45674 Shigella flexneri Q9JV12<91>Q9JV11 Neisseria meningitidis A Q9KP44<99>Q9KP43 Vibrio cholerae AAO09210<118>AAO09211 Vibrio vulnificus AAN57052<162>AAN57053 Shewanella oneidensis Q8PIY0<79>Q8PIX9 Xanthomonas axonopodis YJGA_ECOLI<94>PMBA_ECOLI Escherichia coli EDL933 AAN83753<94>AAN83754 Escherichia coli O6 Q9PE98<141>Q9PE97 Xylella fastidiosa AAN66566<98>AAN66567 Pseudomonas putida Q8Y0U9<86>Q8Y0U8 Ralstonia solanacearum Q8XEZ5<96>Q8XGJ7 Salmonella typhi CT18 Q8XEZ5<96>Q8XGJ7 Salmonella typhimurium LT2 Q8ZAU5<181>Q8ZAU4 Yersinia pestis CO92 YJGA_HAEIN<89>PMBA_HAEIN Haemophilus influenzae Q9CPC8<95>Q9CPC7 Pasteurella multocida YJGA_ECOLI<94>PMBA_ECOLI Escherichia coli K12 YJGA_ECOLI<94>PMBA_ECOLI Escherichia coli O157 COG0574<>COG1806 - 6 - Phosphoenolpyruvate synthase/pyruvate phosphate dikinase ** Uncharacterized protein conserved in bacteria PPSA_DEIRA<124>Q9RTN2 Deinococcus radiodurans Q8XEC4<333>YDIA_ECOLI Escherichia coli EDL933 AAN80558<333>YDIA_ECOLI Escherichia coli O6 Q9PDX0<92>Q9PDW9 Xylella fastidiosa Q9K0I2<412>Q9K0I1 Neisseria meningitidis B Q8Z6J0<337>Q8XG91 Salmonella typhi CT18 Q8ZDY5<337>Q8ZDY4 Yersinia pestis CO92 Q9JVI5<412>Q9JVI4 Neisseria meningitidis A AAO06985<156>AAO06986 Vibrio vulnificus AAN55672<126>AAN55673 Shewanella oneidensis PPSA_ECOLI<333>YDIA_ECOLI Escherichia coli K12 Q8XEC4<333>YDIA_ECOLI Escherichia coli O157 Q8PKW6<143>Q8PKW5 Xanthomonas axonopodis Q8ZDY4<337>Q8ZDY5 Yersinia pestis KIM Q9I2X0<166>Q9I2W9 Pseudomonas aeruginosa AAN67695<192>AAN67696 Pseudomonas putida Q8XZH5<204>Q8XZH4 Ralstonia solanacearum Q8P8S4<143>Q8P8S3 Xanthomonas campestris Q8XG91<337>Q8ZPS3 Salmonella typhimurium LT2 YDIA_ECOLI<332>AAN43118 Shigella flexneri Q9KKW4<135>Q9KKW3 Vibrio cholerae COG0293<>COG1534 - 6 - 23S rRNA methylase ** Predicted RNA-binding protein containing KH domain, possibly ribosomal protein RRMJ_ECOLI<126>YHBY_ECOLI Escherichia coli EDL933 RRMJ_ECOLI<126>YHBY_ECOLI Escherichia coli O6 Q9PH52<70>Q9PH51 Xylella fastidiosa RRMJ_PSEAE<95>YBF3_PSEAE Pseudomonas aeruginosa AAN70291<28>AAN70292 Pseudomonas putida Q9JQX5<110>Q9K026 Neisseria meningitidis B Q8Z3H3<88>Q8XG58 Salmonella typhi CT18 Q8ZLS7<88>Q8XG58 Salmonella typhimurium LT2 RRMJ_ECOLI<126>AAN44686 Shigella flexneri Q8ZBB5<147>Q8ZBB4 Yersinia pestis CO92 Q9JQX5<110>Q9JV39 Neisseria meningitidis A RRMJ_ECOLI<126>YHBY_ECOLI Escherichia coli K12 RRMJ_ECOLI<126>YHBY_ECOLI Escherichia coli O157 Q8ZBB4<135>AAM84269 Yersinia pestis KIM Q8XZ80<95>Q8XZ79 Ralstonia solanacearum Q8P9Y2<60>Q8P9Y1 Xanthomonas campestris Q9KU88<120>Q9KU87 Vibrio cholerae AAO10104<139>AAO10105 Vibrio vulnificus AAN54265<91>AAN54266 Shewanella oneidensis YHBY_HAEIN<127>RRMJ_HAEIN Haemophilus influenzae Q8PLQ9<66>Q8PLQ8 Xanthomonas axonopodis COG0541<>COG4137 - 6 - Signal recognition particle GTPase ** ABC-type uncharacterized transport system, permease component SR54_ECOLI<92>YPJD_ECOLI Escherichia coli EDL933 SR54_ECOLI<92>YPJD_ECOLI Escherichia coli O6 Q9HXP8<301>Q9HXP7 Pseudomonas aeruginosa Q9K177<220>Q9K176 Neisseria meningitidis B Q8XF48<166>Q8XFG6 Salmonella typhi CT18 Q8XF48<166>Q8XFG6 Salmonella typhimurium LT2 AAN44165<92>AAN44166 Shigella flexneri Q8ZBU6<64>Q8ZBU5 Yersinia pestis CO92 Q9CLN6<140>Q9CLN5 Pasteurella multocida SR54_ECOLI<92>YPJD_ECOLI Escherichia coli K12 SR54_ECOLI<92>YPJD_ECOLI Escherichia coli O157 Q8ZBU5<64>Q8ZBU6 Yersinia pestis KIM Q9P9P5<152>Q9PH73 Xylella fastidiosa AAN67082<31>AAN67083 Pseudomonas putida Q8XVM0<198>Q8XVL9 Ralstonia solanacearum Q8PBC9<291>Q8PBC8 Xanthomonas campestris Q9JSQ1<221>Q9JSQ0 Neisseria meningitidis A Q9KUG2<204>Q9KUG1 Vibrio cholerae Q93MK4<214>AAO10032 Vibrio vulnificus AAN54420<334>AAN54421 Shewanella oneidensis Q8PMY7<242>Q8PMY6 Xanthomonas axonopodis COG0483<>COG0565 - 6 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family ** rRNA methylase Q8ZCR8<119>Q8ZCR9 Yersinia pestis KIM AAN66463<152>AAN66464 Pseudomonas putida Q8Y084<114>Q8Y083 Ralstonia solanacearum SUHB_NEIMB<244>Q9JZ06 Neisseria meningitidis B SUHB_NEIMA<181>Q9JU02 Neisseria meningitidis A SUHB_VIBCH<116>Q9KTY4 Vibrio cholerae AAN55300<155>AAN55301 Shewanella oneidensis SUHB_PASMU<214>Q9CNV7 Pasteurella multocida YFHQ_ECOLI<119>SUHB_ECOLI Escherichia coli O6 Q9PAM1<37>SUHB_XYLFA Xylella fastidiosa Q9HXI5<152>SUHB_PSEAE Pseudomonas aeruginosa Q8P8G5<117>Q8P8G4 Xanthomonas campestris YFHQ_SALTY<119>Q8Z4M9 Salmonella typhi CT18 YFHQ_SALTY<119>SUHB_SALTY Salmonella typhimurium LT2 YFHQ_ECOLI<119>AAN44079 Shigella flexneri Q8ZCR9<119>Q8ZCR8 Yersinia pestis CO92 AAO08963<245>AAO08964 Vibrio vulnificus YFHQ_ECOLI<119>SUHB_ECOLI Escherichia coli K12 YFHQ_ECO57<119>SUHB_ECOLI Escherichia coli O157 Q8PJZ3<118>Q8PJZ2 Xanthomonas axonopodis COG0564<>COG4105 - 6 - Pseudouridylate synthases, 23S RNA-specific ** DNA uptake lipoprotein RLUD_BUCAI<165>Y402_BUCAI Buchnera aphidicola APS Q8X9F0<135>YFIO_ECOLI Escherichia coli EDL933 AAN81565<135>YFIO_ECOLI Escherichia coli O6 RLUD_PSEAE<146>Y9F5_PSEAE Pseudomonas aeruginosa Q8P682<123>Q8P681 Xanthomonas campestris Q8XGG2<132>Q8Z4J0 Salmonella typhi CT18 Q8XGG2<132>Q8ZMW8 Salmonella typhimurium LT2 Q8ZBV7<136>Q8ZBV6 Yersinia pestis CO92 AAO09003<138>AAO09004 Vibrio vulnificus RLUD_HAEIN<108>YFIO_HAEIN Haemophilus influenzae RLUD_PASMU<106>YH20_PASMU Pasteurella multocida RLUD_ECOLI<135>YFIO_ECOLI Escherichia coli K12 Q8X9F0<135>YFIO_ECOLI Escherichia coli O157 Q8PHN2<121>Q8PHN1 Xanthomonas axonopodis RLUD_BUCAP<166>Y389_BUCAP Buchnera aphidicola Schiz BAC24680<78>BAC24681 Wigglesworthia brevipalpis Q8ZBV6<136>Q8ZBV7 Yersinia pestis KIM Y938_XYLFA<88>Q9PET9 Xylella fastidiosa Q8XYX9<16>Q8XYX8 Ralstonia solanacearum AAN44148<135>AAN44149 Shigella flexneri Y708_VIBCH<119>Q9KU20 Vibrio cholerae COG0142<>COG0261 - 6 - Geranylgeranyl pyrophosphate synthase ** Ribosomal protein L21 Q8ZBA5<212>AAM84260 Yersinia pestis KIM AAN66312<47>AAN66313 Pseudomonas putida Q9JQV2<224>Q9JRF6 Neisseria meningitidis A Q9KUT1<196>Q9KUT0 Vibrio cholerae Q9CNS9<219>Q9CNS8 Pasteurella multocida RL21_ECOLI<259>Q8X9K0 Escherichia coli EDL933 BAC24623<118>BAC24624 Wigglesworthia brevipalpis Q9HVL6<241>Q9HVL5 Pseudomonas aeruginosa Q8XVK8<279>Q8XVK7 Ralstonia solanacearum Q9JRF6<224>Q9JQV2 Neisseria meningitidis B Q8XGA0<259>Q8XFR7 Salmonella typhi CT18 Q8XGA0<258>Q8XFR7 Salmonella typhimurium LT2 AAN44692<258>ISPB_ECOLI Shigella flexneri Q8ZBA6<260>Q8ZBA5 Yersinia pestis CO92 AAO09183<396>AAO09184 Vibrio vulnificus AAN56638<273>AAN56639 Shewanella oneidensis RL21_HAEIN<213>ISPB_HAEIN Haemophilus influenzae RL21_ECOLI<259>ISPB_ECOLI Escherichia coli K12 RL21_ECOLI<259>Q8X9K0 Escherichia coli O157 COG0596<>COG1309 - 6 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Transcriptional regulator AAN58960<139>AAN58961 Streptococcus mutans Q97DP0<218>Q97DN9 Clostridium acetobutylicum Q9L120<87>Q9L119 Streptomyces coelicolor Q8PC91<141>Q8PC90 Xanthomonas campestris O53622<38>O53623 Mycobacterium tuberculosis CDC1551 O53622<62>O53623 Mycobacterium tuberculosis H37Rv Q8PNX3<126>Q8PNX2 Xanthomonas axonopodis Q97MJ5<288>Q97MJ4 Clostridium acetobutylicum Q97G98<151>Q97G97 Clostridium acetobutylicum Q8UDR2<917>Q8UDR0 Agrobacterium tumefaciens Cereon Q8U5U6<50>Q8UK28 Agrobacterium tumefaciens Cereon Q8P6U7<208>Q8P6U6 Xanthomonas campestris Q98IT4<130>Q98IT3 Mesorhizobium loti Q92YD5<56>Q92YD4 Sinorhizobium meliloti Q8PI46<218>Q8PI45 Xanthomonas axonopodis COG0491<>COG0500 - 6 - Zn-dependent hydrolases, including glyoxylases ** SAM-dependent methyltransferases GLO2_ECOLI<16>Q8X7Z0 Escherichia coli EDL933 Q9AAS7<18>Q9AAS6 Caulobacter crescentus AAN78739<16>AAN78740 Escherichia coli O6 Q9I2T1<102>Q9I2T0 Pseudomonas aeruginosa Q8Z983<35>Q8Z982 Salmonella typhi CT18 Q8ZRM2<35>Q8ZRM1 Salmonella typhimurium LT2 AAN41860<31>AAN41861 Shigella flexneri Q8ZH32<45>Q8ZH31 Yersinia pestis CO92 AAO10285<39>AAO10286 Vibrio vulnificus Q9CMW8<23>Q9CMW7 Pasteurella multocida GLO2_ECOLI<16>YAFS_ECOLI Escherichia coli K12 GLO2_ECOLI<16>Q8X7Z0 Escherichia coli O157 Q8U9W2<120>Q8U9W1 Agrobacterium tumefaciens Wash AAN69725<59>AAN69726 Pseudomonas putida Q8XZ90<89>Q8XZ89 Ralstonia solanacearum BAC45486<109>BAC45487 Bradyrhizobium japonicum Q98G03<164>Q98G02 Mesorhizobium loti Q92MF9<102>Q92MF8 Sinorhizobium meliloti Q9KPX7<38>Q9KPX6 Vibrio cholerae AAN55592<161>AAN55593 Shewanella oneidensis COG0477<>COG2207 - 6 - Permeases of the major facilitator superfamily ** AraC-type DNA-binding domain-containing proteins Q926Q9<123>Q926Q8 Listeria innocua Q9Z479<1451>Q8U894 Agrobacterium tumefaciens Cereon Q8UB63<117>Q8UB64 Agrobacterium tumefaciens Cereon Q9KYN5<55>Q9KYN4 Streptomyces coelicolor Q9I4M7<90>Q9I4M6 Pseudomonas aeruginosa Q9HX88<102>Q9HX87 Pseudomonas aeruginosa AAN29585<252>AAN29586 Brucella suis AAN67331<296>AAN67332 Pseudomonas putida BAC51992<51>BAC51993 Bradyrhizobium japonicum Q92RK8<146>Q92RK7 Sinorhizobium meliloti Q97J35<142>Q97J34 Clostridium acetobutylicum Q8UB64<126>Q8UB63 Agrobacterium tumefaciens Wash Q8YG70<189>Q8YG69 Brucella melitensis BAC51517<1053>BAC51518 Bradyrhizobium japonicum Q98HW2<122>Q98HW1 Mesorhizobium loti Q92SY5<118>Q92SY4 Sinorhizobium meliloti Q9KSJ6<251>Q9KSJ5 Vibrio cholerae Q9KMQ4<102>Q9KMQ3 Vibrio cholerae AAO07868<96>AAO07869 Vibrio vulnificus AAO08323<144>AAO08324 Vibrio vulnificus COG2755<>COG4181 - 6 - Lysophospholipase L1 and related esterases ** Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Q8UC19<91>Q8UC18 Agrobacterium tumefaciens Wash Q8UC19<67>Q8UC18 Agrobacterium tumefaciens Cereon Q9HZY8<11>Q9HZY7 Pseudomonas aeruginosa AAN29041<147>AAN29042 Brucella suis Q8XYP1<44>Q8XYP0 Ralstonia solanacearum Q92L64<113>Q92L63 Sinorhizobium meliloti AAO07232<26>AAO07233 Vibrio vulnificus Q9A7G4<58>Q9A7G3 Caulobacter crescentus AAN67930<11>AAN67931 Pseudomonas putida Q8PCF7<155>Q8PCF6 Xanthomonas campestris Q98E96<17>Q98E95 Mesorhizobium loti Q8PP56<146>Q8PP55 Xanthomonas axonopodis COG1309<>COG1538 - 6 - Transcriptional regulator ** Outer membrane protein Q8XUI1<87>Q8XUI0 Ralstonia solanacearum Q9KS52<107>Q9KS51 Vibrio cholerae Q9A7D8<96>Q9A7D7 Caulobacter crescentus AAN68906<72>AAN68907 Pseudomonas putida Q8XSM5<211>Q8XSM4 Ralstonia solanacearum Q8PDC1<85>Q8PDC0 Xanthomonas campestris BAC49586<168>BAC49587 Bradyrhizobium japonicum Q8PQ92<87>Q8PQ91 Xanthomonas axonopodis COG0609<>COG0614 - 6 - ABC-type Fe3+-siderophore transport system, permease component ** ABC-type Fe3+-hydroxamate transport system, periplasmic component FHUB_BACSU<98>FHUD_BACSU Bacillus subtilis Y876_METJA<1232>Y878_METJA Methanococcus jannaschii Q97C19<98>Q97C18 Thermoplasma volcanium Q973Q7<68>Q973Q6 Sulfolobus tokodaii O31567<131>O31568 Bacillus subtilis Q8XM98<130>Q8XM97 Clostridium perfringens BAC12407<203>BAC12408 Oceanobacillus iheyhensis Q9HLQ6<97>Q9HLQ5 Thermoplasma acidophilum Q9HQ20<60>Q9HQ19 Halobacterium sp NRC-1 COG1764<>COG1846 - 6 - Predicted redox protein, regulator of disulfide bond formation ** Transcriptional regulators BAC19718<3>BAC19719 Corynebacterium efficiens Q9L049<139>Q9L048 Streptomyces coelicolor AAN34057<206>AAN34058 Brucella suis BAC46000<21>BAC46001 Bradyrhizobium japonicum BAC49277<125>BAC49278 Bradyrhizobium japonicum AAN54050<129>AAN54051 Shewanella oneidensis Q9CHX7<101>Q9CHX6 Lactococcus lactis OHRR_BACSU<143>OHRB_BACSU Bacillus subtilis Q8UH39<193>Q8UH38 Agrobacterium tumefaciens Wash Q8UH39<193>Q8UH38 Agrobacterium tumefaciens Cereon BAC15414<123>BAC15415 Oceanobacillus iheyhensis Q8YCX0<161>Q8YCW9 Brucella melitensis Q92RD0<109>Q92RC9 Sinorhizobium meliloti Q9KKU5<97>Q9KKU4 Vibrio cholerae AAO07522<115>AAO07523 Vibrio vulnificus COG0583<>COG2814 - 6 - Transcriptional regulator ** Arabinose efflux permease Q8U808<157>Q8U807 Agrobacterium tumefaciens Wash AAN68143<95>AAN68144 Pseudomonas putida Q8Y092<113>Q8Y091 Ralstonia solanacearum Q98EU3<126>Q98EU2 Mesorhizobium loti Q8Z987<105>Q8Z986 Salmonella typhi CT18 Q8ZRM6<105>Q8ZRM5 Salmonella typhimurium LT2 Q8U807<121>Q8U808 Agrobacterium tumefaciens Cereon OPDE_PSEAE<216>OPRR_PSEAE Pseudomonas aeruginosa Q8P7D9<99>Q8P7D8 Xanthomonas campestris BAC45516<42>BAC45517 Bradyrhizobium japonicum Q9KB19<101>Q9KB18 Bacillus halodurans Q8PIQ8<100>Q8PIQ7 Xanthomonas axonopodis COG0477<>COG0789 - 6 - Permeases of the major facilitator superfamily ** Predicted transcriptional regulators AAN58963<151>AAN58964 Streptococcus mutans Q9CIW8<190>Q9CIW7 Lactococcus lactis Q97DH1<140>Q97DH0 Clostridium acetobutylicum BLTR_BACSU<117>BMR2_BACSU Bacillus subtilis Q8P6Y4<708>Q8P6Y3 Xanthomonas campestris Q9KN81<179>Q9KN80 Vibrio cholerae AAO07851<129>AAO07852 Vibrio vulnificus Q8PI98<100>Q8PI97 Xanthomonas axonopodis COG1609<>COG1653 - 5 - Transcriptional regulators ** ABC-type sugar transport system, periplasmic component Q8Y8N8<245>Q8Y8N7 Listeria monocytogenes Q92DG2<245>Q92DG1 Listeria innocua Q8UAN6<164>Q8UAN5 Agrobacterium tumefaciens Wash Q8UHT9<278>Q8UHT8 Agrobacterium tumefaciens Wash Q8UBA9<17>Q8UBB0 Agrobacterium tumefaciens Cereon Q8UHT9<230>Q8UHT8 Agrobacterium tumefaciens Cereon Q8ZDS8<122>AAM85280 Yersinia pestis KIM Q9S2C4<334>Q9S2C3 Streptomyces coelicolor Q9F3I7<366>Q9F3I6 Streptomyces coelicolor Q9L028<169>Q9L027 Streptomyces coelicolor Q93J95<191>Q93J94 Streptomyces coelicolor Q9F3C1<337>Q9F3C0 Streptomyces coelicolor Q9R9Q8<479>Q9R9Q7 Sinorhizobium meliloti Q92W29<148>Q92W28 Sinorhizobium meliloti AGLR_RHIME<318>AGLE_RHIME Sinorhizobium meliloti AAN24262<486>AAN24263 Bifidobacterium longum Q8UBB0<119>Q8UBA9 Agrobacterium tumefaciens Wash Q8UAN5<176>Q8UAN6 Agrobacterium tumefaciens Cereon Q9RIV4<234>Q9RIV3 Streptomyces coelicolor Q9K434<279>Q9K433 Streptomyces coelicolor Q9X861<161>Q9X862 Streptomyces coelicolor Q8YBF5<351>Q8YBF4 Brucella melitensis BAC51621<55>BAC51622 Bradyrhizobium japonicum Q98GH9<407>Q98GH8 Mesorhizobium loti Q98CK3<359>Q98CK2 Mesorhizobium loti Q92P64<476>Q92P63 Sinorhizobium meliloti Q8ZDS9<272>Q8ZDS8 Yersinia pestis CO92 COG0583<>COG0667 - 5 - Transcriptional regulator ** Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Q8U9C0<104>Q8U9B9 Agrobacterium tumefaciens Wash Q8U763<19>Q8U764 Agrobacterium tumefaciens Cereon Q9RL19<94>Q9RL18 Streptomyces coelicolor Q9X7T0<162>Q9X7S9 Streptomyces coelicolor Q9I2Z9<152>Q9I2Z8 Pseudomonas aeruginosa Q9I0V0<119>Q9I0U9 Pseudomonas aeruginosa Q98J00<94>Q98IZ9 Mesorhizobium loti Q98CQ4<94>Q98CQ3 Mesorhizobium loti Q92M19<106>Q92M18 Sinorhizobium meliloti Q8PGY6<316>Q8PGY5 Xanthomonas axonopodis Q8U764<160>Q8U763 Agrobacterium tumefaciens Wash Q8UIN3<117>Q8UIN2 Agrobacterium tumefaciens Wash Q8U5N2<9>Q8UIN2 Agrobacterium tumefaciens Cereon Q9I4K8<135>Q9I4K7 Pseudomonas aeruginosa Q8P4I3<424>Q8P4I2 Xanthomonas campestris BAC50812<102>BAC50813 Bradyrhizobium japonicum Q92SS6<181>Q92SS5 Sinorhizobium meliloti Q8Z9G1<86>Q8Z9G0 Salmonella typhi CT18 COG0477<>COG1396 - 5 - Permeases of the major facilitator superfamily ** Predicted transcriptional regulators Q8NQS0<79>Q8NQR9 Corynebacterium glutamicum CAD55439<109>Q9RJL2 Streptomyces coelicolor Q9RDF5<107>Q9RDF4 Streptomyces coelicolor Q9I482<39>Q9I481 Pseudomonas aeruginosa BAC50794<356>BAC50795 Bradyrhizobium japonicum Q92SU2<176>Q92SU1 Sinorhizobium meliloti Q97DK3<996>Q97DK2 Clostridium acetobutylicum Q8NM08<155>Q46055 Corynebacterium glutamicum Q9L2I2<111>Q9L2I1 Streptomyces coelicolor COG1222<>COG1813 - 5 - ATP-dependent 26S proteasome regulatory subunit ** Predicted transcription factor, homolog of eukaryotic MBF1 PSMR_SULTO<632>Q975U1 Sulfolobus tokodaii PSMR_METTH<107>O26825 Methanothermobacter thermautotr PSMR_ARCFU<94>O28302 Archaeoglobus fulgidus Q8PY59<31>PSMR_METMA Methanosarcina mazei Q8TI89<22>PSMR_METAC Methanosarcina acetivorans Q980M2<73>PSMR_SULSO Sulfolobus solfataricus Q9YAC8<222>PSMR_AERPE Aeropyrum pernix COG0745<>COG0845 - 5 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** Membrane-fusion protein Q55933<119>Q55934 Synechocystis sp PCC 6803 Q8U718<93>Q8U719 Agrobacterium tumefaciens Cereon AAN69056<108>AAN69057 Pseudomonas putida Q8XQM6<263>Q8XQM5 Ralstonia solanacearum Q8ZCI9<188>Q8ZCI8 Yersinia pestis CO92 Q8U719<180>Q8U718 Agrobacterium tumefaciens Wash Q8ZCI8<188>Q8ZCI9 Yersinia pestis KIM Q8XT04<99>Q8XT03 Ralstonia solanacearum Q8XR27<159>Q8XR26 Ralstonia solanacearum COG0533<>COG0828 - 5 - Metal-dependent proteases with possible chaperone activity ** Ribosomal protein S21 Q8XBK3<238>RS21_ECOLI Escherichia coli EDL933 AAM87082<391>RS21_ECOLI Yersinia pestis KIM AAN82260<238>RS21_ECOLI Escherichia coli O6 Q8P494<281>RS21_XANAC Xanthomonas campestris Q8Z3M6<228>RS21_ECOLI Salmonella typhi CT18 GCP_SALTY<228>RS21_ECOLI Salmonella typhimurium LT2 AAN44581<238>AAN44582 Shigella flexneri AAO09142<229>RS21_VIBCH Vibrio vulnificus GCP_HAEIN<232>RS21_HAEIN Haemophilus influenzae Q9CLJ1<219>RS21_PASMU Pasteurella multocida GCP_ECOLI<238>RS21_ECOLI Escherichia coli K12 Q8XBK3<238>RS21_ECOLI Escherichia coli O157 Q8PFV1<277>RS21_XANAC Xanthomonas axonopodis RS21_BUCAI<234>GCP_BUCAI Buchnera aphidicola APS BAC24616<179>BAC24617 Wigglesworthia brevipalpis RS21_XYLFA<173>Q9PG67 Xylella fastidiosa RS21_PSEAE<201>Q9I5V7 Pseudomonas aeruginosa AAN66020<205>AAN66021 Pseudomonas putida RS21_ECOLI<406>Q8ZI68 Yersinia pestis CO92 AAN54355<215>AAN54356 Shewanella oneidensis RS21_BUCAP<233>GCP_BUCAP Buchnera aphidicola Schiz COG0697<>COG2207 - 5 - Permeases of the drug/metabolite transporter (DMT) superfamily ** AraC-type DNA-binding domain-containing proteins Q8ZD31<226>Q8ZD30 Yersinia pestis KIM Q9HXB6<126>Q9HXB5 Pseudomonas aeruginosa Q9HWB3<101>Q9HWB2 Pseudomonas aeruginosa AAN70177<186>AAN70178 Pseudomonas putida Q8XRZ6<242>Q8XRZ5 Ralstonia solanacearum Q8XPK2<98>Q8XPK1 Ralstonia solanacearum Q8ZD31<226>Q8ZD30 Yersinia pestis CO92 AAO08452<166>AAO08453 Vibrio vulnificus AAN54162<191>AAN54163 Shewanella oneidensis P96660<113>YDED_BACSU Bacillus subtilis Q8UJY6<98>Q8UJY5 Agrobacterium tumefaciens Wash Q8UJY6<20>Q8UJY5 Agrobacterium tumefaciens Cereon AAN70421<226>AAN70422 Pseudomonas putida Q9KEX5<107>Q9KEX4 Bacillus halodurans COG0162<>COG0744 - 5 - Tyrosyl-tRNA synthetase ** Membrane carboxypeptidase (penicillin-binding protein) AAO05005<404>AAO05006 Staphylococcus epidermidis Q9A1U3<92>Q9A1U2 Streptococcus pyogenes M1 Q9CIH5<145>Q9CIH4 Lactococcus lactis Q99TD5<382>Q99TD4 Staphylococcus aureus Mu50 Q99TD5<382>Q99TD4 Staphylococcus aureus N315 BAC14174<390>BAC14175 Oceanobacillus iheyhensis Q8P2Y5<104>Q8P2Y4 Streptococcus pyogenes M18 Q99TD5<382>Q99TD4 Staphylococcus aureus MW2 Q8K8W5<104>Q8K8W4 Streptococcus pyogenes M3 AAM99065<111>AAM99066 Streptococcus agalactiae Q9K7X9<429>Q9K7X8 Bacillus halodurans Q8YSV0<177>Q8YSU9 Nostoc sp PCC 7120 AAN59595<156>AAN59596 Streptococcus mutans Q97NE4<142>Q97NE3 Streptococcus pneumoniae TIGR4 O70038<142>AAL00712 Streptococcus pneumoniae R6 BAC07602<162>BAC07603 Synechococcus elongatus COG0424<>COG1399 - 5 - Nucleotide-binding protein implicated in inhibition of septum formation ** Predicted metal-binding, possibly nucleic acid-binding protein YCEF_ECO57<160>YCED_ECOLI Escherichia coli EDL933 YF93_YERPE<130>Q8ZFU0 Yersinia pestis KIM AAN67527<61>AAN67528 Pseudomonas putida YA46_RALSO<212>Q8Y0J7 Ralstonia solanacearum Q8PBV4<112>Q8PBV3 Xanthomonas campestris YJ09_NEIMB<148>Q9JXS1 Neisseria meningitidis B YCEF_SALTI<198>YCED_SALTY Salmonella typhi CT18 YCEF_SALTY<198>YCED_SALTY Salmonella typhimurium LT2 AAN42710<160>AAN42711 Shigella flexneri YF93_YERPE<142>Q8ZFU0 Yersinia pestis CO92 YCEF_ECOLI<160>YCED_ECOLI Escherichia coli K12 YCEF_ECO57<160>YCED_ECOLI Escherichia coli O157 Q8PNF1<115>Q8PNF0 Xanthomonas axonopodis Q9HZN3<110>YT72_PSEAE Pseudomonas aeruginosa Q9JW51<148>Y546_NEIMA Neisseria meningitidis A Q9KQH2<148>YK27_VIBCH Vibrio cholerae AAO11341<177>AAO11342 Vibrio vulnificus AAN55806<258>AAN55807 Shewanella oneidensis COG0691<>COG2867 - 5 - tmRNA-binding protein ** Oligoketide cyclase/lipid transport protein SSRP_RALSO<122>Q8XZH0 Ralstonia solanacearum SSRP_XANCP<61>Q8PAL6 Xanthomonas campestris SSRP_YERPE<161>Q8ZH13 Yersinia pestis CO92 SSRP_VIBCH<178>Y849_VIBCH Vibrio cholerae AAN54534<265>AAN54535 Shewanella oneidensis SSRP_XANAC<61>Q8PMB8 Xanthomonas axonopodis Q8X9B4<132>SSRP_ECOLI Escherichia coli EDL933 BAC24257<66>BAC24258 Wigglesworthia brevipalpis AAM86628<47>SSRP_YERPE Yersinia pestis KIM AAN81591<132>SSRP_ECOLI Escherichia coli O6 Q9PAZ8<64>SSRP_XYLFA Xylella fastidiosa YBG7_PSEAE<276>SSRP_PSEAE Pseudomonas aeruginosa AAN70304<50>AAN70305 Pseudomonas putida Q8XFB4<150>SSRP_SALTY Salmonella typhi CT18 Q8XFB4<150>SSRP_SALTY Salmonella typhimurium LT2 YFJG_ECOLI<132>SSRP_ECOLI Shigella flexneri AAO08894<38>AAO08895 Vibrio vulnificus YFJG_ECOLI<132>SSRP_ECOLI Escherichia coli K12 Q8X9B4<132>SSRP_ECOLI Escherichia coli O157 COG4972<>COG5009 - 5 - Tfp pilus assembly protein, ATPase PilM ** Membrane carboxypeptidase/penicillin-binding protein Q51351<185>PBPA_PSEAE Pseudomonas aeruginosa AAN70648<204>AAN70649 Pseudomonas putida Q8XV56<453>Q8XV55 Ralstonia solanacearum Q8P5V3<96>Q8P5V2 Xanthomonas campestris Q9JVW2<152>PBPA_NEIMA Neisseria meningitidis A Q9KNU6<113>PBPA_VIBCH Vibrio cholerae Q8PH74<93>Q8PH73 Xanthomonas axonopodis PBPA_XYLFA<55>Q9PGD3 Xylella fastidiosa PBPA_NEIMA<152>Q9JY02 Neisseria meningitidis B AAO09825<245>AAO09826 Vibrio vulnificus AAN53365<190>AAN53366 Shewanella oneidensis COG0268<>COG0728 - 5 - Ribosomal protein S20 ** Uncharacterized membrane protein, putative virulence factor AAN66226<251>AAN66227 Pseudomonas putida RS20_RALSO<299>Q8XWB7 Ralstonia solanacearum RS20_XANCP<117>Q8PBG8 Xanthomonas campestris RS20_VIBCH<243>MVIN_VIBCH Vibrio cholerae RS20_PASMU<348>Q9CKF9 Pasteurella multocida RS20_XANAC<117>Q8PN21 Xanthomonas axonopodis Q9PAS5<40>RS20_XYLFA Xylella fastidiosa Q9HVM2<284>RS20_PSEAE Pseudomonas aeruginosa AAO09028<278>AAO09029 Vibrio vulnificus MVIN_HAEIN<303>RS20_HAEIN Haemophilus influenzae COG0325<>COG2805 - 5 - Predicted enzyme with a TIM-barrel fold ** Tfp pilus assembly protein, pilus retraction ATPase PilT Y394_PSEAE<215>PILT_PSEAE Pseudomonas aeruginosa Q9JWW0<120>Q9JWV9 Neisseria meningitidis A Y461_VIBCH<26>Q9KUQ3 Vibrio cholerae AAO09951<25>AAO09952 Vibrio vulnificus AAN70658<54>AAN70659 Pseudomonas putida Q8XVZ3<125>Q8XVZ2 Ralstonia solanacearum Q8NL23<288>Q8P758 Xanthomonas campestris O85741<120>Q9K1N3 Neisseria meningitidis B Q8Z3U9<18>Q8Z3U8 Salmonella typhi CT18 Q8ZM48<18>Q8ZM47 Salmonella typhimurium LT2 Q8ZHF9<68>Q8ZHF8 Yersinia pestis CO92 AAN56349<36>AAN56350 Shewanella oneidensis Q8NL23<412>Q8PIH3 Xanthomonas axonopodis COG0477<>COG1028 - 5 - Permeases of the major facilitator superfamily ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Q97WD8<39>Q97WD7 Sulfolobus solfataricus Q96XG0<258>Q96XF9 Sulfolobus tokodaii Q8X7R8<244>Q8X4R6 Escherichia coli EDL933 Q9RKU3<62>Q9RKU2 Streptomyces coelicolor AAN81780<244>AAN81781 Escherichia coli O6 Q9HLH7<273>Q9HLH6 Thermoplasma acidophilum Q8Y2W7<394>Q8Y2W6 Ralstonia solanacearum YGCW_ECOLI<244>YQCE_ECOLI Escherichia coli K12 Q8X7R8<244>Q8X4R6 Escherichia coli O157 COG1309<>COG1511 - 5 - Transcriptional regulator ** Predicted membrane protein Q9RY76<168>Q9RY75 Deinococcus radiodurans Q9CH58<164>Q9CH57 Lactococcus lactis Q97N19<165>Q97N18 Clostridium acetobutylicum AAN59724<132>AAN59725 Streptococcus mutans Q99XJ6<135>Q99XJ5 Streptococcus pyogenes M1 Q99RQ3<161>Q99RQ2 Staphylococcus aureus Mu50 Q99RQ3<161>Q99RQ2 Staphylococcus aureus N315 Q97N39<179>Q97N38 Streptococcus pneumoniae TIGR4 AAL00841<179>AAL00842 Streptococcus pneumoniae R6 Q8NZ07<135>Q8NZ06 Streptococcus pyogenes M18 Q99RQ3<161>Q99RQ2 Staphylococcus aureus MW2 Q8K5H9<135>Q99XJ5 Streptococcus pyogenes M3 AAN00992<139>AAN00993 Streptococcus agalactiae COG0242<>COG1652 - 5 - N-formylmethionyl-tRNA deformylase ** Uncharacterized protein containing LysM domain DEF_PSEAE<139>Q9I7A7 Pseudomonas aeruginosa Q8P4F9<132>Q8P4F8 Xanthomonas campestris DEF_NEIMA<184>Q9JWY8 Neisseria meningitidis A DEF1_VIBCH<92>Q9KVU2 Vibrio cholerae AAO09535<139>AAO09536 Vibrio vulnificus AAN53119<126>AAN53120 Shewanella oneidensis Q8PG20<132>Q8PG19 Xanthomonas axonopodis Q9PEV3<115>DEF_XYLFA Xylella fastidiosa Q8Y3B1<254>DEF1_RALSO Ralstonia solanacearum Q9K1K7<70>DEF_NEIMA Neisseria meningitidis B COG0642<>COG2197 - 5 - Signal transduction histidine kinase ** Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Q8YQQ2<576>O87395 Nostoc sp PCC 7120 Q8YKS3<327>Q8YKS2 Nostoc sp PCC 7120 Q8U6K2<642>Q8U6K4 Agrobacterium tumefaciens Cereon Q9I3U8<146>Q9I3U7 Pseudomonas aeruginosa P73686<171>P73687 Synechocystis sp PCC 6803 AAN57409<97>AAN57410 Shewanella oneidensis COG1335<>COG4977 - 5 - Amidases related to nicotinamidase ** Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain AAN67846<83>AAN67847 Pseudomonas putida Q8P880<209>Q8P879 Xanthomonas campestris Q98HQ3<127>Q98HQ2 Mesorhizobium loti Q92YD7<205>Q92YD6 Sinorhizobium meliloti Q9KXJ1<162>Q9KXJ0 Streptomyces coelicolor Q9X8F9<75>Q9X8G0 Streptomyces coelicolor Q9HXL3<121>Q9HXL2 Pseudomonas aeruginosa AAN57549<101>AAN57550 Shewanella oneidensis COG0697<>COG1167 - 5 - Permeases of the drug/metabolite transporter (DMT) superfamily ** Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs YCXC_BACSU<124>YCXD_BACSU Bacillus subtilis P96668<155>P96669 Bacillus subtilis YDFC_BACSU<133>P96681 Bacillus subtilis Q99XA6<182>Q99XA5 Staphylococcus aureus Mu50 Q99XA6<182>Q99XA5 Staphylococcus aureus N315 Q8UIQ9<117>Q8UIQ8 Agrobacterium tumefaciens Wash Q8UIQ9<156>Q8UIQ8 Agrobacterium tumefaciens Cereon BAC45668<43>BAC45669 Bradyrhizobium japonicum Q98L83<94>Q98L82 Mesorhizobium loti O88047<35>O88048 Streptomyces coelicolor Q9I215<133>Q9I214 Pseudomonas aeruginosa Q8YJB7<107>Q8YJB6 Brucella melitensis AAN68556<122>AAN68557 Pseudomonas putida Q92XC0<82>Q92XB9 Sinorhizobium meliloti AAO08241<94>AAO08242 Vibrio vulnificus AAO08282<88>AAO08283 Vibrio vulnificus COG1012<>COG1309 - 5 - NAD-dependent aldehyde dehydrogenases ** Transcriptional regulator CALB_PSEAE<290>Q9I6C7 Pseudomonas aeruginosa Q8Y320<162>Q8Y319 Ralstonia solanacearum YXBF_BACSU<143>DHA3_BACSU Bacillus subtilis AAN70684<151>AAN70685 Pseudomonas putida Q98CA4<240>Q98CA3 Mesorhizobium loti Y767_MYCTU<202>P71823 Mycobacterium tuberculosis CDC1551 Y767_MYCTU<202>P71823 Mycobacterium tuberculosis H37Rv COG0789<>COG2217 - 5 - Predicted transcriptional regulators ** Cation transport ATPase Q55938<82>Q59997 Synechocystis sp PCC 6803 Q9HXV1<114>Q9HXV0 Pseudomonas aeruginosa AAN30907<89>AAN30908 Brucella suis CUER_YERPE<207>ATCU_YERPE Yersinia pestis CO92 AAN59655<155>AAN59656 Streptococcus mutans ATCU_YERPE<207>CUER_YERPE Yersinia pestis KIM Q8YJM9<77>Q8YJM8 Brucella melitensis AAN70704<84>AAN70705 Pseudomonas putida Q98IB8<113>Q98IB7 Mesorhizobium loti ATCU_SALTI<110>CUER_SALTI Salmonella typhi CT18 ATCU_SALTY<110>CUER_SALTY Salmonella typhimurium LT2 COG0583<>COG0655 - 5 - Transcriptional regulator ** Multimeric flavodoxin WrbA Q9AA18<139>WRBA_CAUCR Caulobacter crescentus Q9PE96<215>Q9PE95 Xylella fastidiosa Q92Y28<182>WRB3_RHIME Sinorhizobium meliloti P96726<123>P96725 Bacillus subtilis Q8NYV0<113>Q8NYU9 Staphylococcus aureus MW2 Q8Y1Q6<409>Q8Y1Q5 Ralstonia solanacearum COG0583<>COG2249 - 5 - Transcriptional regulator ** Putative NADPH-quinone reductase (modulator of drug activity B) BAC15137<119>BAC15138 Oceanobacillus iheyhensis Q9I4B5<85>Q9I4B4 Pseudomonas aeruginosa Q9JXW7<239>Q9JXW6 Neisseria meningitidis B YCAN_ECOLI<100>YCAK_ECOLI Escherichia coli K12 Q984W6<94>Q984W5 Mesorhizobium loti Q92LV5<93>Q92LV4 Sinorhizobium meliloti Q930K9<48>Q930K8 Sinorhizobium meliloti Q9JW04<239>Q9JW03 Neisseria meningitidis A COG0583<>COG1902 - 5 - Transcriptional regulator ** NADH:flavin oxidoreductases, Old Yellow Enzyme family Q8RB37<104>Q8R5T2 Thermoanaerobacter tengcongensis Q8Y9N7<198>Q8Y9N6 Listeria monocytogenes Q92EG9<198>Q92EG8 Listeria innocua Q9PCP8<220>Q9PCP6 Xylella fastidiosa Q92YK3<51>Q92YK2 Sinorhizobium meliloti BAC51445<57>BAC51446 Bradyrhizobium japonicum AAN57126<112>AAN57127 Shewanella oneidensis COG1309<>COG2124 - 4 - Transcriptional regulator ** Cytochrome P450 Q9A5F7<51>Q9A5F6 Caulobacter crescentus Q8UF32<116>Q8UF31 Agrobacterium tumefaciens Wash Q8UF32<116>Q8UF31 Agrobacterium tumefaciens Cereon Q9RD77<115>Q9RD76 Streptomyces coelicolor Q9F2L2<76>Q9F2L1 Streptomyces coelicolor P96812<117>C138_MYCTU Mycobacterium tuberculosis CDC1551 O33179<101>C144_MYCTU Mycobacterium tuberculosis CDC1551 P95100<53>C136_MYCTU Mycobacterium tuberculosis CDC1551 P96812<117>C138_MYCTU Mycobacterium tuberculosis H37Rv O33179<101>C144_MYCTU Mycobacterium tuberculosis H37Rv P95100<116>C136_MYCTU Mycobacterium tuberculosis H37Rv BAC51802<64>BAC51803 Bradyrhizobium japonicum C13A_MYCTU<66>O07252 Mycobacterium tuberculosis CDC1551 C13A_MYCTU<66>O07252 Mycobacterium tuberculosis H37Rv COG0583<>COG0596 - 4 - Transcriptional regulator ** Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) Q9A593<3>Q9A592 Caulobacter crescentus PCAQ_AGRT5<138>Q8U7B1 Agrobacterium tumefaciens Cereon Q9I639<104>Q9I638 Pseudomonas aeruginosa AAN33831<94>AAN33832 Brucella suis AAN66688<55>AAN66689 Pseudomonas putida Q8XWZ1<132>Q8XWZ0 Ralstonia solanacearum BAC45682<283>BAC45683 Bradyrhizobium japonicum BAC52820<486>BAC52821 Bradyrhizobium japonicum Q98JN3<184>Q98JN2 Mesorhizobium loti Q98E29<632>Q98E28 Mesorhizobium loti Q986U5<70>Q986U4 Mesorhizobium loti Q92XF0<95>Q92XE9 Sinorhizobium meliloti Q8U7B1<96>PCAQ_AGRT5 Agrobacterium tumefaciens Wash Q9HY40<299>Q9HY39 Pseudomonas aeruginosa Q9HX27<106>Q9HX26 Pseudomonas aeruginosa Q8YC94<94>Q8YC93 Brucella melitensis BAC51693<127>BAC51694 Bradyrhizobium japonicum Q98IB3<101>Q98IB2 Mesorhizobium loti Q92TM0<95>Q92TL9 Sinorhizobium meliloti COG0583<>COG1012 - 4 - Transcriptional regulator ** NAD-dependent aldehyde dehydrogenases Q8X5A6<77>Q8XAZ8 Escherichia coli EDL933 Q8U8E1<213>Q8U8D9 Agrobacterium tumefaciens Wash Q9I6S0<351>Q9I6R9 Pseudomonas aeruginosa Q8YJ68<107>Q8YJ67 Brucella melitensis Q8XWD9<90>Q8XWD8 Ralstonia solanacearum BAC49218<102>BAC49219 Bradyrhizobium japonicum Q92RW5<116>Q92RW4 Sinorhizobium meliloti Q8ZPI4<103>Q8ZPI3 Salmonella typhimurium LT2 Q8U8D9<363>Q8U8E1 Agrobacterium tumefaciens Cereon Q8UIT7<426>Q8UIT5 Agrobacterium tumefaciens Cereon AAN80405<77>AAN80406 Escherichia coli O6 AAN30727<128>AAN30728 Brucella suis AAN68302<87>AAN68303 Pseudomonas putida AAN68759<108>AAN68760 Pseudomonas putida AAN70240<133>AAN70241 Pseudomonas putida AAN70823<136>AAN70824 Pseudomonas putida Q98F13<161>Q98F12 Mesorhizobium loti Q8Z704<103>Q8Z703 Salmonella typhi CT18 YNEI_ECOLI<77>YNEJ_ECOLI Escherichia coli K12 Q8XAZ8<77>Q8X5A6 Escherichia coli O157 COG1309<>COG1960 - 4 - Transcriptional regulator ** Acyl-CoA dehydrogenases Q9FCA4<171>Q9FCA3 Streptomyces coelicolor Q9S251<90>Q9S250 Streptomyces coelicolor Q9X7Y6<75>Q9L240 Streptomyces coelicolor Q8PDT9<129>Q8PDT8 Xanthomonas campestris BAC50720<326>BAC50721 Bradyrhizobium japonicum P96855<140>P96856 Mycobacterium tuberculosis CDC1551 P96855<272>P96856 Mycobacterium tuberculosis H37Rv Q8PQQ7<129>Q8PQQ6 Xanthomonas axonopodis COG0477<>COG1609 - 4 - Permeases of the major facilitator superfamily ** Transcriptional regulators ARAE_BACSU<138>ARAR_BACSU Bacillus subtilis Q9A612<133>Q9A611 Caulobacter crescentus Q9A5Y2<167>Q9A5Y1 Caulobacter crescentus Q9RJ60<104>O87600 Streptomyces coelicolor Q9A7U3<178>Q9A7U2 Caulobacter crescentus Q8ZHP4<394>Q8ZHP3 Yersinia pestis KIM AAN82930<181>AAN82931 Escherichia coli O6 Q8ZHP4<394>Q8ZHP3 Yersinia pestis CO92 COG1653<>COG1940 - 4 - ABC-type sugar transport system, periplasmic component ** Transcriptional regulator/sugar kinase Q8UAX8<195>Q8UAX7 Agrobacterium tumefaciens Wash Q8U702<238>Q8U701 Agrobacterium tumefaciens Wash BAC15079<153>BAC15080 Oceanobacillus iheyhensis Q926H2<225>Q92VH8 Sinorhizobium meliloti Q92LI8<232>Q92LI7 Sinorhizobium meliloti AAN25313<174>AAN25314 Bifidobacterium longum Q8U701<184>Q8U702 Agrobacterium tumefaciens Cereon Q8UAX7<417>Q8UAX8 Agrobacterium tumefaciens Cereon Q9KXV6<148>Q9KXV5 Streptomyces coelicolor O87855<176>O87856 Streptomyces coelicolor Q98FS5<197>Q98FS4 Mesorhizobium loti Q92XK4<67>Q92XK3 Sinorhizobium meliloti COG0477<>COG0640 - 4 - Permeases of the major facilitator superfamily ** Predicted transcriptional regulators Q9A3Y2<73>Q9A3Y1 Caulobacter crescentus MMR_STRCO<217>Q52517 Streptomyces coelicolor Q978I2<43>Q978I1 Thermoplasma volcanium AAN59702<77>Q93D87 Streptococcus mutans Q93J86<92>Q93J85 Streptomyces coelicolor Q9HLP2<42>Q9HLP1 Thermoplasma acidophilum COG0583<>COG0702 - 4 - Transcriptional regulator ** Predicted nucleoside-diphosphate-sugar epimerases Q9EWJ3<113>Q9EWJ2 Streptomyces coelicolor Q98N95<110>Q98N94 Mesorhizobium loti Q984K1<42>Q984K0 Mesorhizobium loti Q92Y17<61>Q92Y16 Sinorhizobium meliloti Q92XU1<71>Q92XU0 Sinorhizobium meliloti Q9RCY4<178>Q9RCY3 Streptomyces coelicolor Q9RDJ2<136>Q9RDJ1 Streptomyces coelicolor AAN80395<110>AAN80396 Escherichia coli O6 Q985M9<102>Q985M8 Mesorhizobium loti Q8PRC5<172>Q8PRC4 Xanthomonas axonopodis COG0583<>COG1182 - 4 - Transcriptional regulator ** Acyl carrier protein phosphodiesterase Q9I5F4<127>ACD1_PSEAE Pseudomonas aeruginosa Q9I2E3<149>ACD2_PSEAE Pseudomonas aeruginosa AAN68473<134>AAN68474 Pseudomonas putida Q8XQH0<101>ACPD_RALSO Ralstonia solanacearum Q98IF9<108>ACPD_RHILO Mesorhizobium loti Q92QI8<208>ACPD_RHIME Sinorhizobium meliloti Q8PG47<133>ACD2_XANAC Xanthomonas axonopodis ACPD_AGRT5<151>Q8UG33 Agrobacterium tumefaciens Wash AAN70111<475>AAN70112 Pseudomonas putida ACD1_XANAC<116>Q8PLY1 Xanthomonas axonopodis COG0344<>COG1539 - 4 - Predicted membrane protein ** Dihydroneopterin aldolase Y581_PSEAE<84>Q9I5V5 Pseudomonas aeruginosa AAN66022<75>AAN66023 Pseudomonas putida YA62_NEIMB<56>Q9JZG8 Neisseria meningitidis B Y647_YERPE<108>Q8ZI66 Yersinia pestis CO92 YC61_NEIMA<56>Q9JUL3 Neisseria meningitidis A Y523_VIBCH<153>Q9KUJ6 Vibrio cholerae YC90_SHEON<262>AAN54358 Shewanella oneidensis YG96_PASMU<106>Q9CKC6 Pasteurella multocida Q8XBL2<103>YGIH_ECOLI Escherichia coli EDL933 AAM87079<15>Y647_YERPE Yersinia pestis KIM FOLB_ECOLI<102>YGIH_ECOLI Escherichia coli O6 Q8Z3M7<104>YGIH_SALTY Salmonella typhi CT18 Q8ZLY2<104>YGIH_SALTY Salmonella typhimurium LT2 AAN44575<102>YGIH_SHIFL Shigella flexneri AAO09139<124>Y626_VIBVU Vibrio vulnificus FOLB_HAEIN<83>Y266_HAEIN Haemophilus influenzae FOLB_ECOLI<102>YGIH_ECOLI Escherichia coli K12 Q8XBL2<103>YGIH_ECOLI Escherichia coli O157 COG0024<>COG0052 - 4 - Methionine aminopeptidase ** Ribosomal protein S2 AMPM_BUCAI<263>RS2_BUCAI Buchnera aphidicola APS AMPM_ECOLI<368>RS2_ECOLI Escherichia coli EDL933 AMPM_ECOLI<170>RS2_ECOLI Escherichia coli O6 AAN67211<347>AAN67212 Pseudomonas putida Q8XZJ2<319>RS2_RALSO Ralstonia solanacearum AMPM_SALTY<450>RS2_SALTY Salmonella typhi CT18 AMPM_SALTY<451>RS2_SALTY Salmonella typhimurium LT2 AMPM_ECOLI<170>AAN41821 Shigella flexneri Q8ZH67<435>RS2_YERPE Yersinia pestis CO92 AAO10261<389>AAO10262 Vibrio vulnificus AMPM_ECOLI<368>RS2_ECOLI Escherichia coli K12 AMPM_ECOLI<368>RS2_ECOLI Escherichia coli O157 AMPM_BUCAP<288>RS2_BUCAP Buchnera aphidicola Schiz BAC24538<236>BAC24539 Wigglesworthia brevipalpis AAM86687<351>Q8ZH67 Yersinia pestis KIM RS2_PSEAE<265>Q9HXY1 Pseudomonas aeruginosa RS2_VIBCH<341>Q9KPV1 Vibrio cholerae COG1278<>COG2127 - 4 - Cold shock proteins ** Uncharacterized conserved protein CSPD_ECOLI<323>YLJA_ECOLI Escherichia coli EDL933 CSPD_ECOLI<293>YLJA_ECOLI Escherichia coli O6 Q8XFS1<324>YLJA_SALTY Salmonella typhi CT18 Q8XFS1<324>YLJA_SALTY Salmonella typhimurium LT2 AAN42473<323>AAN42474 Shigella flexneri Q8ZGD6<361>YD67_YERPE Yersinia pestis CO92 CSPD_VIBCH<464>YB43_VIBCH Vibrio cholerae AAO10506<532>AAO10507 Vibrio vulnificus CSPD_ECOLI<323>YLJA_ECOLI Escherichia coli K12 CSPD_ECOLI<323>YLJA_ECOLI Escherichia coli O157 YQ21_PSEAE<358>Q9I0L6 Pseudomonas aeruginosa AAN69603<231>AAN69604 Pseudomonas putida YO65_RALSO<554>Q8XWK8 Ralstonia solanacearum Y837_NEIMB<243>Q9JZZ4 Neisseria meningitidis B YA46_NEIMA<258>Q9JV13 Neisseria meningitidis A AAN55656<194>AAN55657 Shewanella oneidensis COG0452<>COG2003 - 4 - Phosphopantothenoylcysteine synthetase/decarboxylase ** DNA repair proteins Q8P457<97>RADC_XANCP Xanthomonas campestris Q8Z2H3<173>RADC_SALTY Salmonella typhi CT18 Q8ZJP4<194>RADC_YERPE Yersinia pestis CO92 Q8PFR4<97>RADC_XANAC Xanthomonas axonopodis RADC_ECOL6<94>Q8XDA2 Escherichia coli EDL933 RADC_YERPE<80>AAM83687 Yersinia pestis KIM RADC_ECOL6<94>DFP_ECOLI Escherichia coli O6 RADC_XYLFA<75>Q9PGZ7 Xylella fastidiosa RADC_PSEAE<140>Q9HTN4 Pseudomonas aeruginosa AAN70849<126>AAN70850 Pseudomonas putida RADC_SALTY<173>Q8ZL47 Salmonella typhimurium LT2 AAN45124<94>AAN45125 Shigella flexneri AAN57219<123>AAN57220 Shewanella oneidensis RADC_HAEIN<125>DFP_HAEIN Haemophilus influenzae RADC_PASMU<178>Q9CLR0 Pasteurella multocida RADC_ECOLI<94>DFP_ECOLI Escherichia coli K12 RADC_ECOL6<94>Q8XDA2 Escherichia coli O157 COG0313<>COG3107 - 4 - Predicted methyltransferases ** Putative lipoprotein YRAL_ECOLI<65>Q8XAA5 Escherichia coli EDL933 Y552_XYLFA<82>Q9PFV4 Xylella fastidiosa Y8C2_PSEAE<127>Q9HVZ2 Pseudomonas aeruginosa Q8Z3J0<64>Q8Z3I9 Salmonella typhi CT18 Q8ZLU5<64>Q8ZLU4 Salmonella typhimurium LT2 AAN44654<35>AAN44655 Shigella flexneri Q8ZB77<63>Q8ZB76 Yersinia pestis CO92 AAO09104<69>AAO09105 Vibrio vulnificus YRAL_HAEIN<72>YRAM_HAEIN Haemophilus influenzae Y645_PASMU<75>Q9CN03 Pasteurella multocida YRAL_ECOLI<65>YRAM_ECOLI Escherichia coli K12 YRAL_ECOLI<65>Q8XAA5 Escherichia coli O157 AAN66949<178>AAN66950 Pseudomonas putida Q8PCL3<83>Q8PCL2 Xanthomonas campestris AAN53385<89>AAN53386 Shewanella oneidensis Q8PPC1<82>Q8PPC0 Xanthomonas axonopodis COG1309<>COG2220 - 4 - Transcriptional regulator ** Predicted Zn-dependent hydrolases of the beta-lactamase fold Q9X7X0<233>Q9X7X1 Streptomyces coelicolor Q8XQU7<212>Q8XQU6 Ralstonia solanacearum AAO07547<139>AAO07548 Vibrio vulnificus Q9AD74<102>CAD55220 Streptomyces coelicolor Q8PDV3<89>Q8PDV2 Xanthomonas campestris Q8PQS2<240>Q8PQS1 Xanthomonas axonopodis COG0654<>COG2207 - 4 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases ** AraC-type DNA-binding domain-containing proteins Q8U7B0<119>Q8U7A9 Agrobacterium tumefaciens Wash PHHY_PSEAE<178>Q9I6P1 Pseudomonas aeruginosa Q9I0Q0<618>Q9I0P9 Pseudomonas aeruginosa Q8YC92<107>Q8YC91 Brucella melitensis AAN69138<174>AAN69139 Pseudomonas putida Q9A5P4<197>Q9A5P3 Caulobacter crescentus AAN33829<113>AAN33830 Brucella suis Q8PDI3<94>Q8PDI2 Xanthomonas campestris BAC47601<51>BAC47602 Bradyrhizobium japonicum Q8PQH0<97>Q8PQG9 Xanthomonas axonopodis COG0640<>COG2217 - 4 - Predicted transcriptional regulators ** Cation transport ATPase Q8ZS91<47>Q8ZS90 Nostoc sp PCC 7120 SMTB_SYNY3<152>ATZN_SYNY3 Synechocystis sp PCC 6803 Q9ZBF4<70>Q9ZBF3 Streptomyces coelicolor O69710<22>O69711 Mycobacterium tuberculosis CDC1551 O69710<67>O69711 Mycobacterium tuberculosis H37Rv COG0735<>COG2913 - 4 - Fe2+/Zn2+ uptake regulation proteins ** Small protein A (tmRNA-binding) FUR_PSEAE<98>OMLA_PSEAE Pseudomonas aeruginosa AAN70302<98>AAN70303 Pseudomonas putida FUR_NEIMA<219>Q9JX49 Neisseria meningitidis A Q8XVT1<151>Q8XVT0 Ralstonia solanacearum Q8PAL4<89>Q8PAL3 Xanthomonas campestris Q9K1F0<219>FUR_NEIMA Neisseria meningitidis B Q8PMB6<105>Q8PMB5 Xanthomonas axonopodis COG2801<>COG2963 - 4 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives BAC17184<67>BAC17185 Corynebacterium efficiens Q8X9L7<54>Q8X4W6 Escherichia coli EDL933 Q8X9L7<54>Q8X4W6 Escherichia coli EDL933 AAN48946<112>AAN48947 Leptospira interrogans BAC17056<200>BAC17058 Corynebacterium efficiens Q8XG34<264>Q8XGT0 Ralstonia solanacearum AAN42143<150>AAN42144 Shigella flexneri AAN42331<85>AAN42332 Shigella flexneri AAN43407<85>AAN43408 Shigella flexneri Q9AFT0<86>Q8VSG5 Shigella flexneri Q9JMT0<299>Q9JMS8 Escherichia coli K12 COG0583<>COG4125 - 4 - Transcriptional regulator ** Predicted membrane protein Q8ZCK5<52>Q8ZCK6 Yersinia pestis KIM Q9HZW8<47>Q9HZW7 Pseudomonas aeruginosa AAN67863<103>AAN67864 Pseudomonas putida Q8Z3Z7<77>Q8XG43 Salmonella typhi CT18 Q8ZM96<77>Q8XG43 Salmonella typhimurium LT2 Q9I086<103>Q9I085 Pseudomonas aeruginosa AAN69113<81>AAN69114 Pseudomonas putida Q8XPX3<114>Q8XPX2 Ralstonia solanacearum Q92YA2<92>Q92YA1 Sinorhizobium meliloti Q8ZCK6<52>Q8ZCK5 Yersinia pestis CO92 AAO11236<90>AAO11237 Vibrio vulnificus COG0689<>COG1561 - 4 - RNase PH ** Uncharacterized stress-induced protein RNPH_ECOL6<127>Q8XD97 Escherichia coli EDL933 RNPH_YERPE<127>Q8ZJP9 Yersinia pestis KIM RNPH_ECOL6<103>AAN82904 Escherichia coli O6 RNPH_PSEAE<181>Q9HTM3 Pseudomonas aeruginosa AAN70859<141>AAN70860 Pseudomonas putida RNPH_SALTY<126>Q8XEX2 Salmonella typhimurium LT2 AAN45129<103>AAN45130 Shigella flexneri AAO09335<193>AAO09336 Vibrio vulnificus AAN57227<210>AAN57228 Shewanella oneidensis RNPH_ECOLI<127>YICC_ECOLI Escherichia coli K12 RNPH_ECOL6<127>Q8XD97 Escherichia coli O157 Q9PD75<59>RNPH_XYLFA Xylella fastidiosa Q8P5T6<113>RNPH_XANCP Xanthomonas campestris Q8XEX2<126>RNPH_SALTY Salmonella typhi CT18 Q8ZJP9<127>RNPH_YERPE Yersinia pestis CO92 Q9KVD7<107>RNPH_VIBCH Vibrio cholerae Q9CJW6<136>RNPH_PASMU Pasteurella multocida Q8PH64<104>RNPH_XANAC Xanthomonas axonopodis COG0583<>COG1335 - 4 - Transcriptional regulator ** Amidases related to nicotinamidase Q8U9B8<154>Q8U9B7 Agrobacterium tumefaciens Wash Q9I4D7<301>Q9I4D6 Pseudomonas aeruginosa BAC50895<90>BAC50896 Bradyrhizobium japonicum Q92XX9<266>Q92XX8 Sinorhizobium meliloti Q97DL0<127>Q97DK9 Clostridium acetobutylicum Q8U9B7<154>Q8U9B8 Agrobacterium tumefaciens Cereon AAN70813<229>AAN70814 Pseudomonas putida Q8XS20<180>Q8XS19 Ralstonia solanacearum BAC47538<134>BAC47539 Bradyrhizobium japonicum Q92V00<142>Q92UZ9 Sinorhizobium meliloti COG2188<>COG2190 - 4 - Transcriptional regulators ** Phosphotransferase system IIA components Q9CID8<111>Q9CID7 Lactococcus lactis Q9AAR0<2>Q9AAQ9 Caulobacter crescentus Q99WW1<149>Q99WW0 Staphylococcus aureus Mu50 Q99WW1<149>Q99WW0 Staphylococcus aureus N315 Q8NYH1<149>Q8NYH0 Staphylococcus aureus MW2 Q8KST1<174>Q8KST2 Streptococcus mutans Q99XQ4<211>Q99XQ3 Streptococcus pyogenes M1 O32292<344>YYDK_BACSU Bacillus subtilis Q97NW9<185>Q97NW8 Streptococcus pneumoniae TIGR4 AAL00502<35>AAL00503 Streptococcus pneumoniae R6 Q8NZ40<211>Q99XQ3 Streptococcus pyogenes M18 Q8K5K9<211>Q99XQ3 Streptococcus pyogenes M3 COG0231<>COG1509 - 4 - Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) ** Lysine 2,3-aminomutase EFP_XYLFA<44>Q9PAM2 Xylella fastidiosa EFP_XANCP<102>Q8P8G8 Xanthomonas campestris EFP_VIBCH<33>Q9KNS0 Vibrio cholerae EFP_HAEIN<38>YJEK_HAEIN Haemophilus influenzae EFP_XANAC<103>Q8PJZ6 Xanthomonas axonopodis Q8XDQ8<42>EFP_ECOLI Escherichia coli EDL933 Q8ZIY1<36>EFP_YERPE Yersinia pestis KIM AAN83653<42>EFP_ECOLI Escherichia coli O6 Q8Z1A2<41>EFP_SALTY Salmonella typhi CT18 Q8ZKB8<41>EFP_SALTY Salmonella typhimurium LT2 AAN45720<42>EFP_ECOLI Shigella flexneri Q8ZIY1<36>EFP_YERPE Yersinia pestis CO92 AAO09719<33>AAO09720 Vibrio vulnificus Q9CPE5<36>EFP_PASMU Pasteurella multocida YJEK_ECOLI<42>EFP_ECOLI Escherichia coli K12 Q8XDQ8<42>EFP_ECOLI Escherichia coli O157 Y020_BUCAP<26>EFP_BUCAP Buchnera aphidicola Schiz COG0789<>COG1902 - 4 - Predicted transcriptional regulators ** NADH:flavin oxidoreductases, Old Yellow Enzyme family Q9A3W9<86>Q9A3W8 Caulobacter crescentus Q9F390<84>Q9F389 Streptomyces coelicolor Q8YB83<86>Q8YB82 Brucella melitensis Q8XTH4<76>Q8XTH3 Ralstonia solanacearum COG1620<>COG2186 - 4 - L-lactate permease ** Transcriptional regulators Q9RT60<180>Q9RT59 Deinococcus radiodurans O07007<422>YVFH_BACSU Bacillus subtilis Q9HV39<329>Q9HV38 Pseudomonas aeruginosa AAN70306<257>AAN70307 Pseudomonas putida Q9JY70<431>Q9JY69 Neisseria meningitidis B Q9JT55<428>Q9JT54 Neisseria meningitidis A COG0178<>COG0629 - 4 - Excinuclease ATPase subunit ** Single-stranded DNA-binding protein UVRA_ECO57<255>SSB_ECOLI Escherichia coli EDL933 AAN83474<255>SSB_ECOLI Escherichia coli O6 UVRA_RHIME<287>SSB_RHIME Sinorhizobium meliloti UVRA_SALTY<248>SSB_SALTY Salmonella typhi CT18 UVRA_SALTY<248>SSB_SALTY Salmonella typhimurium LT2 Q8ZJ07<458>Q8ZJ06 Yersinia pestis CO92 UVRA_HAEIN<154>SSB_HAEIN Haemophilus influenzae UVRA_RICCN<103>Q92G30 Rickettsia conorii UVRA_RICPR<107>SSB_RICPR Rickettsia prowazekii UVRA_ECOLI<254>SSB_ECOLI Escherichia coli K12 UVRA_ECO57<255>SSB_ECOLI Escherichia coli O157 Q8UF87<307>Q8UF86 Agrobacterium tumefaciens Wash Q8UF87<217>Q8UF86 Agrobacterium tumefaciens Cereon AAN45567<191>UVRA_ECOLI Shigella flexneri Q9CJP4<172>UVRA_PASMU Pasteurella multocida COG0385<>COG0583 - 4 - Predicted Na+-dependent transporter ** Transcriptional regulator Q8U942<81>Q8U941 Agrobacterium tumefaciens Wash Q8XBM8<90>Q8XBM6 Escherichia coli EDL933 Q8U941<81>Q8U942 Agrobacterium tumefaciens Cereon Q9ZBW3<153>Q9ZBW2 Streptomyces coelicolor AAN81392<90>AAN81393 Escherichia coli O6 Q8XWD7<52>Q8XWD6 Ralstonia solanacearum Q988D8<49>Q988D7 Mesorhizobium loti Q8Z4W6<90>Q93IN6 Salmonella typhi CT18 Q8ZN92<90>Q8ZN91 Salmonella typhimurium LT2 YFER_ECOLI<90>AAN43972 Shigella flexneri YFER_ECOLI<90>YFEH_ECOLI Escherichia coli K12 Q8XBM8<90>Q8XBM6 Escherichia coli O157 COG0438<>COG0500 - 4 - Glycosyltransferase ** SAM-dependent methyltransferases Q9RQU9<25>Q9A9H1 Caulobacter crescentus Q8NLS7<602>Q8NLS5 Corynebacterium glutamicum O69493<53>O69492 Mycobacterium leprae Q97AB2<577>Q97AB1 Thermoplasma volcanium P96406<36>P96407 Mycobacterium tuberculosis CDC1551 P96406<36>P96407 Mycobacterium tuberculosis H37Rv COG0642<>COG0784 - 4 - Signal transduction histidine kinase ** CheY-like receiver Q8YLH1<165>Q8YLH0 Nostoc sp PCC 7120 P74137<184>P74138 Synechocystis sp PCC 6803 Q8UDY0<210>Q8UDX9 Agrobacterium tumefaciens Wash Q8UDY0<171>Q8UDX9 Agrobacterium tumefaciens Cereon Q8PHI1<85>Q8PHI0 Xanthomonas axonopodis Q8P913<84>Q8P912 Xanthomonas campestris COG1733<>COG2910 - 4 - Predicted transcriptional regulators ** Putative NADH-flavin reductase BAC18344<244>BAC18345 Corynebacterium efficiens AAN24292<168>AAN24293 Bifidobacterium longum Q8UDW9<158>Q8UDW8 Agrobacterium tumefaciens Wash Q8UDW9<98>Q8UDW8 Agrobacterium tumefaciens Cereon Q9PMB5<193>Q9PMB4 Campylobacter jejuni BAC51100<150>BAC51101 Bradyrhizobium japonicum COG0218<>COG2863 - 4 - Predicted GTPase ** Cytochrome c553 ENGB_XANCP<204>Q8P5E3 Xanthomonas campestris ENGB_NEIMA<206>Q9JRF2 Neisseria meningitidis A ENGB_VIBCH<98>Q9KVM9 Vibrio cholerae Q8XV44<284>ENGB_RALSO Ralstonia solanacearum Q9JRF2<200>ENGB_NEIMB Neisseria meningitidis B AAO09401<147>AAO09402 Vibrio vulnificus AAN57625<170>AAN57626 Shewanella oneidensis Q8PPG2<201>ENGB_XANAC Xanthomonas axonopodis COG0697<>COG1522 - 4 - Permeases of the drug/metabolite transporter (DMT) superfamily ** Transcriptional regulators Q9I0R0<133>Q9I0Q9 Pseudomonas aeruginosa Q9HV25<155>Q9HV24 Pseudomonas aeruginosa AAN69887<134>AAN69888 Pseudomonas putida Q92SM8<135>Q92SM7 Sinorhizobium meliloti Q9HQ34<143>Q9HQ33 Halobacterium sp NRC-1 Q98F66<132>Q98F65 Mesorhizobium loti AAO07680<148>AAO07681 Vibrio vulnificus COG1609<>COG1925 - 4 - Transcriptional regulators ** Phosphotransferase system, HPr-related proteins AAN66417<285>AAN66418 Pseudomonas putida Q8XVH1<227>Q8XVH0 Ralstonia solanacearum Q8P874<163>PTF1_XANCP Xanthomonas campestris Q8PJN0<162>Q8PJM9 Xanthomonas axonopodis Q9HY55<328>Q9HY54 Pseudomonas aeruginosa Q9KM70<339>Q9KM69 Vibrio cholerae AAO07172<458>AAO07173 Vibrio vulnificus COG0318<>COG1309 - 4 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II ** Transcriptional regulator BAC47589<365>BAC47590 Bradyrhizobium japonicum O06168<68>O06169 Mycobacterium tuberculosis CDC1551 O06168<116>O06169 Mycobacterium tuberculosis H37Rv Q9RYK4<85>Q9RYK3 Deinococcus radiodurans Q9RL08<109>Q9RL07 Streptomyces coelicolor COG1024<>COG1028 - 4 - Enoyl-CoA hydratase/carnithine racemase ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Q9A7B0<153>Q9A7A9 Caulobacter crescentus Q9HL00<217>Q9HKZ9 Thermoplasma acidophilum O06542<1198>O06544 Mycobacterium tuberculosis CDC1551 BAC48207<135>BAC48208 Bradyrhizobium japonicum BAC48214<106>BAC48215 Bradyrhizobium japonicum P71852<55>P71851 Mycobacterium tuberculosis CDC1551 P71852<55>P71851 Mycobacterium tuberculosis H37Rv COG0214<>COG1167 - 4 - Pyridoxine biosynthesis enzyme ** Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs AAO05904<328>AAO05905 Staphylococcus epidermidis BAC14643<127>BAC14644 Oceanobacillus iheyhensis Q99W85<104>Q99W84 Staphylococcus aureus Mu50 Q99W85<104>Q99W84 Staphylococcus aureus N315 Q8Y5G3<126>Q8Y5G2 Listeria monocytogenes Q929S0<124>Q929R9 Listeria innocua Q8NS92<36>Q8NS91 Corynebacterium glutamicum Q99W85<104>Q99W84 Staphylococcus aureus MW2 Q9CLJ7<67>Q9CLJ6 Pasteurella multocida Q8R607<107>Q8RDP7 Fusobacterium nucleatum COG0028<>COG0583 - 4 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] ** Transcriptional regulator ILVX_BACSU<155>ALSR_BACSU Bacillus subtilis Q9L123<95>Q9L122 Streptomyces coelicolor Q9HUR2<101>Q9HUR1 Pseudomonas aeruginosa AAN68969<186>AAN68970 Pseudomonas putida AAN67016<114>AAN67017 Pseudomonas putida BAC51680<96>BAC51681 Bradyrhizobium japonicum COG0778<>COG1733 - 4 - Nitroreductase ** Predicted transcriptional regulators Q9RT01<72>Q9RT00 Deinococcus radiodurans Q97F22<141>Q97F21 Clostridium acetobutylicum AAN58104<98>AAN58105 Streptococcus mutans YODB_BACSU<130>V12C_BACSU Bacillus subtilis Q97KR8<156>Q97KR7 Clostridium acetobutylicum Q97J03<149>Q97J02 Clostridium acetobutylicum COG0583<>COG0620 - 4 - Transcriptional regulator ** Methionine synthase II (cobalamin-independent) METR_ECOLI<236>Q8X8L5 Escherichia coli EDL933 Q8ZAL2<91>AAM84031 Yersinia pestis KIM AAN83183<118>AAN83184 Escherichia coli O6 METR_SALTY<249>METE_SALTY Salmonella typhimurium LT2 METR_ECOLI<236>AAN45342 Shigella flexneri AAO10599<322>AAO10600 Vibrio vulnificus AAN53893<200>AAN53894 Shewanella oneidensis METR_ECOLI<237>METE_ECOLI Escherichia coli K12 METR_ECOLI<236>Q8X8L5 Escherichia coli O157 METR_BUCAP<141>METE_BUCAP Buchnera aphidicola Schiz Q8XS05<116>Q8XS04 Ralstonia solanacearum Q8Z3B6<249>METR_SALTY Salmonella typhi CT18 Q8ZAL3<106>Q8ZAL2 Yersinia pestis CO92 METE_PASMU<299>Q9CNK8 Pasteurella multocida COG1280<>COG1522 - 4 - Putative threonine efflux protein ** Transcriptional regulators Q8NMC2<87>Q8NMC1 Corynebacterium glutamicum Q9HVR4<142>Q9HVR3 Pseudomonas aeruginosa AAN69253<112>AAN69254 Pseudomonas putida Q9KRD0<78>Q9KRC9 Vibrio cholerae AAO07959<122>AAO07960 Vibrio vulnificus AAO08149<75>AAO08150 Vibrio vulnificus Q9ZEP1<119>Q9X8L9 Streptomyces coelicolor COG0665<>COG1522 - 4 - Glycine/D-amino acid oxidases (deaminating) ** Transcriptional regulators Q8UAG0<60>Q8UAG1 Agrobacterium tumefaciens Cereon AAN70835<157>AAN70836 Pseudomonas putida DAD1_RALSO<113>Q8Y0W6 Ralstonia solanacearum DADA_XANCP<151>Q8P4Q8 Xanthomonas campestris Q987J3<191>Q987J2 Mesorhizobium loti DADA_XANAC<149>Q8PGC8 Xanthomonas axonopodis Q8UAG1<189>Q8UAG0 Agrobacterium tumefaciens Wash Q92Y60<236>Q92Y59 Sinorhizobium meliloti COG0673<>COG1609 - 4 - Predicted dehydrogenases and related proteins ** Transcriptional regulators Q8NNS7<127>Q8NNS6 Corynebacterium glutamicum Q8U7T6<115>Q8U7T5 Agrobacterium tumefaciens Wash BAC15196<152>BAC15197 Oceanobacillus iheyhensis Q9RDH5<231>Q9RDH4 Streptomyces coelicolor Q98KE8<190>Q98KE7 Mesorhizobium loti Q92UQ7<234>Q92UQ6 Sinorhizobium meliloti Q8NTY1<140>Q8NTY0 Corynebacterium glutamicum Q8U7T5<115>Q8U7T6 Agrobacterium tumefaciens Cereon COG0346<>COG0583 - 4 - Lactoylglutathione lyase and related lyases ** Transcriptional regulator Q8U8V9<116>Q8U8W0 Agrobacterium tumefaciens Cereon Q9I0T8<91>Q9I0T7 Pseudomonas aeruginosa AAN68182<278>AAN68183 Pseudomonas putida BAC48512<159>BAC48513 Bradyrhizobium japonicum AAN54069<170>AAN54070 Shewanella oneidensis Q8U8W0<116>Q8U8V9 Agrobacterium tumefaciens Wash Q8XRG7<91>Q8XRG6 Ralstonia solanacearum Q930J5<112>Q930J4 Sinorhizobium meliloti COG0477<>COG1414 - 4 - Permeases of the major facilitator superfamily ** Transcriptional regulator Q8NL90<1045>Q8NL89 Corynebacterium glutamicum Q9I6Q3<306>Q9I6Q2 Pseudomonas aeruginosa AAN42998<66>AAN42999 Shigella flexneri BAC19671<50>BAC19672 Corynebacterium efficiens Q8XCN4<66>Q8XCN2 Escherichia coli EDL933 Q8NLB8<35>Q8NLB7 Corynebacterium glutamicum AAN80695<66>AAN80696 Escherichia coli O6 BAC48660<163>BAC48661 Bradyrhizobium japonicum Q8ZNZ7<176>Q8ZNZ6 Salmonella typhimurium LT2 KDGR_ECOLI<66>YEBQ_ECOLI Escherichia coli K12 Q8XCN4<66>Q8XCN2 Escherichia coli O157 COG1452<>COG3178 - 4 - Organic solvent tolerance protein OstA ** Predicted phosphotransferase related to Ser/Thr protein kinases OSTA_PSEAE<127>Q9I5U1 Pseudomonas aeruginosa Q9JSN9<70>Q9JSN8 Neisseria meningitidis A Q8Y222<169>Q8Y221 Ralstonia solanacearum Q9K188<202>Q9K187 Neisseria meningitidis B AAN56621<158>AAN56622 Shewanella oneidensis COG0451<>COG0583 - 4 - Nucleoside-diphosphate-sugar epimerases ** Transcriptional regulator Q8UDD7<91>Q8UDD6 Agrobacterium tumefaciens Wash Q8UDD7<7>Q8UDD6 Agrobacterium tumefaciens Cereon Q9HTL5<138>Q9HTL4 Pseudomonas aeruginosa Q987Q7<844>Q987Q6 Mesorhizobium loti Q92Y00<137>Q92XZ9 Sinorhizobium meliloti Q8XU59<101>Q8XU58 Ralstonia solanacearum Q98FD3<115>Q98FD2 Mesorhizobium loti Q8PFE5<93>Q8PFE4 Xanthomonas axonopodis COG0492<>COG1674 - 4 - Thioredoxin reductase ** DNA segregation ATPase FtsK/SpoIIIE and related proteins Q8P994<286>Q8P993 Xanthomonas campestris Q8PL01<284>Q8PL00 Xanthomonas axonopodis BAC24637<291>BAC24638 Wigglesworthia brevipalpis Q9I0M3<228>Q9I0M2 Pseudomonas aeruginosa Q8XWX9<219>Q8XWX8 Ralstonia solanacearum COG0583<>COG1275 - 4 - Transcriptional regulator ** Tellurite resistance protein and related permeases Q9CII3<155>Q9CII2 Lactococcus lactis O88073<71>O88074 Streptomyces coelicolor Q8P5F0<96>Q8P5E9 Xanthomonas campestris AAO10200<136>AAO10201 Vibrio vulnificus Q9KPP3<111>Q9KPP2 Vibrio cholerae COG0583<>COG0657 - 4 - Transcriptional regulator ** Esterase/lipase Q8UCK4<201>Q8UCK3 Agrobacterium tumefaciens Wash Q8UCK4<201>Q8UCK3 Agrobacterium tumefaciens Cereon AAN69405<147>AAN69406 Pseudomonas putida Q8XQV8<282>Q8XQV7 Ralstonia solanacearum YM82_MYCTU<269>Q50681 Mycobacterium tuberculosis CDC1551 Q92SG8<158>Q92SG7 Sinorhizobium meliloti Q92NE5<120>Q92NE4 Sinorhizobium meliloti COG0477<>COG1802 - 4 - Permeases of the major facilitator superfamily ** Transcriptional regulators Q8YJH9<1033>Q8YJH7 Brucella melitensis Q8YD97<328>Q8YD96 Brucella melitensis Q8ZNH0<50>Q8ZNG9 Salmonella typhimurium LT2 Q9RKW9<138>Q9RKX0 Streptomyces coelicolor Q8XSN1<164>Q8XSN0 Ralstonia solanacearum COG0318<>COG1960 - 4 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II ** Acyl-CoA dehydrogenases AAN69653<211>AAN69654 Pseudomonas putida BAC46245<118>BAC46246 Bradyrhizobium japonicum Q8ZXA3<105>Q8ZXA2 Pyrobaculum aerophilum P96842<69>P96843 Mycobacterium tuberculosis CDC1551 P96842<48>P96843 Mycobacterium tuberculosis H37Rv COG1017<>COG1959 - 4 - Hemoglobin-like flavoprotein ** Predicted transcriptional regulator BAC12247<133>BAC12248 Oceanobacillus iheyhensis AAO09756<131>AAO09757 Vibrio vulnificus Q9RYR6<113>Q9RYR5 Deinococcus radiodurans Q8XTZ8<249>Q8XTZ7 Ralstonia solanacearum YA57_BACHD<330>Q9RC40 Bacillus halodurans COG0686<>COG1522 - 4 - Alanine dehydrogenase ** Transcriptional regulators Q98N04<158>Q98N03 Mesorhizobium loti Q92PV2<158>Q92PV1 Sinorhizobium meliloti Q9A2I8<120>Q9A2I7 Caulobacter crescentus BAC48443<64>BAC48444 Bradyrhizobium japonicum Q9KQU4<157>Q9KQU3 Vibrio cholerae AAO11282<156>AAO11283 Vibrio vulnificus O33321<60>DHA_MYCTU Mycobacterium tuberculosis CDC1551 O33321<90>DHA_MYCTU Mycobacterium tuberculosis H37Rv COG0745<>COG1538 - 4 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** Outer membrane protein CUSR_ECOLI<157>Q8XBY3 Escherichia coli EDL933 CUSR_ECOLI<157>AAN79133 Escherichia coli O6 Q8XQ31<112>Q8XQ30 Ralstonia solanacearum AAN42125<157>AAN42126 Shigella flexneri CUSR_ECOLI<157>CUSC_ECOLI Escherichia coli K12 CUSR_ECOLI<157>Q8XBY3 Escherichia coli O157 Q9I0W0<513>Q9RLJ1 Pseudomonas aeruginosa Q8PIU3<106>Q8PIU2 Xanthomonas axonopodis COG0583<>COG0625 - 4 - Transcriptional regulator ** Glutathione S-transferase Q9I4F4<202>Q9I4F3 Pseudomonas aeruginosa Q8XU85<110>Q8XU84 Ralstonia solanacearum Q92XF4<116>Q92XF3 Sinorhizobium meliloti Q9HXG2<124>Q9HXG1 Pseudomonas aeruginosa AAO07795<173>AAO07796 Vibrio vulnificus COG0583<>COG4638 - 4 - Transcriptional regulator ** Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Q8XA74<136>HCAE_ECOLI Escherichia coli EDL933 Q8XT94<126>Q8XT93 Ralstonia solanacearum Q92ZQ0<148>Q92ZP9 Sinorhizobium meliloti AAN44083<133>AAN44084 Shigella flexneri HCAR_ECOLI<136>HCAE_ECOLI Escherichia coli K12 Q8XA74<136>HCAE_ECOLI Escherichia coli O157 Q8PDN8<128>Q8PDN7 Xanthomonas campestris Q8PQL2<126>Q8PQL1 Xanthomonas axonopodis COG1028<>COG1846 - 4 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Transcriptional regulators Q97DJ3<178>Q97DJ2 Clostridium acetobutylicum Q8XUP8<270>Q8XUP7 Ralstonia solanacearum BAC52514<61>BAC52515 Bradyrhizobium japonicum Q8NTM1<131>Q8NTM0 Corynebacterium glutamicum COG1273<>COG3285 - 4 - Uncharacterized conserved protein ** Predicted eukaryotic-type DNA primase BAC14989<111>BAC14990 Oceanobacillus iheyhensis O05866<116>Y938_MYCTU Mycobacterium tuberculosis CDC1551 O05866<116>Y938_MYCTU Mycobacterium tuberculosis H37Rv Q9KAS9<135>Q9KAS8 Bacillus halodurans Q9XAF7<47>Q9XAF8 Streptomyces coelicolor BAC52038<117>BAC52039 Bradyrhizobium japonicum COG0450<>COG0583 - 4 - Peroxiredoxin ** Transcriptional regulator Q9FBP5<138>Q9FBP4 Streptomyces coelicolor AAN33893<126>AAN33894 Brucella suis Q9KTZ9<204>Q9KTZ8 Vibrio cholerae OXYR_MYCLE<110>Q9CBF5 Mycobacterium leprae Q8YCF4<157>Q8YCF3 Brucella melitensis AAO08974<198>AAO08975 Vibrio vulnificus COG0665<>COG1396 - 4 - Glycine/D-amino acid oxidases (deaminating) ** Predicted transcriptional regulators Q9A5W8<214>Q9A5W7 Caulobacter crescentus Q988N2<130>Q988N1 Mesorhizobium loti AAN54332<235>AAN54333 Shewanella oneidensis AAN67858<115>AAN67859 Pseudomonas putida COG0583<>COG1380 - 4 - Transcriptional regulator ** Putative effector of murein hydrolase LrgA YWBI_BACSU<106>YWBH_BACSU Bacillus subtilis AAN29273<122>AAN29274 Brucella suis Q8Z1R4<104>Q8XGP9 Salmonella typhi CT18 Q8ZKG0<104>Q8XGP9 Salmonella typhimurium LT2 AAN54119<170>AAN54120 Shewanella oneidensis Q9HYH3<96>Q9HYH2 Pseudomonas aeruginosa Q8YFC5<188>Q8YFC4 Brucella melitensis AAN70199<98>AAN70200 Pseudomonas putida COG0654<>COG1846 - 4 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases ** Transcriptional regulators Q9RK20<172>Q9RK19 Streptomyces coelicolor BAC45611<204>BAC45612 Bradyrhizobium japonicum Q8ZPG3<45>Q8ZPG2 Salmonella typhimurium LT2 O31541<163>O06489 Bacillus subtilis BAC49486<98>BAC49487 Bradyrhizobium japonicum BAC50241<85>BAC50242 Bradyrhizobium japonicum COG0583<>COG2259 - 4 - Transcriptional regulator ** Predicted membrane protein Q9K179<108>Q9JR31 Neisseria meningitidis B AAN56316<163>AAN56317 Shewanella oneidensis BAC51817<45>BAC51818 Bradyrhizobium japonicum Q9JR31<108>Q9JSP9 Neisseria meningitidis A Q8PGB0<107>Q8PGA9 Xanthomonas axonopodis COG0583<>COG2828 - 4 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria YRAN_BACSU<145>YRAM_BACSU Bacillus subtilis Q8X925<121>Q8X924 Escherichia coli EDL933 Q8U835<94>Q8U836 Agrobacterium tumefaciens Cereon AAN79318<121>YBHH_ECOLI Escherichia coli O6 AAN67668<147>AAN67669 Pseudomonas putida YBHD_ECOLI<121>YBHH_ECOLI Escherichia coli K12 Q8X925<121>Q8X924 Escherichia coli O157 Q8U836<94>Q8U835 Agrobacterium tumefaciens Wash BAC52362<63>BAC52363 Bradyrhizobium japonicum Q987N7<100>Q987N6 Mesorhizobium loti COG0160<>COG1522 - 4 - 4-aminobutyrate aminotransferase and related aminotransferases ** Transcriptional regulators Q972L8<175>Q972L7 Sulfolobus tokodaii AAN68965<144>AAN68966 Pseudomonas putida Q8U1H7<123>Q8U1H6 Pyrococcus furiosus Q92MD2<220>Q92MD1 Sinorhizobium meliloti COG0583<>COG1473 - 4 - Transcriptional regulator ** Metal-dependent amidase/aminoacylase/carboxypeptidase Q8X8Q1<176>Q8X8Q0 Escherichia coli EDL933 Q9HZS6<101>Q9HZS5 Pseudomonas aeruginosa AAN00390<279>AAN00391 Streptococcus agalactiae Q985H5<76>Q985H4 Mesorhizobium loti ABGA_ECOLI<161>ABGR_ECOLI Escherichia coli K12 Q8X8Q0<161>Q8X8Q1 Escherichia coli O157 COG0654<>COG1309 - 3 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases ** Transcriptional regulator Q9S1P2<64>Q9S1P1 Streptomyces coelicolor Q9S1N9<71>Q9S1N8 Streptomyces coelicolor Q9RK22<149>Q9RK21 Streptomyces coelicolor Q9EWD7<73>Q9EWD6 Streptomyces coelicolor Q98FB6<83>Q98FB5 Mesorhizobium loti Q8NR95<154>Q8NR94 Corynebacterium glutamicum Q9K463<147>Q9K462 Streptomyces coelicolor Q9F3D3<54>Q9F3D2 Streptomyces coelicolor COG0604<>COG1309 - 3 - NADPH:quinone reductase and related Zn-dependent oxidoreductases ** Transcriptional regulator Q9WX20<129>Q9WX19 Streptomyces coelicolor Q93J29<81>Q93J28 Streptomyces coelicolor Q983S8<98>Q983S7 Mesorhizobium loti Q9ADD9<156>Q9ADD8 Streptomyces coelicolor Q9F3C3<100>Q9F3C2 Streptomyces coelicolor Q8Y1Q4<50>Q8Y1Q3 Ralstonia solanacearum COG0583<>COG1960 - 3 - Transcriptional regulator ** Acyl-CoA dehydrogenases Q9RYH7<121>Q9RYH6 Deinococcus radiodurans Q8U7N0<97>Q8U7N1 Agrobacterium tumefaciens Cereon Q8YHA6<102>Q8YHA5 Brucella melitensis AAN65790<161>AAN65791 Pseudomonas putida AAN68048<126>AAN68049 Pseudomonas putida BAC52509<126>BAC52510 Bradyrhizobium japonicum Q92V68<188>Q92V67 Sinorhizobium meliloti Q8U7N1<97>Q8U7N0 Agrobacterium tumefaciens Wash Q9I671<221>Q9I670 Pseudomonas aeruginosa Q9I0T4<174>Q9I0T3 Pseudomonas aeruginosa Q9HY33<114>Q9HY32 Pseudomonas aeruginosa AAN30005<102>AAN30006 Brucella suis Q98HG5<103>Q98HG4 Mesorhizobium loti COG1522<>COG3185 - 3 - Transcriptional regulators ** 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Q8XUT3<161>Q8XUT2 Ralstonia solanacearum Q92LT2<131>Q92LT1 Sinorhizobium meliloti Q9S2F4<126>Q9S2F3 Streptomyces coelicolor Q8XF91<59>Q8XFM7 Ralstonia solanacearum Q8XF91<59>Q8XFM7 Ralstonia solanacearum BAC45604<98>BAC45605 Bradyrhizobium japonicum Q983J0<120>Q983I9 Mesorhizobium loti COG1131<>COG1309 - 3 - ABC-type multidrug transport system, ATPase component ** Transcriptional regulator Q9K4C8<94>Q9K4C7 Streptomyces coelicolor AAO03690<166>AAO03691 Staphylococcus epidermidis Q9CGX8<156>Q9CGX7 Lactococcus lactis BAC12675<293>BAC12676 Oceanobacillus iheyhensis Q9S2B2<64>Q9S2B1 Streptomyces coelicolor Q9F2Y9<97>Q9F2Y8 Streptomyces coelicolor Q9KE56<169>Q9KE55 Bacillus halodurans COG0061<>COG0576 - 3 - Predicted sugar kinase ** Molecular chaperone GrpE (heat shock protein) PPNK_YERPE<124>Q8ZH08 Yersinia pestis CO92 PPNK_VIBCH<146>GRPE_VIBCH Vibrio cholerae AAN54584<49>AAN54585 Shewanella oneidensis PPNK_HAEIN<64>GRPE_HAEIN Haemophilus influenzae PPNK_PASMU<151>GRPE_PASMU Pasteurella multocida GRP2_BUCAI<117>PPNK_BUCAI Buchnera aphidicola APS Q8X9C2<123>PPNK_ECO57 Escherichia coli EDL933 BAC24255<104>BAC24256 Wigglesworthia brevipalpis Q8ZH08<124>PPNK_YERPE Yersinia pestis KIM AAN81585<123>AAN81587 Escherichia coli O6 Q8XEY8<123>PPNK_SALTY Salmonella typhi CT18 Q8XEY8<123>PPNK_SALTY Salmonella typhimurium LT2 AAN44168<123>PPNK_ECOLI Shigella flexneri AAO08889<146>AAO08890 Vibrio vulnificus GRPE_ECOLI<123>PPNK_ECOLI Escherichia coli K12 Q8X9C2<123>PPNK_ECO57 Escherichia coli O157 GRP2_BUCAP<106>PPNK_BUCAP Buchnera aphidicola Schiz COG0129<>COG0364 - 3 - Dihydroxyacid dehydratase/phosphogluconate dehydratase ** Glucose-6-phosphate 1-dehydrogenase EDD_HELPY<66>G6PD_HELPY Helicobacter pylori 26695 EDD_HELPJ<66>G6PD_HELPJ Helicobacter pylori J99 Q8XPS9<364>Q8XPS8 Ralstonia solanacearum Q9JYX2<568>Q9JYX1 Neisseria meningitidis B Q9JTW0<540>Q9JTV9 Neisseria meningitidis A COG0179<>COG0360 - 3 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) ** Ribosomal protein S6 BAC08830<116>BAC08831 Synechococcus elongatus RS6_ANASP<175>Q8YMX1 Nostoc sp PCC 7120 RS6_SYNY3<305>P73637 Synechocystis sp PCC 6803 COG0183<>COG1028 - 3 - Acetyl-CoA acetyltransferase ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) O69505<105>O69504 Mycobacterium leprae Q9HV23<255>Q9HV22 Pseudomonas aeruginosa Q9L0U3<163>Q9L0U2 Streptomyces coelicolor AAN66208<97>AAN66209 Pseudomonas putida O53665<142>O86361 Mycobacterium tuberculosis CDC1551 O53665<142>O86361 Mycobacterium tuberculosis H37Rv COG0227<>COG1302 - 3 - Ribosomal protein L28 ** Uncharacterized protein conserved in bacteria AAO04496<358>AAO04497 Staphylococcus epidermidis RL28_BACSU<277>O34318 Bacillus subtilis RL28_CLOAB<195>Q97IB6 Clostridium acetobutylicum RL28_STAAM<443>Q99UP3 Staphylococcus aureus Mu50 RL28_STAAM<443>Q99UP3 Staphylococcus aureus N315 BAC13470<486>BAC13471 Oceanobacillus iheyhensis RL28_STAAM<443>Q99UP3 Staphylococcus aureus MW2 Q8R9U2<152>RL28_THETN Thermoanaerobacter tengcongensis Q8XJM3<260>RL28_CLOPE Clostridium perfringens Q92AJ3<298>RL28_LISMO Listeria monocytogenes Q92AJ3<299>RL28_LISMO Listeria innocua Q9K9Z5<274>RL28_BACHD Bacillus halodurans COG0232<>COG0316 - 3 - dGTP triphosphohydrolase ** Uncharacterized conserved protein DGT1_CAUCR<89>Q9A6S4 Caulobacter crescentus DGT1_AGRT5<152>Q8UEP2 Agrobacterium tumefaciens Wash DGT1_AGRT5<152>Q8UEP2 Agrobacterium tumefaciens Cereon DGT1_BRUME<167>Q8YGR7 Brucella melitensis BAC50023<125>BAC50024 Bradyrhizobium japonicum DG1A_RHILO<77>Q98LB8 Mesorhizobium loti AAN29803<167>DGT1_BRUME Brucella suis Q92Q33<217>DGT1_RHIME Sinorhizobium meliloti Q92JH4<229>DGT1_RICCN Rickettsia conorii Y063_RICPR<250>DGT1_RICPR Rickettsia prowazekii COG0313<>COG1928 - 3 - Predicted methyltransferases ** Dolichyl-phosphate-mannose--protein O-mannosyl transferase Q9RKD4<67>Q9RKD3 Streptomyces coelicolor BAC17774<3>BAC17775 Corynebacterium efficiens Q8NRZ6<69>Q8NRZ5 Corynebacterium glutamicum Q9CD61<79>Q9CD60 Mycobacterium leprae YA02_MYCTU<83>YA03_MYCTU Mycobacterium tuberculosis CDC1551 YA02_MYCTU<83>YA03_MYCTU Mycobacterium tuberculosis H37Rv COG0321<>COG1544 - 3 - Lipoate-protein ligase B ** Ribosome-associated protein Y (PSrp-1) BAC08384<160>BAC08385 Synechococcus elongatus Q8YSA5<586>LIPB_ANASP Nostoc sp PCC 7120 LRTA_SYNY3<447>LIPB_SYNY3 Synechocystis sp PCC 6803 COG0365<>COG1960 - 3 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases ** Acyl-CoA dehydrogenases Q8ZV36<375>Q8ZV35 Pyrobaculum aerophilum Q93JE4<132>Q93JE3 Streptomyces coelicolor Q97WQ9<101>Q97WQ8 Sulfolobus solfataricus Q96ZN0<74>Q96ZM9 Sulfolobus tokodaii COG0642<>COG0745 - 3 - Signal transduction histidine kinase ** Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain O31138<186>Q9I529 Pseudomonas aeruginosa AAN67271<95>AAN67272 Pseudomonas putida O66656<285>O66657 Aquifex aeolicus Q9RWC6<135>Q9RWC5 Deinococcus radiodurans COG0642<>COG1429 - 3 - Signal transduction histidine kinase ** Cobalamin biosynthesis protein CobN and related Mg-chelatases Q8YWC5<85>Q8YWC4 Nostoc sp PCC 7120 BAC08451<159>BAC08452 Synechococcus elongatus P74110<192>P74111 Synechocystis sp PCC 6803 COG0681<>COG1311 - 3 - Signal peptidase I ** Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B Q8PX78<1274>Q8PX77 Methanosarcina mazei Q8TUN0<620>Q8TUM9 Methanosarcina acetivorans Q9HMR8<460>DP2S_HALN1 Halobacterium sp NRC-1 DP2S_ARCFU<20>O28483 Archaeoglobus fulgidus COG0719<>COG2345 - 3 - ABC-type transport system involved in Fe-S cluster assembly, permease component ** Predicted transcriptional regulator BAC08042<133>BAC08043 Synechococcus elongatus Q8YU63<226>Q8YU62 Nostoc sp PCC 7120 Q55789<256>Y074_SYNY3 Synechocystis sp PCC 6803 COG0803<>COG1121 - 3 - ABC-type metal ion transport system, periplasmic component/surface adhesin ** ABC-type Mn/Zn transport systems, ATPase component Y034_TREPA<198>Y035_TREPA Treponema pallidum Q9YEP8<11>Q9YEP7 Aeropyrum pernix Q8YR75<93>Q8YR74 Nostoc sp PCC 7120 COG1226<>COG4992 - 3 - Kef-type K+ transport systems, predicted NAD-binding component ** Ornithine/acetylornithine aminotransferase Q8YXX7<199>ARGD_ANASP Nostoc sp PCC 7120 P73132<124>ARGD_SYNY3 Synechocystis sp PCC 6803 Q9PDF3<68>ARGD_XYLFA Xylella fastidiosa ARGD_XANCP<73>Q8P5Q3 Xanthomonas campestris ARGD_XANAC<73>Q8PH30 Xanthomonas axonopodis COG1396<>COG2224 - 3 - Predicted transcriptional regulators ** Isocitrate lyase Q9A7G0<262>Q9A7F9 Caulobacter crescentus Q93J63<382>Q93J62 Streptomyces coelicolor AAN30518<249>AAN30519 Brucella suis BAC47719<86>BAC47720 Bradyrhizobium japonicum Q8UHS2<236>Q8UHS1 Agrobacterium tumefaciens Wash Q8UHS2<236>Q8UHS1 Agrobacterium tumefaciens Cereon Q8YIN4<393>Q8YIN3 Brucella melitensis Q988Z4<144>Q988Z3 Mesorhizobium loti Q92RX6<228>Q92RX5 Sinorhizobium meliloti COG1595<>COG4122 - 3 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog ** Predicted O-methyltransferase BAC17986<156>BAC17987 Corynebacterium efficiens Q8NRD3<134>Q8NRD2 Corynebacterium glutamicum Q9CCA7<280>Q9CCA6 Mycobacterium leprae Q9FBL2<421>Q9FBL1 Streptomyces coelicolor O33219<263>O06289 Mycobacterium tuberculosis CDC1551 O33219<263>O06289 Mycobacterium tuberculosis H37Rv COG1625<>COG4054 - 3 - Fe-S oxidoreductase, related to NifB/MoaA family ** Methyl coenzyme M reductase, beta subunit Y841_METJA<220>MCRY_METJA Methanococcus jannaschii Q8TXL2<173>Q49601 Methanopyrus kandleri Q8PXH4<420>Q8PXH3 Methanosarcina mazei Q8THG7<420>Q8THG6 Methanosarcina acetivorans COG1645<>COG1698 - 3 - Uncharacterized Zn-finger containing protein ** Uncharacterized protein conserved in archaea Y781_SULSO<51>YTA3_SULSO Sulfolobus solfataricus YS65_SULTO<53>Q975E7 Sulfolobus tokodaii YD85_METMA<237>Q8PX36 Methanosarcina mazei Y092_METAC<193>Q8TUH4 Methanosarcina acetivorans YF86_METKA<481>Q8TV13 Methanopyrus kandleri COG1958<>COG2016 - 3 - Small nuclear ribonucleoprotein (snRNP) homolog ** Predicted RNA-binding protein (contains PUA domain) RUXX_METTH<302>O26746 Methanothermobacter thermautotr Q8TYS3<37>Q8TYS2 Methanopyrus kandleri Q9YEQ6<117>RUXX_AERPE Aeropyrum pernix COG3480<>COG5282 - 3 - Predicted secreted protein containing a PDZ domain ** Uncharacterized conserved protein O53340<102>O53341 Mycobacterium tuberculosis CDC1551 O53340<78>O53341 Mycobacterium tuberculosis H37Rv BAC17608<68>BAC17609 Corynebacterium efficiens AAN23958<221>AAN23959 Bifidobacterium longum Q8NS97<65>Q8NS96 Corynebacterium glutamicum Q49746<63>Q9CCM7 Mycobacterium leprae NOG06592<>NOG10794 - 3 - non supervised orthologous group ** non supervised orthologous group PCXA_ANASP<88>Q8YWD9 Nostoc sp PCC 7120 PCXA_SYNEL<97>BAC08300 Synechococcus elongatus P72974<389>PCXA_SYNY3 Synechocystis sp PCC 6803 NOG08122<>NOG09654 - 3 - non supervised orthologous group ** non supervised orthologous group Q8YYK2<86>PSBN_ANASP Nostoc sp PCC 7120 PSBH_SYNY3<86>PSBN_SYNY3 Synechocystis sp PCC 6803 BAC08938<87>BAC08939 Synechococcus elongatus COG0601<>COG0747 - 3 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components ** ABC-type dipeptide transport system, periplasmic component Q8UAE0<159>Q8UAE1 Agrobacterium tumefaciens Cereon Q97VF8<98>Q97VF7 Sulfolobus solfataricus BAC53185<1894>BAC53187 Bradyrhizobium japonicum Q96XI1<103>Q96XI0 Sulfolobus tokodaii Q96XH6<92>Q96XH5 Sulfolobus tokodaii Q8UAE1<216>Q8UAE0 Agrobacterium tumefaciens Wash O28507<312>O28506 Archaeoglobus fulgidus COG0143<>COG0489 - 3 - Methionyl-tRNA synthetase ** ATPases involved in chromosome partitioning AAN66722<159>AAN66723 Pseudomonas putida SYM_YERPE<265>Q8ZG00 Yersinia pestis CO92 SYM_HAEIN<103>MRP_HAEIN Haemophilus influenzae Q8X7E8<102>SYM_ECO57 Escherichia coli EDL933 Q8ZG00<265>SYM_YERPE Yersinia pestis KIM MRP_ECOLI<93>AAN81098 Escherichia coli O6 Q9HYC8<131>SYM_PSEAE Pseudomonas aeruginosa Q8Z5C4<165>SYM_SALTI Salmonella typhi CT18 Q8ZNN5<165>SYM_SALTY Salmonella typhimurium LT2 AAN43707<93>AAN43708 Shigella flexneri AAO11351<247>AAO11352 Vibrio vulnificus AAN55647<161>AAN55648 Shewanella oneidensis Q9CNX0<182>SYM_PASMU Pasteurella multocida MRP_ECOLI<102>SYM_ECOLI Escherichia coli K12 Q8X7E8<102>SYM_ECO57 Escherichia coli O157 COG0162<>COG2377 - 3 - Tyrosyl-tRNA synthetase ** Predicted molecular chaperone distantly related to HSP70-fold metalloproteases AAN29852<116>AAN29853 Brucella suis BAC49595<165>BAC49596 Bradyrhizobium japonicum Q9A757<212>Q9A756 Caulobacter crescentus Q8UED3<149>Q8UED2 Agrobacterium tumefaciens Wash Q8UED3<254>Q8UED2 Agrobacterium tumefaciens Cereon Q8YGV9<116>Q8YGV8 Brucella melitensis Q8Y241<268>Q8Y240 Ralstonia solanacearum Q92PK6<145>Q92PK5 Sinorhizobium meliloti COG0407<>COG1806 - 3 - Uroporphyrinogen-III decarboxylase ** Uncharacterized protein conserved in bacteria DCUP_BRUMEQ8YE18 Brucella melitensis AAN30956<453>AAN30957 Brucella suis DCUP_RHILO<405>Q98DY5 Mesorhizobium loti Q9AC59DCUP_CAUCR Caulobacter crescentus Q8UJC7DCUP_AGRT5 Agrobacterium tumefaciens Wash Q8UJC7DCUP_AGRT5 Agrobacterium tumefaciens Cereon Q92TF2Q92KV8 Sinorhizobium meliloti Y001_RICCNDCUP_RICCN Rickettsia conorii Y001_RICPRDCUP_RICPR Rickettsia prowazekii COG0653<>COG0760 - 3 - Preprotein translocase subunit SecA (ATPase, RNA helicase) ** Parvulin-like peptidyl-prolyl isomerase Q8UA54<111>Q8UA55 Agrobacterium tumefaciens Cereon Q8YJG2<339>Q8YJG0 Brucella melitensis BAC45469<306>BAC45470 Bradyrhizobium japonicum Q92H92<216>PLP_RICCN Rickettsia conorii SECA_RICPR<225>PLP_RICPR Rickettsia prowazekii Q9A3Y3<325>SECA_CAUCR Caulobacter crescentus Q8UA55<207>Q8UA54 Agrobacterium tumefaciens Wash Q98G68<262>Q98G67 Mesorhizobium loti Q92MJ0<246>Q92MI9 Sinorhizobium meliloti COG0329<>COG2716 - 3 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase ** Glycine cleavage system regulatory protein DAPA_ECOL6<80>Q8XBD2 Escherichia coli EDL933 DAPA_ECOL6<62>AAN81457 Escherichia coli O6 DAPA_SALTI<80>Q8Z4R7 Salmonella typhi CT18 DAPA_SALTY<80>Q8ZN70 Salmonella typhimurium LT2 AAN44024<128>GCVR_ECOLI Shigella flexneri DAPA_YERPE<165>Q8ZCC9 Yersinia pestis CO92 DAPA_ECOLI<80>GCVR_ECOLI Escherichia coli K12 DAPA_ECOL6<80>Q8XBD2 Escherichia coli O157 Q9PER6<54>DAPA_XYLFA Xylella fastidiosa Q9I4W4<184>DAPA_PSEAE Pseudomonas aeruginosa AAN66860<260>AAN66861 Pseudomonas putida Q8P9V7<93>DAPA_XANCP Xanthomonas campestris AAO10312<381>AAO10313 Vibrio vulnificus AAN54930<172>AAN54931 Shewanella oneidensis Q8PLN6<94>DAPA_XANAC Xanthomonas axonopodis COG1162<>COG1949 - 3 - Predicted GTPases ** Oligoribonuclease (3->5 exoribonuclease) Q8XDP1<65>ORN_ECO57 Escherichia coli EDL933 Q8ZIX0<53>ORN_YERPE Yersinia pestis KIM Q8Z193<83>ORN_SALTY Salmonella typhi CT18 Q8ZKB0<83>ORN_SALTY Salmonella typhimurium LT2 Q8ZIX0<200>ORN_YERPE Yersinia pestis CO92 Q9KV18<123>ORN_VIBCH Vibrio cholerae AAO09740<39>AAO09741 Vibrio vulnificus AAN53669<113>AAN53670 Shewanella oneidensis YJEQ_HAEIN<71>ORN_HAEIN Haemophilus influenzae Q9CMD1<83>ORN_PASMU Pasteurella multocida YJEQ_ECOLI<65>ORN_ECOLI Escherichia coli K12 Q8XDP1<65>ORN_ECO57 Escherichia coli O157 ORN_PSEAE<112>Q9HUL3 Pseudomonas aeruginosa AAN70469<153>AAN70470 Pseudomonas putida COG1261<>COG1815 - 3 - Flagellar basal body P-ring biosynthesis protein ** Flagellar basal body protein FLGA_BUCAI<337>FLGB_BUCAI Buchnera aphidicola APS Q8X8M2<155>Q8X8M0 Escherichia coli EDL933 BAC24183<159>BAC24184 Wigglesworthia brevipalpis AAN79812<156>FLGB_ECOLI Escherichia coli O6 Q8XSX6<388>Q8XSX5 Ralstonia solanacearum Q8Z7K5<157>Q8Z7K4 Salmonella typhi CT18 FLGA_SALTY<157>FLGB_SALTY Salmonella typhimurium LT2 AAN42700<155>AAN42701 Shigella flexneri Q8ZI01<193>Q8ZI00 Yersinia pestis CO92 Q8ZFB9<239>Q8ZFB8 Yersinia pestis CO92 FLGA_ECOLI<155>FLGB_ECOLI Escherichia coli K12 Q8X8M2<155>Q8X8M0 Escherichia coli O157 FLGA_BUCAP<252>FLGB_BUCAP Buchnera aphidicola Schiz Q8ZFB8<173>AAM86068 Yersinia pestis KIM COG0308<>NOG05524 - 3 - Aminopeptidase N ** non supervised orthologous group BAC19129<227>BAC19130 Corynebacterium efficiens Q8NMY8<114>Q8NMY7 Corynebacterium glutamicum Q9CBY0<132>Q9CBX9 Mycobacterium leprae Q9L201<206>Q9L200 Streptomyces coelicolor O53193<102>O53194 Mycobacterium tuberculosis H37Rv COG0494<>COG0617 - 3 - NTP pyrophosphohydrolases including oxidative damage repair enzymes ** tRNA nucleotidyltransferase/poly(A) polymerase AAN24475<834>AAN24476 Bifidobacterium longum BAC19738<93>BAC19739 Corynebacterium efficiens Q8NL64<590>Q8NL63 Corynebacterium glutamicum Q9CCY1<187>Q50195 Mycobacterium leprae O05438<376>O05437 Mycobacterium tuberculosis H37Rv COG0560<>NOG07379 - 3 - Phosphoserine phosphatase ** non supervised orthologous group BAC17106<53>BAC17107 Corynebacterium efficiens Q8NTK8<390>Q8NTK7 Corynebacterium glutamicum Q9X922<663>Q9X923 Streptomyces coelicolor O69628<766>Y0G1_MYCTU Mycobacterium tuberculosis CDC1551 O69628<499>Y0G1_MYCTU Mycobacterium tuberculosis H37Rv COG0607<>COG1937 - 3 - Rhodanese-related sulfurtransferase ** Uncharacterized protein conserved in bacteria AAO03728<139>AAO03729 Staphylococcus epidermidis BAC16865<89>BAC16867 Corynebacterium efficiens Q9XB85<136>Q9XB86 Staphylococcus aureus Mu50 Q9XB85<136>Q9XB86 Staphylococcus aureus N315 Q8NU84<208>Q8NU83 Corynebacterium glutamicum Q9XBC0<137>Q932L0 Staphylococcus aureus Mu50 Q9XBC0<137>Q99XC6 Staphylococcus aureus N315 Q9RD62<100>Q9RD61 Streptomyces coelicolor Q8NYV6<137>Q8NYV5 Staphylococcus aureus MW2 COG1225<>NOG14590 - 3 - Peroxiredoxin ** non supervised orthologous group BAC19196<21>BAC19197 Corynebacterium efficiens Q8NMS7<182>Q8NMS6 Corynebacterium glutamicum Q9KZQ3<95>Q9KZQ2 Streptomyces coelicolor O53225<69>O53226 Mycobacterium tuberculosis CDC1551 O53225<69>O53226 Mycobacterium tuberculosis H37Rv COG1674<>NOG10694 - 3 - DNA segregation ATPase FtsK/SpoIIIE and related proteins ** non supervised orthologous group O86653<158>O86654 Streptomyces coelicolor Q8VJ07<222>O33354 Mycobacterium tuberculosis CDC1551 O06264<114>O33354 Mycobacterium tuberculosis H37Rv BAC17389<217>BAC17390 Corynebacterium efficiens Q8NSU1<281>Q8NSU0 Corynebacterium glutamicum COG1677<>COG1766 - 3 - Flagellar hook-basal body protein ** Flagellar biosynthesis/type III secretory pathway lipoprotein FLIE_BUCAI<264>FLIF_BUCAI Buchnera aphidicola APS FLIE_ECOLI<215>Q8XBB0 Escherichia coli EDL933 AAM86032<347>Q8ZF86 Yersinia pestis KIM AAN80812<185>AAN80813 Escherichia coli O6 Q8XSS8<236>Q8XSS7 Ralstonia solanacearum Q8Z5S1<217>Q8Z5S0 Salmonella typhi CT18 FLIE_SALTY<217>FLIF_SALTY Salmonella typhimurium LT2 FLIE_ECOLI<215>FLIF_ECOLI Escherichia coli K12 FLIE_ECOLI<215>Q8XBB0 Escherichia coli O157 FLIE_BUCAP<177>FLIF_BUCAP Buchnera aphidicola Schiz BAC24206<242>BAC24207 Wigglesworthia brevipalpis Q8ZF86<353>Q8ZF85 Yersinia pestis CO92 COG3879<>NOG08626 - 3 - Uncharacterized protein conserved in bacteria ** non supervised orthologous group AAN24416<90>AAN24417 Bifidobacterium longum Q9XA11<218>Q9XA10 Streptomyces coelicolor Y011_MYCTU<94>P71582 Mycobacterium tuberculosis CDC1551 Y011_MYCTU<94>P71582 Mycobacterium tuberculosis H37Rv COG0212<>COG1210 - 3 - 5-formyltetrahydrofolate cyclo-ligase ** UDP-glucose pyrophosphorylase Q8NS05<121>Q8NS04 Corynebacterium glutamicum Q9Z5G2<78>Q9Z5G1 Mycobacterium leprae O05575<107>O05576 Mycobacterium tuberculosis CDC1551 O05575<101>O05576 Mycobacterium tuberculosis H37Rv Q9RKA6<94>Q9RKA5 Streptomyces coelicolor COG0328<>COG0847 - 3 - Ribonuclease HI ** DNA polymerase III, epsilon subunit and related 3-5 exonucleases RNH_ECOLI<65>Q8X7Y5 Escherichia coli EDL933 BAC24214<48>BAC24215 Wigglesworthia brevipalpis RNH_SALTY<64>DP3E_SALTY Salmonella typhi CT18 RNH_SALTY<64>DP3E_SALTY Salmonella typhimurium LT2 RNH_YERPE<70>Q8ZH29 Yersinia pestis CO92 AAO10288<69>AAO10289 Vibrio vulnificus RNH_ECOLI<65>DP3E_ECOLI Escherichia coli K12 RNH_ECOLI<65>Q8X7Y5 Escherichia coli O157 RNH_BUCAP<44>DP3E_BUCAP Buchnera aphidicola Schiz Q8ZH29<70>RNH_YERPE Yersinia pestis KIM Q9KPX9<57>RNH_VIBCH Vibrio cholerae AAN55589<71>AAN55590 Shewanella oneidensis DP3E_HAEIN<61>RNH_HAEIN Haemophilus influenzae Q9CPE0<69>RNH_PASMU Pasteurella multocida COG0340<>COG4799 - 3 - Biotin-(acetyl-CoA carboxylase) ligase ** Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) P96884<50>PCC5_MYCTU Mycobacterium tuberculosis CDC1551 P96884<50>PCC5_MYCTU Mycobacterium tuberculosis H37Rv Q8NSG7<112>Q8NSG6 Corynebacterium glutamicum PCCB_MYCLE<63>Q9CCL3 Mycobacterium leprae Q9X4K7<111>Q9EWV9 Streptomyces coelicolor COG0477<>COG1629 - 3 - Permeases of the major facilitator superfamily ** Outer membrane receptor proteins, mostly Fe transport Q9A9Z7<244>Q9A9Z6 Caulobacter crescentus TSGA_YERPE<486>Q8ZJE5 Yersinia pestis KIM Q8P5I4<248>Q8P5I3 Xanthomonas campestris Q8P3F2<344>Q8P3F1 Xanthomonas campestris TSGA_YERPE<486>Q8ZJE5 Yersinia pestis CO92 Q8PGX4<249>Q8PGX3 Xanthomonas axonopodis Q8PET5<339>Q8PET4 Xanthomonas axonopodis COG0477<>COG2186 - 3 - Permeases of the major facilitator superfamily ** Transcriptional regulators Q9RJQ9<237>Q9RJQ8 Streptomyces coelicolor AAN70328<167>AAN70329 Pseudomonas putida Q9A9J4<725>Q9A9J2 Caulobacter crescentus COG0491<>COG0640 - 3 - Zn-dependent hydrolases, including glyoxylases ** Predicted transcriptional regulators Q8YQD0<120>Q8YQC9 Nostoc sp PCC 7120 Q970L3<85>Q970L2 Sulfolobus tokodaii Q8XZ61<92>Q8XZ60 Ralstonia solanacearum COG0744<>NOG07377 - 3 - Membrane carboxypeptidase (penicillin-binding protein) ** non supervised orthologous group Q8NTM8<676>Q8NTM7 Corynebacterium glutamicum Q9CB86<479>Q9CB85 Mycobacterium leprae Q9S2B9<461>CAD55325 Streptomyces coelicolor O69649<362>O69650 Mycobacterium tuberculosis CDC1551 O69649<416>O69650 Mycobacterium tuberculosis H37Rv COG1395<>COG1571 - 3 - Predicted transcriptional regulator ** Predicted DNA-binding protein containing a Zn-ribbon domain Y444_METMA<93>Q8PZP7 Methanosarcina mazei O27047<22>Y967_METTH Methanothermobacter thermautotr Q9HNG8<266>YL12_HALN1 Halobacterium sp NRC-1 COG1595<>COG1629 - 3 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog ** Outer membrane receptor proteins, mostly Fe transport Q9AAN6<177>Q9AAN5 Caulobacter crescentus Q9HUR7<165>Q9HUR6 Pseudomonas aeruginosa Q8XSQ3<289>Q8XSQ2 Ralstonia solanacearum NOG06565<>NOG07383 - 3 - non supervised orthologous group ** non supervised orthologous group Q8NSD2<95>Q8NSD1 Corynebacterium glutamicum Q9CCJ9<40>Q9CCJ8 Mycobacterium leprae Q9KZL4<394>Q9KZL3 Streptomyces coelicolor O53351<15>O53352 Mycobacterium tuberculosis CDC1551 O53351<123>O53352 Mycobacterium tuberculosis H37Rv COG0187<>COG0344 - 3 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit ** Predicted membrane protein AAN58896<113>YC11_STRMU Streptococcus mutans AAN00036<102>YC30_STRA3 Streptococcus agalactiae YA35_STAEP<204>AAO04633 Staphylococcus epidermidis Y908_STRPY<132>Q9A069 Streptococcus pyogenes M1 YKAC_LACLA<275>Q9CGW3 Lactococcus lactis YD53_STAAM<200>Q99UC4 Staphylococcus aureus Mu50 YD53_STAAM<200>Q99UC4 Staphylococcus aureus N315 Y851_STRPN<136>PARE_STRPN Streptococcus pneumoniae TIGR4 Y851_STRPN<136>AAK99560 Streptococcus pneumoniae R6 Y908_STRPY<132>Q8P1B4 Streptococcus pyogenes M18 YD53_STAAM<200>PARE_STAAW Staphylococcus aureus MW2 Y908_STRPY<51>Q8K7U7 Streptococcus pyogenes M3 COG0583<>COG2085 - 3 - Transcriptional regulator ** Predicted dinucleotide-binding enzymes Q8YK46<721>Q8YK44 Nostoc sp PCC 7120 Q8XQS3<104>Q8XQS2 Ralstonia solanacearum Q8UKE0<192>Q8UKD9 Agrobacterium tumefaciens Wash Q8UKE0<24>Q8UKD9 Agrobacterium tumefaciens Cereon Q98N90<113>Q98N89 Mesorhizobium loti COG0626<>COG1522 - 3 - Cystathionine beta-lyases/cystathionine gamma-synthases ** Transcriptional regulators Q8U9C2<124>Q8U9C1 Agrobacterium tumefaciens Wash Q93IX6<60>Q93IX5 Streptomyces coelicolor AAN70167<60>AAN70168 Pseudomonas putida Q98K64<122>Q98K63 Mesorhizobium loti Q8U9C1<124>Q8U9C2 Agrobacterium tumefaciens Cereon AAN66931<128>AAN66932 Pseudomonas putida COG1414<>COG1788 - 3 - Transcriptional regulator ** Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Q8U7A8<139>Q8U7A7 Agrobacterium tumefaciens Wash Q8YC90<37>Q8YC89 Brucella melitensis Q92TL3<131>Q92TL2 Sinorhizobium meliloti Q8NN23<38>Q8NN22 Corynebacterium glutamicum Q8U7A7<91>Q8U7A8 Agrobacterium tumefaciens Cereon AAN33827<184>AAN33828 Brucella suis Q8XX62<279>Q8XX61 Ralstonia solanacearum Q98EM3<119>Q98EM2 Mesorhizobium loti COG0021<>COG0109 - 3 - Transketolase ** Polyprenyltransferase (cytochrome oxidase assembly factor) TKT_MYCLE<200>Q9CCN4 Mycobacterium leprae BAC18503<645>BAC18504 Corynebacterium efficiens Q8NQ66<877>Q8NQ65 Corynebacterium glutamicum Q9XAC2<302>Q9XAC1 Streptomyces coelicolor COG0065<>COG1414 - 3 - 3-isopropylmalate dehydratase large subunit ** Transcriptional regulator LEU2_MYCTU<72>O53238 Mycobacterium tuberculosis H37Rv BAC18236<320>BAC18237 Corynebacterium efficiens AAN25062<318>AAN25063 Bifidobacterium longum Q8NQV8<181>LEU2_CORGL Corynebacterium glutamicum COG0477<>COG0596 - 3 - Permeases of the major facilitator superfamily ** Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) Q8PSF8<476>Q8PSF7 Methanosarcina mazei Q9A8W9<117>Q9A8W8 Caulobacter crescentus Q8TPP9<297>Q8TPP8 Methanosarcina acetivorans O53852<276>Q8VKC9 Mycobacterium tuberculosis CDC1551 COG1733<>COG2249 - 3 - Predicted transcriptional regulators ** Putative NADPH-quinone reductase (modulator of drug activity B) YDEP_BACSU<111>YDEQ_BACSU Bacillus subtilis Q8RE85<98>Q8R633 Fusobacterium nucleatum Q9K648<210>Q9K647 Bacillus halodurans Q92AM4<150>Q92AM3 Listeria innocua Q9PMC4<100>Q9PMC3 Campylobacter jejuni COG0318<>COG1024 - 3 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II ** Enoyl-CoA hydratase/carnithine racemase Q9A7B2<243>Q9A7B1 Caulobacter crescentus FD21_MYCLE<7237>ECHC_MYCLE Mycobacterium leprae Q8UFI1<145>Q8UFI0 Agrobacterium tumefaciens Wash Q8UFI1<205>Q8UFI0 Agrobacterium tumefaciens Cereon O53560<74>O53561 Mycobacterium tuberculosis CDC1551 O53560<74>O53561 Mycobacterium tuberculosis H37Rv COG1071<>COG1522 - 3 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit ** Transcriptional regulators CAD55333<296>Q9XA32 Streptomyces coelicolor Q92XD9<117>Q92XD8 Sinorhizobium meliloti Q9I1M3<310>Q9I1M2 Pseudomonas aeruginosa AAN69978<199>AAN69979 Pseudomonas putida BAC51595<443>BAC51596 Bradyrhizobium japonicum COG0313<>COG0792 - 3 - Predicted methyltransferases ** Predicted endonuclease distantly related to archaeal Holliday junction resolvase Q8ZB77<2120>Q8ZB75 Yersinia pestis KIM AAN82340<2060>AAN82342 Escherichia coli O6 YK88_NEIMB<46>Q9JXE2 Neisseria meningitidis B Q8XUC6<36>Q8XUC5 Ralstonia solanacearum Q9JWJ8<53>Y342_NEIMA Neisseria meningitidis A Q9KUE1<1862>Y582_VIBCH Vibrio cholerae COG0354<>COG2938 - 3 - Predicted aminomethyltransferase related to GcvT ** Uncharacterized conserved protein BAC24583<139>BAC24584 Wigglesworthia brevipalpis Q9I5H0<273>Q9I5G9 Pseudomonas aeruginosa AAN67045<134>AAN67046 Pseudomonas putida AAO09980<197>AAO09981 Vibrio vulnificus YGFY_ECOLI<243>Q8XD41 Escherichia coli EDL933 Q8ZHJ5<317>Q8ZHJ4 Yersinia pestis KIM YGFY_ECOLI<243>AAN81927 Escherichia coli O6 Q8XEN6<250>Q8Z3X4 Salmonella typhi CT18 Q8XEN6<250>Q8ZM80 Salmonella typhimurium LT2 AAN44368<243>UP14_ECOLI Shigella flexneri Q8ZHJ5<317>Q8ZHJ4 Yersinia pestis CO92 Q9KPA2<153>Q9KPA1 Vibrio cholerae YGFY_ECOLI<243>UP14_ECOLI Escherichia coli K12 YGFY_ECOLI<243>Q8XD41 Escherichia coli O157 COG0366<>COG2182 - 3 - Glycosidases ** Maltose-binding periplasmic proteins/domains Q9CEZ9<368>Q9CEZ8 Lactococcus lactis BAC14516<283>BAC14517 Oceanobacillus iheyhensis Q9S5Y1<251>Q9S5Y2 Thermotoga maritima Q9K8S7<322>Q9K8S6 Bacillus halodurans COG0500<>COG1309 - 3 - SAM-dependent methyltransferases ** Transcriptional regulator Q8Y6H1<185>Q8Y6H0 Listeria monocytogenes Q92AU3<201>Q92AU2 Listeria innocua Q93J83<34>Q93J82 Streptomyces coelicolor AAN51663<835>AAN51664 Leptospira interrogans COG0583<>COG0683 - 3 - Transcriptional regulator ** ABC-type branched-chain amino acid transport systems, periplasmic component Q8U8H0<214>Q8U8G9 Agrobacterium tumefaciens Wash AAN34123<265>AAN34124 Brucella suis Q92LQ9<250>Q92LQ8 Sinorhizobium meliloti Q8U8G9<214>Q8U8H0 Agrobacterium tumefaciens Cereon Q9HUQ0<620>Q9HUP9 Pseudomonas aeruginosa Q8YD33<229>Q8YD32 Brucella melitensis Q8XPP6<517>Q8XPP5 Ralstonia solanacearum COG1136<>COG1309 - 3 - ABC-type antimicrobial peptide transport system, ATPase component ** Transcriptional regulator AAN58858<113>AAN58859 Streptococcus mutans Q99ZF0<118>Q99ZE9 Streptococcus pyogenes M1 Q8P0U2<118>Q8P0U1 Streptococcus pyogenes M18 Q8K7B3<118>Q99ZE9 Streptococcus pyogenes M3 Q93D90<108>Q93D91 Streptococcus mutans Q8XME4<398>Q8XME3 Clostridium perfringens AAN24008<144>AAN24009 Bifidobacterium longum COG0402<>COG1228 - 3 - Cytosine deaminase and related metal-dependent hydrolases ** Imidazolonepropionase and related amidohydrolases Q8U8Z5<207>HUTI_AGRT5 Agrobacterium tumefaciens Cereon AAN34100<131>AAN34101 Brucella suis Q983I2<98>HUTI_RHILO Mesorhizobium loti HUTI_CAUCR<85>Q9A9L9 Caulobacter crescentus HUTI_AGRT5<114>Q8U8Z5 Agrobacterium tumefaciens Wash Q8YD09<131>Q8YD08 Brucella melitensis BAC51508<100>BAC51509 Bradyrhizobium japonicum HUTI_XANAC<4>Q8PLZ6 Xanthomonas axonopodis COG0019<>COG1965 - 3 - Diaminopimelate decarboxylase ** Protein implicated in iron transport, frataxin homolog DCDA_HAEIN<261>CYAY_HAEIN Haemophilus influenzae Q9CL23<252>CYAY_PASMU Pasteurella multocida CYAY_RALSO<315>Q8XV52 Ralstonia solanacearum CYAY_VIBCH<225>DCDA_VIBCH Vibrio cholerae AAO09600<241>AAO09601 Vibrio vulnificus COG0491<>COG0652 - 3 - Zn-dependent hydrolases, including glyoxylases ** Peptidyl-prolyl cis-trans isomerase (rotamase) Q8NQ06<464>Q8NQ05 Corynebacterium glutamicum Q9KXP1<184>Q9KXP0 Streptomyces coelicolor YP81_MYCTU<51>PPIB_MYCTU Mycobacterium tuberculosis H37Rv PPIB_MYCLE<164>YP81_MYCLE Mycobacterium leprae COG0583<>COG1062 - 3 - Transcriptional regulator ** Zn-dependent alcohol dehydrogenases, class III AAN67236<105>AAN67237 Pseudomonas putida AAO08870<153>AAO08871 Vibrio vulnificus AAN55100<232>AAN55101 Shewanella oneidensis Q9A5D4<119>Q9A5D3 Caulobacter crescentus Q9HY01<132>Q9HY00 Pseudomonas aeruginosa COG1012<>COG3284 - 3 - NAD-dependent aldehyde dehydrogenases ** Transcriptional activator of acetoin/glycerol metabolism AAN66172<93>AAN66173 Pseudomonas putida Q8XUQ8<251>Q8XUQ7 Ralstonia solanacearum AAO07791<240>AAO07792 Vibrio vulnificus Q9HX06<339>Q9HX05 Pseudomonas aeruginosa AAN57444<368>AAN57445 Shewanella oneidensis COG3346<>NOG08560 - 3 - Uncharacterized conserved protein ** non supervised orthologous group Q8P484<61>Q8P483 Xanthomonas campestris Q8PFU1<61>Q8PFU0 Xanthomonas axonopodis Q9I723<16>Q9I722 Pseudomonas aeruginosa Q8Y2G8<55>Q8Y2G7 Ralstonia solanacearum COG0050<>COG0566 - 3 - GTPases EFTU_RICCN<576>Q92GW3 Rickettsia conorii EFTU_RICPR<518>Q9ZCQ5 Rickettsia prowazekii Q9A8W1<498>EFTU_CAUCR Caulobacter crescentus Q8YHQ5<535>EFTU_BRUME Brucella melitensis COG0329<>COG1414 - 3 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase ** Transcriptional regulator Q9RDE8<115>Q9RDE7 Streptomyces coelicolor Q9PI29<231>Q9PI28 Campylobacter jejuni BAC49148<155>BAC49149 Bradyrhizobium japonicum COG1910<>COG2998 - 3 - Periplasmic molybdate-binding protein/domain ** ABC-type tungstate transport system, permease component Q8ZZY3<35>Q8ZZY2 Pyrobaculum aerophilum Q8XXM1<140>Q8XXM0 Ralstonia solanacearum BAC47570<280>BAC47571 Bradyrhizobium japonicum COG0655<>COG1733 - 3 - Multimeric flavodoxin WrbA ** Predicted transcriptional regulators Q97DJ1<265>Q97DJ0 Clostridium acetobutylicum Q97DI2<150>Q97DI1 Clostridium acetobutylicum Q8PWK0<157>Q8PWJ9 Methanosarcina mazei Q8TTU3<261>Q8TTU2 Methanosarcina acetivorans Q9KE49<292>Q9KE48 Bacillus halodurans COG0002<>COG0624 - 3 - Acetylglutamate semialdehyde dehydrogenase ** Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases ARGC_SALTI<89>Q8Z308 Salmonella typhi CT18 ARGC_YERPE<245>Q8ZA85 Yersinia pestis CO92 ARGC_VIBCH<117>Q9KNT5 Vibrio cholerae ARGE_BUCAI<161>ARGC_BUCAI Buchnera aphidicola APS Q8X742<154>ARGC_ECO57 Escherichia coli EDL933 Q8ZA85<245>ARGC_YERPE Yersinia pestis KIM AAN83344<115>ARGC_ECOL6 Escherichia coli O6 Q8ZKL9<89>ARGC_SALTY Salmonella typhimurium LT2 AAN45464<115>ARGC_SHIFL Shigella flexneri AAO09819<149>ARGC_VIBVU Vibrio vulnificus Q9CLT9<36>ARGC_PASMU Pasteurella multocida ARGE_ECOLI<154>ARGC_ECOLI Escherichia coli K12 Q8X742<154>ARGC_ECO57 Escherichia coli O157 ARGE_BUCAP<164>ARGC_BUCAP Buchnera aphidicola Schiz COG0178<>COG0477 - 3 - Excinuclease ATPase subunit ** Permeases of the major facilitator superfamily AAN66113<130>AAN66114 Pseudomonas putida Q8Y2B6<223>Q8Y2B5 Ralstonia solanacearum Q9HWG1<214>UVRA_PSEAE Pseudomonas aeruginosa AAN57003<395>AAN57004 Shewanella oneidensis COG0552<>COG0742 - 3 - Signal recognition particle GTPase ** N6-adenine-specific methylase Q8X6R2<150>Q8X6R0 Escherichia coli EDL933 AAN82693<150>YHHF_ECOLI Escherichia coli O6 Q8ZLE9<126>Q8ZLE8 Salmonella typhimurium LT2 AAN44941<150>AAN44942 Shigella flexneri AAN57546<343>AAN57547 Shewanella oneidensis FTSY_ECOLI<150>YHHF_ECOLI Escherichia coli K12 Q8X6R2<150>Q8X6R0 Escherichia coli O157 Y023_BUCAI<131>FTSY_BUCAI Buchnera aphidicola APS BAC24216<126>BAC24217 Wigglesworthia brevipalpis Q8ZAI6<282>AAM84005 Yersinia pestis KIM Q8Z252<126>Q8Z251 Salmonella typhi CT18 Q9KVJ7<204>Q9KVJ6 Vibrio cholerae AAO09625<219>AAO09626 Vibrio vulnificus YHHF_HAEIN<55>FTSY_HAEIN Haemophilus influenzae COG0463<>COG2244 - 3 - Glycosyltransferases involved in cell wall biogenesis ** Membrane protein involved in the export of O-antigen and teichoic acid Q8U8N2<4>Q8U8N3 Agrobacterium tumefaciens Cereon Q8PS63<205>Q8PS62 Methanosarcina mazei EXOW_RHIME<125>EXOT_RHIME Sinorhizobium meliloti Q9HQQ6<115>Q9HQQ5 Halobacterium sp NRC-1 Q8U8N3<118>Q8U8N2 Agrobacterium tumefaciens Wash Q98C72<1173>Q98C70 Mesorhizobium loti COG0583<>COG1073 - 3 - Transcriptional regulator ** Hydrolases of the alpha/beta superfamily Q8X6J9<264>Q8X6J7 Escherichia coli EDL933 Q8X4T4<126>Q8X8M5 Escherichia coli EDL933 AAN29017<125>AAN29018 Brucella suis Q8Y2X6<222>Q8Y2X5 Ralstonia solanacearum Q8X6J9<168>Q8X6J7 Escherichia coli O157 Q8X6H1<94>Q8X6H0 Escherichia coli EDL933 AAN78891<94>AAN78892 Escherichia coli O6 AAN80265<126>AAN80266 Escherichia coli O6 Q8YEJ4<125>Q8YEJ3 Brucella melitensis YCJY_ECOLI<126>YCJZ_ECOLI Escherichia coli K12 Q8X6H1<157>Q8X6H0 Escherichia coli O157 Q8X8M5<126>Q8X4T4 Escherichia coli O157 COG0599<>COG2207 - 3 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit ** AraC-type DNA-binding domain-containing proteins Q9JYH0<129>Q9JRB3 Neisseria meningitidis B Q9JTG8<129>Q9JRB3 Neisseria meningitidis A Q9I5X2<118>Q9I5X1 Pseudomonas aeruginosa YA52_HAEIN<112>YA53_HAEIN Haemophilus influenzae COG0640<>COG1902 - 3 - Predicted transcriptional regulators ** NADH:flavin oxidoreductases, Old Yellow Enzyme family Q8NLA4<117>Q8NLA3 Corynebacterium glutamicum CAD55454<142>Q9EX17 Streptomyces coelicolor AAN66877<50>AAN66878 Pseudomonas putida NOG04096<>NOG05497 - 3 - non supervised orthologous group ** non supervised orthologous group AAN79421<149>AAN79423 Escherichia coli O6 Q8P6J7<122>Q8P6J6 Xanthomonas campestris Q8Z358<143>Q8Z357 Salmonella typhi CT18 Q8PJ97<122>Q8PJ96 Xanthomonas axonopodis Q8XY25<142>Q8XY24 Ralstonia solanacearum Q8Z1E8<143>Q8Z1E7 Salmonella typhi CT18 Q8ZMT1<143>Q8ZMT0 Salmonella typhimurium LT2 COG0251<>COG0583 - 3 - Putative translation initiation inhibitor, yjgF family ** Transcriptional regulator Q9I5C5<221>Q9I5C4 Pseudomonas aeruginosa Q9HWK8<141>Q9HWK7 Pseudomonas aeruginosa BAC50153<21>BAC50154 Bradyrhizobium japonicum Q8P4I8<130>Q8P4I7 Xanthomonas campestris Q92XL3<126>Q92XL2 Sinorhizobium meliloti Q8PG56<125>Q8PG55 Xanthomonas axonopodis COG0526<>COG1393 - 3 - Thiol-disulfide isomerase and thioredoxins ** Arsenate reductase and related proteins, glutaredoxin family AAO04191<143>AAO04192 Staphylococcus epidermidis Q99VH5<144>Q99VH4 Staphylococcus aureus Mu50 Q99VH5<144>Q99VH4 Staphylococcus aureus N315 Q8NXH8<144>Q99VH4 Staphylococcus aureus MW2 AAN67266<86>AAN67267 Pseudomonas putida ARSC_NEIMA<124>Q9K1R4 Neisseria meningitidis B ARSC_NEIMA<124>Q9JWT2 Neisseria meningitidis A COG0477<>COG0491 - 3 - Permeases of the major facilitator superfamily ** Zn-dependent hydrolases, including glyoxylases Q8UHQ9<180>Q8UHQ8 Agrobacterium tumefaciens Wash Q8UHQ9<69>Q8UHQ8 Agrobacterium tumefaciens Cereon Q9PM87<87>Q9PM86 Campylobacter jejuni Q92RT7<253>Q92RT6 Sinorhizobium meliloti Q97VU4<207>Q97VU3 Sulfolobus solfataricus COG1296<>COG1522 - 3 - Predicted branched-chain amino acid permease (azaleucine resistance) ** Transcriptional regulators Q8YCL1<376>Q8YCL0 Brucella melitensis Q8XQB0<119>Q8XQA9 Ralstonia solanacearum Q98IF4<144>Q98IF3 Mesorhizobium loti Q8NTP9<66>Q8NTP8 Corynebacterium glutamicum AAN33955<376>AAN33956 Brucella suis COG0162<>COG0739 - 3 - Tyrosyl-tRNA synthetase ** Membrane proteins related to metalloendopeptidases Q8P475<173>Q8P474 Xanthomonas campestris Q8PFT1<171>Q8PFT0 Xanthomonas axonopodis Q9I5Q4<285>Q9I5Q3 Pseudomonas aeruginosa AAN66065<208>AAN66066 Pseudomonas putida Q9KU93<131>Q9KU92 Vibrio cholerae AAO10098<128>AAO10099 Vibrio vulnificus AAN54379<75>AAN54380 Shewanella oneidensis COG0560<>COG3726 - 3 - Phosphoserine phosphatase ** Uncharacterized membrane protein affecting hemolysin expression Q8ZIQ0<232>SMP_YERPE Yersinia pestis KIM Q9HUK5<146>Q9HUK4 Pseudomonas aeruginosa Q9KPM2<34>Q9KPM1 Vibrio cholerae Q9CKG1<80>AHPA_PASMU Pasteurella multocida Q8XB31<106>SERB_ECOLI Escherichia coli EDL933 SMP_SALTI<117>Q8XFZ5 Salmonella typhi CT18 SMP_SALTY<117>Q8XFZ5 Salmonella typhimurium LT2 SMP_ECOLI<106>SERB_ECOLI Shigella flexneri SMP_YERPE<232>Q8ZIQ0 Yersinia pestis CO92 AAO10144<107>AAO10145 Vibrio vulnificus AAN54290<185>AAN54291 Shewanella oneidensis SMP_ECOLI<106>SERB_ECOLI Escherichia coli K12 Q8XB31<106>SERB_ECOLI Escherichia coli O157 COG0784<>COG1261 - 3 - CheY-like receiver ** Flagellar basal body P-ring biosynthesis protein Q9HYP7<132>Q9HYP6 Pseudomonas aeruginosa AAN69971<153>AAN69972 Pseudomonas putida Q8P9B2<42>Q8P9B1 Xanthomonas campestris Q9KQ05<57>Q9KQ04 Vibrio cholerae AAO08765<76>AAO08766 Vibrio vulnificus AAN56250<206>AAN56251 Shewanella oneidensis Q8PL19<77>Q8PL18 Xanthomonas axonopodis COG3027<>COG3079 - 3 - Uncharacterized protein conserved in bacteria ** Uncharacterized protein conserved in bacteria AAO09974<247>AAO09975 Vibrio vulnificus AAN53851<322>AAN53852 Shewanella oneidensis Q9CKA3<144>YH23_PASMU Pasteurella multocida YGFB_ECOLI<162>YGFE_ECOLI Escherichia coli EDL933 Y911_YERPE<289>AAM86849 Yersinia pestis KIM YGFB_ECOLI<162>YGFE_ECOLI Escherichia coli O6 AAN70766<361>AAN70767 Pseudomonas putida YW15_SALTI<161>Q8XGR5 Salmonella typhi CT18 YGFB_SALTY<161>Q8XGR5 Salmonella typhimurium LT2 AAN44379<162>AAN44380 Shigella flexneri Y911_YERPE<337>Q8ZHI1 Yersinia pestis CO92 YGFB_ECOLI<162>YGFE_ECOLI Escherichia coli K12 YGFB_ECOLI<162>YGFE_ECOLI Escherichia coli O157 COG0515<>COG0859 - 3 - Serine/threonine protein kinase ** ADP-heptose:LPS heptosyltransferase AAN57636<89>AAN57637 Shewanella oneidensis KDKA_HAEIN<77>Y261_HAEIN Haemophilus influenzae Q8PBX4<21>KDKA_XANCP Xanthomonas campestris Q9KVC1<80>KDKA_VIBCH Vibrio cholerae Q9CLD6<92>KDKA_PASMU Pasteurella multocida Q8PNH4<21>KDKA_XANAC Xanthomonas axonopodis COG0753<>COG1595 - 3 - Catalase ** DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog AAN68495<125>AAN68496 Pseudomonas putida BAC17033<211>BAC17034 Corynebacterium efficiens Q8NTQ2<246>Q8NTQ1 Corynebacterium glutamicum Q8PFJ2<161>Q8PFJ1 Xanthomonas axonopodis COG0784<>COG3920 - 3 - CheY-like receiver ** Signal transduction histidine kinase BAC47444<322>BAC47445 Bradyrhizobium japonicum AAN49739<483>AAN49740 Leptospira interrogans Q8P4M1<178>Q8P4M0 Xanthomonas campestris Q8PG87<834>Q8PG86 Xanthomonas axonopodis COG1020<>COG1021 - 3 - Non-ribosomal peptide synthetase modules and related proteins ** Peptide arylation enzymes Q8YDU8<1210>Q8YDU6 Brucella melitensis P71717<99>P71716 Mycobacterium tuberculosis CDC1551 P71717<99>P71716 Mycobacterium tuberculosis H37Rv Q9EWP6<161>Q9EWP5 Streptomyces coelicolor COG1522<>COG3186 - 3 - Transcriptional regulators ** Phenylalanine-4-hydroxylase Q8XU40<140>PH4H_RALSO Ralstonia solanacearum Q98D73<145>PH4H_RHILO Mesorhizobium loti Q8PE27<128>Q8PE26 Xanthomonas campestris Q8PQZ5<128>Q8PQZ4 Xanthomonas axonopodis COG0477<>COG0652 - 3 - Permeases of the major facilitator superfamily ** Peptidyl-prolyl cis-trans isomerase (rotamase) TSGA_SALTI<277>Q8Z1Z7 Salmonella typhi CT18 PPIA_ECOLI<271>TSGA_ECO57 Escherichia coli EDL933 Q9A9K1<149>Q9A9K0 Caulobacter crescentus Q8Y4Q8<232>Q8Y4Q7 Listeria monocytogenes Q928Q7<232>Q928Q6 Listeria innocua PPIA_ECOLI<271>TSGA_ECOLI Escherichia coli O6 PPIA_SALTY<277>TSGA_SALTY Salmonella typhimurium LT2 AAN44845<271>TSGA_SHIFL Shigella flexneri PPIA_ECOLI<271>TSGA_ECOLI Escherichia coli K12 PPIA_ECOLI<271>TSGA_ECO57 Escherichia coli O157 COG1300<>COG1714 - 3 - Uncharacterized membrane protein ** Predicted membrane protein/domain Q9KZM4<127>Q9KZM3 Streptomyces coelicolor Q8VIV4<20>O69663 Mycobacterium tuberculosis CDC1551 O69662<92>O69663 Mycobacterium tuberculosis H37Rv Q9KEW6<96>Q9KEW5 Bacillus halodurans COG0583<>COG0684 - 3 - Transcriptional regulator ** Demethylmenaquinone methyltransferase AAM83648<811>Q8ZJL2 Yersinia pestis KIM Q8P3P0<144>Q8P3N9 Xanthomonas campestris Q8PF32<102>Q8PF31 Xanthomonas axonopodis Q8XQJ1<66>Q8XQJ0 Ralstonia solanacearum COG0583<>COG1280 - 3 - Transcriptional regulator ** Putative threonine efflux protein Q8X5A8<58>Q8XA19 Escherichia coli EDL933 AAN81550<58>AAN81551 Escherichia coli O6 AAN66323<228>AAN66324 Pseudomonas putida Q98I96<66>Q98I95 Mesorhizobium loti Q8ZMX6<103>Q8ZMX5 Salmonella typhimurium LT2 AAN44135<58>AAN44136 Shigella flexneri AAN53610<100>AAN53611 Shewanella oneidensis YFIE_ECOLI<58>YFIK_ECOLI Escherichia coli K12 Q8X5A8<58>Q8XA19 Escherichia coli O157 Q9HZR8<66>Q9HZR7 Pseudomonas aeruginosa COG0491<>COG0583 - 3 - Zn-dependent hydrolases, including glyoxylases ** Transcriptional regulator Q8Z2H7<74>Q8Z2H6 Salmonella typhi CT18 AAO08367<113>AAO08368 Vibrio vulnificus Q8UKL7<94>Q8UKL6 Agrobacterium tumefaciens Wash Q8UJD1<72>Q8UJD0 Agrobacterium tumefaciens Wash Q8UJD1<51>Q8UJD0 Agrobacterium tumefaciens Cereon Q9I776<108>Q9I775 Pseudomonas aeruginosa BAC48342<43>BAC48343 Bradyrhizobium japonicum Q930M9<61>Q930M8 Sinorhizobium meliloti Q8ZL45<74>Q8ZL44 Salmonella typhimurium LT2 Q8ZHT5<107>Q8ZHT4 Yersinia pestis CO92 Q9KRS5<64>Q9KRS4 Vibrio cholerae AAN56466<199>AAN56467 Shewanella oneidensis COG1121<>COG4531 - 3 - ABC-type Mn/Zn transport systems, ATPase component ** ABC-type Zn2+ transport system, periplasmic component/surface adhesin Q8UF79<105>Q8UF78 Agrobacterium tumefaciens Wash Q8UF79<96>Q8UF78 Agrobacterium tumefaciens Cereon Q8YDJ8<245>Q8YDJ7 Brucella melitensis Q92P76<178>Q92P75 Sinorhizobium meliloti Q8ZEU3<73>ZNUA_YERPE Yersinia pestis CO92 ZNUC_BUCAP<64>ZNUA_BUCAP Buchnera aphidicola Schiz Q8XCJ1<25>ZNUC_ECOLI Escherichia coli EDL933 AAM85809<73>Q8ZEU3 Yersinia pestis KIM AAN34282<227>AAN34283 Brucella suis Q8Z5W7<64>Q8Z5W6 Salmonella typhi CT18 Q9KQB9<75>Q9KQB8 Vibrio cholerae AAO08689<82>AAO08690 Vibrio vulnificus ZNUA_ECOLI<25>ZNUC_ECOLI Escherichia coli K12 Q8XCJ1<25>ZNUC_ECOLI Escherichia coli O157 COG0697<>COG1846 - 3 - Permeases of the drug/metabolite transporter (DMT) superfamily ** Transcriptional regulators Q9L1Y9<113>Q9L1Y8 Streptomyces coelicolor Q98G83<109>Q98G82 Mesorhizobium loti Q8UIM1<97>Q8UIM0 Agrobacterium tumefaciens Wash Q8UIM1<76>Q8UIM0 Agrobacterium tumefaciens Cereon Q92SR5<114>Q92SR4 Sinorhizobium meliloti AAO07285<108>AAO07286 Vibrio vulnificus COG0300<>COG0789 - 3 - Short-chain dehydrogenases of various substrate specificities ** Predicted transcriptional regulators Q97TU5Q97TD4 Clostridium acetobutylicum Q8XWZ7<100>Q8XWZ6 Ralstonia solanacearum AAN59707<79>AAN59708 Streptococcus mutans COG0438<>COG0451 - 3 - Glycosyltransferase ** Nucleoside-diphosphate-sugar epimerases Q8YMU7<483>Q8YMU6 Nostoc sp PCC 7120 BAC47646<350>BAC47647 Bradyrhizobium japonicum Q9HTB6<408>Q9HTB5 Pseudomonas aeruginosa COG0477<>COG1733 - 3 - Permeases of the major facilitator superfamily ** Predicted transcriptional regulators Q92Y15<0>Q92Y14 Sinorhizobium meliloti Q9RD98<104>Q9RD97 Streptomyces coelicolor AAN66130<103>AAN66131 Pseudomonas putida COG0583<>COG0715 - 3 - Transcriptional regulator ** ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Q55459<253>Q55460 Synechocystis sp PCC 6803 AAN68834<202>AAN68835 Pseudomonas putida BAC47899<210>BAC47900 Bradyrhizobium japonicum COG1024<>COG1846 - 3 - Enoyl-CoA hydratase/carnithine racemase ** Transcriptional regulators AAN68962<198>AAN68963 Pseudomonas putida Q8XT91<153>Q8XT90 Ralstonia solanacearum Q98JP9<167>Q98JP8 Mesorhizobium loti COG1522<>COG2423 - 3 - Transcriptional regulators ** Predicted ornithine cyclodeaminase, mu-crystallin homolog AAN69133<188>AAN69134 Pseudomonas putida Q8XSJ2<139>Q8XSJ1 Ralstonia solanacearum Q92U21<127>Q92U20 Sinorhizobium meliloti COG1595<>NOG09828 - 3 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog ** non supervised orthologous group Q9A3F1<18>Q9A3F0 Caulobacter crescentus AAN66618<272>AAN66619 Pseudomonas putida Q92W36<235>Q92W35 Sinorhizobium meliloti COG0019<>COG0583 - 3 - Diaminopimelate decarboxylase ** Transcriptional regulator Q8X6J3<122>Q8X6J2 Escherichia coli EDL933 Q8UB21<273>Q8UB20 Agrobacterium tumefaciens Wash Q8ZHT8<170>AAM86735 Yersinia pestis KIM AAN81880<122>AAN81881 Escherichia coli O6 AAN67691<124>AAN67692 Pseudomonas putida Q92LY7<587>Q92LY6 Sinorhizobium meliloti Q8Z403<118>Q8XGD5 Salmonella typhi CT18 Q8ZMA2<118>Q8XGD5 Salmonella typhimurium LT2 AAN44334<122>AAN44335 Shigella flexneri Q8ZHT8<215>Q8ZHT7 Yersinia pestis CO92 AAO07938<439>AAO07939 Vibrio vulnificus DCDA_ECOLI<122>LYSR_ECOLI Escherichia coli K12 Q8X6J3<122>Q8X6J2 Escherichia coli O157 COG0346<>COG1028 - 3 - Lactoylglutathione lyase and related lyases ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) BAC12990<192>BAC12991 Oceanobacillus iheyhensis Q9X7T4<233>Q9X7T3 Streptomyces coelicolor Q8TUG0<256>Q8TUF9 Methanosarcina acetivorans COG1846<>COG3961 - 3 - Transcriptional regulators ** Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes AAO05851<172>AAO05852 Staphylococcus epidermidis Q97TS3<185>Q97TS2 Clostridium acetobutylicum Q9CG07<135>Q9CG06 Lactococcus lactis COG0625<>COG2378 - 3 - Glutathione S-transferase ** Predicted transcriptional regulator Q9I3P6<109>Q9I3P5 Pseudomonas aeruginosa BAC53124<88>BAC53125 Bradyrhizobium japonicum Q8UK52<95>Q8UK51 Agrobacterium tumefaciens Wash Q8UK52<95>Q8UK51 Agrobacterium tumefaciens Cereon Q8P8B7<85>Q8P8B6 Xanthomonas campestris Q8PJS1<105>Q8PJS0 Xanthomonas axonopodis COG0188<>COG2227 - 3 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit ** 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Q8XE30<147>UBIG_ECO57 Escherichia coli EDL933 Q8ZGR5<262>UBIG_YERPE Yersinia pestis KIM AAN81227<147>AAN81228 Escherichia coli O6 GYRA_ECOLI<147>AAN43828 Shigella flexneri AAO11363<290>AAO11364 Vibrio vulnificus GYRA_ECOLI<147>UBIG_ECOLI Escherichia coli K12 Q8XE30<147>UBIG_ECO57 Escherichia coli O157 BAC24590<183>BAC24591 Wigglesworthia brevipalpis UBIG_YERPE<262>Q8ZGR5 Yersinia pestis CO92 UBIG_VIBCH<352>Q9KSJ8 Vibrio cholerae UBIG_PASMU<135>Q9CMI5 Pasteurella multocida COG0477<>COG4533 - 3 - Permeases of the major facilitator superfamily ** ABC-type uncharacterized transport system, periplasmic component O07569<114>O07570 Bacillus subtilis Q8Y5L5<116>Q8Y5L4 Listeria monocytogenes Q929X4<115>Q929X3 Listeria innocua AAM87197<664>AAM87198 Yersinia pestis KIM Q9RZS2<13>Q9RZS1 Deinococcus radiodurans AAN41729<301>AAN41730 Shigella flexneri YABN_ECOLI<322>SETA_ECOLI Escherichia coli K12 COG0725<>COG2005 - 3 - ABC-type molybdate transport system, periplasmic component ** N-terminal domain of molybdenum-binding protein MODA_HAEIN<138>MODE_HAEIN Haemophilus influenzae Q9ABA4<6>Q9ABA3 Caulobacter crescentus AAN56838<224>AAN56839 Shewanella oneidensis COG0739<>COG1121 - 3 - Membrane proteins related to metalloendopeptidases ** ABC-type Mn/Zn transport systems, ATPase component YEBA_ECOLI<1027>ZNUC_ECOLI Escherichia coli O6 Q8ZNV9<988>Q8ZNV7 Salmonella typhimurium LT2 YEBA_ECOLI<1027>AAN43425 Shigella flexneri BAC24262<174>BAC24263 Wigglesworthia brevipalpis ZNUC_HAEIN<172>Y409_HAEIN Haemophilus influenzae Q9CP24<193>Q9CP23 Pasteurella multocida COG2932<>COG3423 - 3 - Predicted transcriptional regulator ** Predicted transcriptional regulator AAN55680<153>AAN55681 Shewanella oneidensis YE76_HAEIN<228>NER_HAEIN Haemophilus influenzae Q9CNL1<237>Q9CNL0 Pasteurella multocida Q9JQV8<217>Q9JTC1 Neisseria meningitidis A COG0625<>COG1309 - 3 - Glutathione S-transferase ** Transcriptional regulator AAN68086<391>AAN68087 Pseudomonas putida BAC53248<84>BAC53249 Bradyrhizobium japonicum Q9KM04<102>Q9KM03 Vibrio cholerae AAO07401<101>AAO07402 Vibrio vulnificus AAN54634<156>AAN54635 Shewanella oneidensis Q9HZH4<166>Q9HZH3 Pseudomonas aeruginosa BAC52439<108>BAC52440 Bradyrhizobium japonicum COG0583<>COG0665 - 3 - Transcriptional regulator ** Glycine/D-amino acid oxidases (deaminating) Q8U8Y7<186>Q8U8Y6 Agrobacterium tumefaciens Wash Q8UCD9<131>Q8UCD8 Agrobacterium tumefaciens Wash Q8UCD9<131>Q8UCD8 Agrobacterium tumefaciens Cereon AAO08936<110>AAO08937 Vibrio vulnificus Q8U8Y6<186>Q8U8Y7 Agrobacterium tumefaciens Cereon DAD2_PSEAE<65>Q9HU98 Pseudomonas aeruginosa Q987J9<114>Q987J8 Mesorhizobium loti Q92ND3<123>Q92ND2 Sinorhizobium meliloti DADA_VIBCH<101>Q9KTV0 Vibrio cholerae COG0050<>COG1072 - 3 - GTPases EFT2_PASMU<718>COAA_PASMU Pasteurella multocida BAC24660<743>BAC24661 Wigglesworthia brevipalpis AAN45481<762>AAN45482 Shigella flexneri COAA_VIBCH<512>EFT1_VIBCH Vibrio cholerae COAA_HAEIN<705>EFTU_HAEIN Haemophilus influenzae COG0156<>COG0161 - 3 - 7-keto-8-aminopelargonate synthetase and related enzymes ** Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Q9PIJ3<68>Q9PIJ2 Campylobacter jejuni BAC24598<1119>BAC24600 Wigglesworthia brevipalpis AAN79326<1013>AAN79329 Escherichia coli O6 AAN42359<1013>AAN42361 Shigella flexneri COG0174<>COG2071 - 3 - Glutamine synthetase ** Predicted glutamine amidotransferases Q9I6J5<279>Q9I6J4 Pseudomonas aeruginosa AAN42913<254>AAN42914 Shigella flexneri YCJK_ECOLI<122>YCJL_ECOLI Escherichia coli K12 Q8X7G0<122>Q8X7G2 Escherichia coli O157 Q8X7G2<122>Q8X7G0 Escherichia coli EDL933 Q8P896<130>Q8P895 Xanthomonas campestris Q8PJQ1<144>Q8PJQ0 Xanthomonas axonopodis COG0583<>COG1917 - 3 - Transcriptional regulator ** Uncharacterized conserved protein, contains double-stranded beta-helix domain Q9KYQ0<48>Q9KYP9 Streptomyces coelicolor Q8P7D4<203>Q8P7D3 Xanthomonas campestris BAC49863<68>BAC49864 Bradyrhizobium japonicum COG0446<>COG1309 - 3 - Uncharacterized NAD(FAD)-dependent dehydrogenases ** Transcriptional regulator AAN70323<124>AAN70324 Pseudomonas putida STCD_RHIME<142>Q92US8 Sinorhizobium meliloti Q8UCF0<158>Q8UCE9 Agrobacterium tumefaciens Wash O07254<114>O07255 Mycobacterium tuberculosis CDC1551 O07254<114>O07255 Mycobacterium tuberculosis H37Rv COG0583<>COG1629 - 3 - Transcriptional regulator ** Outer membrane receptor proteins, mostly Fe transport Q8U8R9<170>Q8U8R8 Agrobacterium tumefaciens Wash Q9I6U3<350>Q9I6U2 Pseudomonas aeruginosa Q9I1E4<150>Q9I1E3 Pseudomonas aeruginosa Q9KM14<218>Q9KM13 Vibrio cholerae Q8U8R8<170>Q8U8R9 Agrobacterium tumefaciens Cereon AAO07241<477>AAO07242 Vibrio vulnificus COG1012<>COG2207 - 3 - NAD-dependent aldehyde dehydrogenases ** AraC-type DNA-binding domain-containing proteins Q8U711<124>Q8U712 Agrobacterium tumefaciens Cereon Q9I5I2<93>Q9I5I1 Pseudomonas aeruginosa MMSA_PSEAE<132>MMSR_PSEAE Pseudomonas aeruginosa Q8U712<124>Q8U711 Agrobacterium tumefaciens Wash AAO10531<162>AAO10532 Vibrio vulnificus FEAR_ECOLI<233>FEAB_ECOLI Escherichia coli K12 COG1309<>COG1902 - 3 - Transcriptional regulator ** NADH:flavin oxidoreductases, Old Yellow Enzyme family Q8UCF0<158>Q8UCE9 Agrobacterium tumefaciens Wash Q9HZR6<126>Q9HZR5 Pseudomonas aeruginosa AAN70323<124>AAN70324 Pseudomonas putida STCD_RHIME<142>Q92US8 Sinorhizobium meliloti Q9KKV2<150>Q9KKV1 Vibrio cholerae AAN56390<130>AAN56391 Shewanella oneidensis COG0642<>COG1846 - 3 - Signal transduction histidine kinase ** Transcriptional regulators O31671<193>O31672 Bacillus subtilis Q8RAL2<361>Q8RAL1 Thermoanaerobacter tengcongensis Q8PLX1<1299>Q8PLX0 Xanthomonas axonopodis COG0329<>COG1225 - 3 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase ** Peroxiredoxin DAPA_PASMU<175>Q9CLZ6 Pasteurella multocida DAPA_BUCAP<339>BCP_BUCAP Buchnera aphidicola Schiz AAM84989<716>DAPA_YERPE Yersinia pestis KIM BCP_HAEIN<101>DAPA_HAEIN Haemophilus influenzae COG0438<>COG0463 - 3 - Glycosyltransferase ** Glycosyltransferases involved in cell wall biogenesis AAN33315<172>AAN33317 Brucella suis Q9UX69<20>Q9UX70 Sulfolobus solfataricus Q8YAX3<136>Q8YAX2 Brucella melitensis Q989B3<130>Q989B2 Mesorhizobium loti Q92VP6<281>Q92VP5 Sinorhizobium meliloti O58170<186>O58171 Pyrococcus horikoshii COG0402<>COG2188 - 3 - Cytosine deaminase and related metal-dependent hydrolases ** Transcriptional regulators AAM85897<94>Q9ZC75 Yersinia pestis KIM Q9HU78<101>Q9HU77 Pseudomonas aeruginosa AAN70600<109>AAN70601 Pseudomonas putida Q92MC8<129>Q92MC7 Sinorhizobium meliloti Q9ZC75<148>Q9ZC76 Yersinia pestis CO92 COG0160<>COG1167 - 3 - 4-aminobutyrate aminotransferase and related aminotransferases ** Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Q8Y3F1<118>Q8Y3F0 Ralstonia solanacearum Q8ZCW4<182>Q8ZCW3 Yersinia pestis CO92 P94426<107>GABT_BACSU Bacillus subtilis Q8ZCW3<157>AAM84962 Yersinia pestis KIM COG1486<>COG2207 - 3 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases ** AraC-type DNA-binding domain-containing proteins Q8U6Z6<90>Q8U6Z7 Agrobacterium tumefaciens Cereon AGAL_RHIME<196>Q9KIF4 Sinorhizobium meliloti AAN45529<283>AAN45530 Shigella flexneri Q9KAQ9<163>Q9KAQ8 Bacillus halodurans Q8XDU2<283>Q8XDU1 Escherichia coli EDL933 Q8U6Z7<198>Q8U6Z6 Agrobacterium tumefaciens Wash MELR_ECOLI<283>AAN83548 Escherichia coli O6 Q989F9<67>Q989F8 Mesorhizobium loti Q8XH24<272>Q8Z1P0 Salmonella typhi CT18 Q8XH24<269>AGAL_SALTY Salmonella typhimurium LT2 MELR_ECOLI<283>AGAL_ECOLI Escherichia coli K12 Q8XDU2<283>Q8XDU1 Escherichia coli O157 COG0583<>COG0693 - 3 - Transcriptional regulator ** Putative intracellular protease/amidase Q97DX1<116>Q97DX0 Clostridium acetobutylicum Q8U811<78>Q8U812 Agrobacterium tumefaciens Cereon Q9EXU5<188>Q92WX2 Sinorhizobium meliloti Q8U812<189>Q8U811 Agrobacterium tumefaciens Wash Q8PED9<135>Q8PED8 Xanthomonas campestris COG1392<>COG3025 - 3 - Phosphate transport regulator (distant homolog of PhoU) ** Uncharacterized conserved protein Q9HTY2<114>Q9HTY1 Pseudomonas aeruginosa Q9CP18<176>Q9CP17 Pasteurella multocida Q9KPD2<200>Q9KPD1 Vibrio cholerae AAO09131<200>AAO09132 Vibrio vulnificus AAN56750<232>AAN56751 Shewanella oneidensis COG0583<>COG3119 - 3 - Transcriptional regulator ** Arylsulfatase A and related enzymes AAO07123<135>AAO07124 Vibrio vulnificus Q8U708<1063>Q8U710 Agrobacterium tumefaciens Cereon Q9I799<113>Q9I798 Pseudomonas aeruginosa AAN65711<109>AAN65713 Pseudomonas putida COG0607<>COG4977 - 3 - Rhodanese-related sulfurtransferase ** Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Q9A340<61>Q9A339 Caulobacter crescentus Q8XB25<83>Q8X475 Escherichia coli EDL933 Q98FC1<49>Q98FC0 Mesorhizobium loti COG0583<>COG0778 - 3 - Transcriptional regulator ** Nitroreductase Q8YA65<119>Q8YA64 Listeria monocytogenes Q92EY6<119>Q92EY5 Listeria innocua AAN68043<104>AAN68044 Pseudomonas putida Q97DW1<257>Q97DW0 Clostridium acetobutylicum COG0531<>COG1522 - 3 - Amino acid transporters ** Transcriptional regulators O31497<144>O34560 Bacillus subtilis Q9AB10<1455>Q9AB08 Caulobacter crescentus AAO07701<256>AAO07702 Vibrio vulnificus COG1028<>COG1733 - 3 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Predicted transcriptional regulators BAC50373<50>BAC50374 Bradyrhizobium japonicum YKVN_BACSU<169>O31680 Bacillus subtilis Q8UJN9<67>Q8UJN8 Agrobacterium tumefaciens Wash Q8UJN9<67>Q8UJN8 Agrobacterium tumefaciens Cereon Q8TTL6<696>Q8TTL5 Methanosarcina acetivorans BAC47869<78>BAC47870 Bradyrhizobium japonicum COG1129<>COG2390 - 3 - ABC-type sugar transport system, ATPase component ** Transcriptional regulator, contains sigma factor-related N-terminal domain Q8XAY7<249>Q8XAY6 Escherichia coli EDL933 Q92VV5<226>Q92VV4 Sinorhizobium meliloti Q8Z2X5<256>Q8Z2X4 Salmonella typhi CT18 Q8ZKQ5<256>Q8ZKQ4 Salmonella typhimurium LT2 AAN43169<249>AAN43170 Shigella flexneri Q9CLG2<253>Q9CLG1 Pasteurella multocida YDEW_ECOLI<249>EGO_ECOLI Escherichia coli K12 Q8XAY6<249>Q8XAY7 Escherichia coli O157 COG1028<>COG1414 - 3 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Transcriptional regulator Q8UHH7<101>Q8UHH6 Agrobacterium tumefaciens Wash Q8U7I3<135>Q8U7I4 Agrobacterium tumefaciens Cereon Q8UHH7<44>Q8UHH6 Agrobacterium tumefaciens Cereon BAC14167<165>BAC14168 Oceanobacillus iheyhensis Q92RN6<126>Q92RN5 Sinorhizobium meliloti AAO07831<253>AAO07832 Vibrio vulnificus Q8U7I4<198>Q8U7I3 Agrobacterium tumefaciens Wash COG0583<>COG1566 - 3 - Transcriptional regulator ** Multidrug resistance efflux pump Q9HZ90<70>Q9HZ89 Pseudomonas aeruginosa BAC52857<276>BAC52858 Bradyrhizobium japonicum AAO07905<100>AAO07906 Vibrio vulnificus AAN53604<245>AAN53605 Shewanella oneidensis AAN44745<394>AAN44746 Shigella flexneri COG0446<>COG0583 - 3 - Uncharacterized NAD(FAD)-dependent dehydrogenases ** Transcriptional regulator Q92YV5<1573>Q92YV3 Sinorhizobium meliloti Q8XMF6<350>Q8XMF5 Clostridium perfringens Q92EG9<198>Q92EG8 Listeria innocua COG0583<>COG2120 - 3 - Transcriptional regulator ** Uncharacterized proteins, LmbE homologs Q92PJ0<113>Q92PI9 Sinorhizobium meliloti AAN68127<118>AAN68128 Pseudomonas putida Q8ZJL1<131>Q8ZJL0 Yersinia pestis CO92 COG1132<>COG2207 - 3 - ABC-type multidrug transport system, ATPase and permease components ** AraC-type DNA-binding domain-containing proteins Q8YAL0<143>Q8YAK9 Listeria monocytogenes Q92FF0<143>Q92FE9 Listeria innocua Q9ZG01<167>Q56951 Yersinia pestis KIM AAN80881<167>AAN80882 Escherichia coli O6 Q97Q01<154>Q97Q00 Streptococcus pneumoniae TIGR4 Q56951<167>Q9R7V3 Yersinia pestis CO92 COG0500<>COG0583 - 3 - SAM-dependent methyltransferases ** Transcriptional regulator O31474<193>P94387 Bacillus subtilis BAC13452<127>BAC13453 Oceanobacillus iheyhensis Q9KLB4<142>Q9KLB3 Vibrio cholerae Q987S4<255>Q987S3 Mesorhizobium loti COG0534<>COG2207 - 3 - Na+-driven multidrug efflux pump ** AraC-type DNA-binding domain-containing proteins O07940<124>YISR_BACSU Bacillus subtilis Q98D15<250>Q98D14 Mesorhizobium loti AAO07311<52>AAO07312 Vibrio vulnificus COG3466<>NOG14007 - 2 - Putative transposon-encoded protein ** non supervised orthologous group O34668<67>T121_ARCFU Archaeoglobus fulgidus O34668<67>T121_ARCFU Archaeoglobus fulgidus O34590<52>T121_ARCFU Archaeoglobus fulgidus O34668<67>T121_ARCFU Archaeoglobus fulgidus O34590<52>T121_ARCFU Archaeoglobus fulgidus Q97CF9<209>Q97CF8 Thermoplasma volcanium O28061<52>O28060 Archaeoglobus fulgidus COG0596<>COG1846 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Transcriptional regulators Q8U6E4<128>Q8U6E3 Agrobacterium tumefaciens Wash Q9RCX1<10>Q9RCX0 Streptomyces coelicolor Q9X956<112>Q9X957 Streptomyces coelicolor Q98ML0<213>Q98MK9 Mesorhizobium loti Q98HW0<164>Q98HV9 Mesorhizobium loti Q92K89<45>Q92PB5 Sinorhizobium meliloti Q92MX7<217>Q92MX6 Sinorhizobium meliloti Q8UKN6<133>Q8UKN5 Agrobacterium tumefaciens Wash Q8UKB2<253>Q8UKB1 Agrobacterium tumefaciens Wash Q8U6E3<128>Q8U6E4 Agrobacterium tumefaciens Cereon Q8UKN6<28>Q8UKN5 Agrobacterium tumefaciens Cereon Q8UKB2<76>Q8UKB1 Agrobacterium tumefaciens Cereon Q9KXI9<60>Q9KXI8 Streptomyces coelicolor Q92XY2<205>Q92XY1 Sinorhizobium meliloti COG1028<>COG1396 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Predicted transcriptional regulators Q9RD20<102>Q9RD19 Streptomyces coelicolor Q9RI67<187>Q9RI66 Streptomyces coelicolor Q9S1Q8<289>Q9S1Q7 Streptomyces coelicolor Q9L0G2<45>Q9L0G1 Streptomyces coelicolor Q98K51<105>Q98K50 Mesorhizobium loti COG0667<>COG1309 - 2 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) ** Transcriptional regulator Q9RL57<24>Q9RL56 Streptomyces coelicolor Q9ADK9<145>Q9ADK8 Streptomyces coelicolor Q98JG7<116>Q98JG6 Mesorhizobium loti Q9EWE9<121>Q9EWV3 Streptomyces coelicolor COG0115<>COG0583 - 2 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ** Transcriptional regulator ILVE_HAEIN<462>GCVA_HAEIN Haemophilus influenzae Q9CN73<472>Q9CN72 Pasteurella multocida Q8XFS3<192>Q8XGX6 Ralstonia solanacearum Q8XFS3<192>Q8XGX6 Ralstonia solanacearum COG0183<>COG1733 - 2 - Acetyl-CoA acetyltransferase ** Predicted transcriptional regulators Q9A9R8<236>Q9A9R7 Caulobacter crescentus Q9A3U1<111>Q9A3U0 Caulobacter crescentus Q9K409<135>Q9K408 Streptomyces coelicolor COG0559<>COG0683 - 2 - Branched-chain amino acid ABC-type transport system, permease components ** ABC-type branched-chain amino acid transport systems, periplasmic component Q8ZTA3<111>Q8ZTA2 Pyrobaculum aerophilum Q8ZVX0<60>Q8ZVW9 Pyrobaculum aerophilum O28880<51>O28879 Archaeoglobus fulgidus COG1131<>COG4585 - 2 - ABC-type multidrug transport system, ATPase component ** Signal transduction histidine kinase AAN24714<293>AAN24715 Bifidobacterium longum Q9K3I2<108>Q9K3I1 Streptomyces coelicolor Q9S6T6<137>Q53893 Streptomyces coelicolor COG1175<>COG1609 - 2 - ABC-type sugar transport systems, permease components ** Transcriptional regulators AAN24975<217>AAN24976 Bifidobacterium longum Q9L149<193>Q9L148 Streptomyces coelicolor AAN24001<281>AAN24002 Bifidobacterium longum COG0364<>COG1737 - 2 - Glucose-6-phosphate 1-dehydrogenase ** Transcriptional regulators Q8XCJ6<338>Q8XCJ5 Escherichia coli EDL933 AAM85804<92>AAM85805 Yersinia pestis KIM G6PD_PSEAE<187>HEXR_PSEAE Pseudomonas aeruginosa Q8Z5X1<342>Q8Z5X0 Salmonella typhi CT18 Q8ZNW2<342>Q8ZNW1 Salmonella typhimurium LT2 AAN55520<311>AAN55521 Shewanella oneidensis G6PD_ECOLI<338>HEXR_ECOLI Escherichia coli K12 Q8XCJ6<338>Q8XCJ5 Escherichia coli O157 Q9HTC8<86>Q9HTC7 Pseudomonas aeruginosa AAN66646<212>AAN66647 Pseudomonas putida AAN70915<89>AAN70916 Pseudomonas putida Q8ZET8<353>Q8ZET7 Yersinia pestis CO92 COG0394<>COG0640 - 2 - Protein-tyrosine-phosphatase ** Predicted transcriptional regulators Q9RIS3<93>Q9L1X5 Streptomyces coelicolor BAC17684<1117>BAC17686 Corynebacterium efficiens Q9X8Y1<92>Q9X8Y2 Streptomyces coelicolor COG0457<>COG0500 - 2 - TPR repeat ** SAM-dependent methyltransferases BAC52929<379>BAC52930 Bradyrhizobium japonicum Q8YZ66<124>Q8YZ65 Nostoc sp PCC 7120 Q8YSR8<253>Q8YSR7 Nostoc sp PCC 7120 COG0596<>COG1733 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Predicted transcriptional regulators O86546<124>O86547 Streptomyces coelicolor Q98FH3<92>Q98FH2 Mesorhizobium loti Q9K3V3<175>Q9K3V2 Streptomyces coelicolor COG0673<>COG1940 - 2 - Predicted dehydrogenases and related proteins ** Transcriptional regulator/sugar kinase Q9EWT7<67>Q9EWT6 Streptomyces coelicolor Q9RDA5<57>Q9RDA4 Streptomyces coelicolor Q8ZF31<408>Q8ZF30 Yersinia pestis CO92 COG0007<>COG0583 - 2 - Uroporphyrinogen-III methylase ** Transcriptional regulator Q9PF46<104>Q9PF45 Xylella fastidiosa Q9A977<121>Q9A976 Caulobacter crescentus Q8P602<164>Q8P601 Xanthomonas campestris Q8PHC0<96>Q8PHB9 Xanthomonas axonopodis COG0009<>COG1641 - 2 - Putative translation factor (SUA5) ** Uncharacterized conserved protein P72724<6>P72725 Synechocystis sp PCC 6803 Q8Z098<262>Q8Z097 Nostoc sp PCC 7120 COG0010<>COG0423 - 2 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family ** Glycyl-tRNA synthetase (class II) Q975R8<42>Q975R7 Sulfolobus tokodaii Q9YBG0<33>SYG_AERPE Aeropyrum pernix Q97ZX9<53>Q97ZX8 Sulfolobus solfataricus COG0016<>COG0537 - 2 - Phenylalanyl-tRNA synthetase alpha subunit ** Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases SYFA_CAMJE<123>Q9PP33 Campylobacter jejuni SYFA_HELPY<81>YHIT_HELPY Helicobacter pylori 26695 YHIT_HELPY<82>SYFA_HELPJ Helicobacter pylori J99 COG0024<>COG2220 - 2 - Methionine aminopeptidase ** Predicted Zn-dependent hydrolases of the beta-lactamase fold AMPM_SULSO<54>Y099_SULSO Sulfolobus solfataricus Q9YCZ8<159>YB17_AERPE Aeropyrum pernix YE18_SULTO<54>Q971D4 Sulfolobus tokodaii COG0028<>COG0642 - 2 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] ** Signal transduction histidine kinase Q8YZN0<1039>Q8YZM9 Nostoc sp PCC 7120 O28554<183>O28553 Archaeoglobus fulgidus COG0037<>COG0226 - 2 - Predicted ATPase of the PP-loop superfamily implicated in cell cycle control ** ABC-type phosphate transport system, periplasmic component Q58421<231>Q58422 Methanococcus jannaschii Q8TUR5<76>Q8TUR4 Methanopyrus kandleri COG0039<>COG1438 - 2 - Malate/lactate dehydrogenases ** Arginine repressor MDH_ECOLI<435>ARGR_ECOLI Escherichia coli EDL933 MDH_ECOLI<369>AAN82432 Escherichia coli O6 Q8Z3E0<414>ARGR_SALTY Salmonella typhi CT18 MDH_SALTY<414>ARGR_SALTY Salmonella typhimurium LT2 AAN44740<369>ARGR_ECOLI Shigella flexneri Q9ETQ6<464>Q8ZBA2 Yersinia pestis CO92 AAO09185<373>AAO09186 Vibrio vulnificus MDH_ECOLI<435>ARGR_ECOLI Escherichia coli K12 MDH_ECOLI<435>ARGR_ECOLI Escherichia coli O157 Q8ZBA2<464>Q9ETQ6 Yersinia pestis KIM Q9KUT4<139>MDH_VIBCH Vibrio cholerae AAN53845<292>MDH_SHEON Shewanella oneidensis ARGR_HAEIN<207>MDH_HAEIN Haemophilus influenzae ARGR_PASMU<144>Q9CN86 Pasteurella multocida COG0040<>COG0402 - 2 - ATP phosphoribosyltransferase ** Cytosine deaminase and related metal-dependent hydrolases HIS1_METKA<59>Q8TYD4 Methanopyrus kandleri YF05_METTH<190>HIS1_METTH Methanothermobacter thermautotr COG0042<>COG0245 - 2 - tRNA-dihydrouridine synthase ** 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase AAN30039<12>AAN30040 Brucella suis ISDF_CAUCR<160>Q9A7I4 Caulobacter crescentus ISDF_AGRT5<262>Q8UFF3 Agrobacterium tumefaciens Wash ISDF_AGRT5<262>Q8UFF3 Agrobacterium tumefaciens Cereon ISDF_BRUME<195>Q8YHD7 Brucella melitensis BAC49750<166>BAC49751 Bradyrhizobium japonicum ISDF_RHILO<201>Q98MX8 Mesorhizobium loti ISDF_RHIME<77>Q92Q89 Sinorhizobium meliloti COG0050<>COG1132 - 2 - GTPases EFTU_DEIRA<683>Q9RSS3 Deinococcus radiodurans EFTU_HELPY<701>O25807 Helicobacter pylori 26695 EFTU_HELPJ<704>Q9ZK18 Helicobacter pylori J99 COG0065<>COG1599 - 2 - 3-isopropylmalate dehydratase large subunit ** Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins LE21_METKA<77>Q8TVF1 Methanopyrus kandleri O27438<304>LE21_METTH Methanothermobacter thermautotr COG0078<>NOG05394 - 2 - Ornithine carbamoyltransferase ** non supervised orthologous group Q971Y3<32>Q971Y2 Sulfolobus tokodaii Q9YAE7<75>Q9YAE4 Aeropyrum pernix Q97ZM2<32>Q97ZM1 Sulfolobus solfataricus COG0104<>NOG07403 - 2 - Adenylosuccinate synthase ** non supervised orthologous group BAC19407<47>BAC19408 Corynebacterium efficiens PURA_CORGL<210>Q8NM15 Corynebacterium glutamicum PURA_MYCLE<184>O69596 Mycobacterium leprae PURA_MYCTU<91>O06308 Mycobacterium tuberculosis CDC1551 PURA_MYCTU<91>O06308 Mycobacterium tuberculosis H37Rv COG0111<>COG0277 - 2 - Phosphoglycerate dehydrogenase and related dehydrogenases ** FAD/FMN-containing dehydrogenases Q9I6H5<204>Q9I6H4 Pseudomonas aeruginosa Q8P9M8<208>Q8P9M7 Xanthomonas campestris Q8PLF6<209>Q8PLF5 Xanthomonas axonopodis Q9PBD9<228>Q9PBD8 Xylella fastidiosa AAN70719<202>AAN70720 Pseudomonas putida COG0111<>COG0640 - 2 - Phosphoglycerate dehydrogenase and related dehydrogenases ** Predicted transcriptional regulators Q9HPW9<344>Q9HPW8 Halobacterium sp NRC-1 Q9Y8X9<185>Q9Y8X7 Aeropyrum pernix COG0126<>COG0589 - 2 - 3-phosphoglycerate kinase ** Universal stress protein UspA and related nucleotide-binding proteins PGK_ANASP<90>Q8YPR0 Nostoc sp PCC 7120 BAC09820<149>BAC09821 Synechococcus elongatus COG0129<>COG0583 - 2 - Dihydroxyacid dehydratase/phosphogluconate dehydratase ** Transcriptional regulator ILVD_CAUCR<99>ILVR_CAUCR Caulobacter crescentus Q8XWR2<129>ILVD_RALSO Ralstonia solanacearum COG0136<>COG0544 - 2 - Aspartate-semialdehyde dehydrogenase ** FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Q8YQY0<1079>TIG_ANASP Nostoc sp PCC 7120 TIG_SYNY3<668>DHAS_SYNY3 Synechocystis sp PCC 6803 COG0142<>COG0293 - 2 - Geranylgeranyl pyrophosphate synthase ** 23S rRNA methylase Y313_BORBU<51>O51294 Borrelia burgdorferi Y682_TREPA<93>O05708 Treponema pallidum COG0143<>COG2219 - 2 - Methionyl-tRNA synthetase ** Eukaryotic-type DNA primase, large subunit Q971C2<68>SYM_SULTO Sulfolobus tokodaii O26686<264>SYM_METTH Methanothermobacter thermautotr Q9UWW1<62>SYM_SULSO Sulfolobus solfataricus COG0150<>COG3249 - 2 - Phosphoribosylaminoimidazole (AIR) synthetase ** Uncharacterized protein conserved in bacteria Q9PFS0<51>Q9PFR9 Xylella fastidiosa Q9I513<214>Q9I512 Pseudomonas aeruginosa AAN67286<321>AAN67287 Pseudomonas putida Q8P726<79>Q8P725 Xanthomonas campestris Q8PIE0<81>Q8PID9 Xanthomonas axonopodis COG0154<>COG1309 - 2 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases ** Transcriptional regulator Q8ZSI5<31>Q8ZSI4 Nostoc sp PCC 7120 Q9EWI3<128>Q9EWI2 Streptomyces coelicolor COG0178<>COG0491 - 2 - Excinuclease ATPase subunit ** Zn-dependent hydrolases, including glyoxylases BAC18314<27>BAC18315 Corynebacterium efficiens Q8NQQ1<95>Q8NQQ0 Corynebacterium glutamicum Q9CC25<138>UVRA_MYCLE Mycobacterium leprae O06154<25>UVRA_MYCTU Mycobacterium tuberculosis CDC1551 O06154<49>UVRA_MYCTU Mycobacterium tuberculosis H37Rv COG0179<>COG1414 - 2 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) ** Transcriptional regulator Q9RJW5<273>Q9RJW4 Streptomyces coelicolor Q8Y2N5<85>Q8Y2N4 Ralstonia solanacearum COG0180<>COG0596 - 2 - Tryptophanyl-tRNA synthetase ** Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) SYW_ANASP<176>Q8YXE3 Nostoc sp PCC 7120 SYW_MYCTU<171>O53388 Mycobacterium tuberculosis CDC1551 SYW_MYCTU<25>O53387 Mycobacterium tuberculosis H37Rv Q49926<36>SYW_MYCLE Mycobacterium leprae COG0187<>COG0324 - 2 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit ** tRNA delta(2)-isopentenylpyrophosphate transferase Q8YLN3<377>MIAA_ANASP Nostoc sp PCC 7120 BAC08198<127>BAC08199 Synechococcus elongatus COG0189<>COG0784 - 2 - Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) ** CheY-like receiver GSHB_PSEAE<255>PILG_PSEAE Pseudomonas aeruginosa Q9PC30<235>GSHB_XYLFA Xylella fastidiosa AAN70558<239>AAN70559 Pseudomonas putida Q8P6P2<238>GSHB_XANCP Xanthomonas campestris Q8PHZ6<237>GSHB_XANAC Xanthomonas axonopodis COG0204<>COG0526 - 2 - 1-acyl-sn-glycerol-3-phosphate acyltransferase ** Thiol-disulfide isomerase and thioredoxins Q8REI0<235>Q8REH9 Fusobacterium nucleatum Q9K415<266>Q9K3R3 Streptomyces coelicolor COG0215<>COG0652 - 2 - Cysteinyl-tRNA synthetase ** Peptidyl-prolyl cis-trans isomerase (rotamase) SYC_YERPE<211>Q8ZCB9 Yersinia pestis CO92 SYC_VIBCH<146>Q9KQZ8 Vibrio cholerae AAO11241<278>AAO11242 Vibrio vulnificus SYC_HAEIN<103>PPIB_HAEIN Haemophilus influenzae Q8XCU0<174>SYC_ECO57 Escherichia coli EDL933 Q8ZCB9<166>SYC_YERPE Yersinia pestis KIM AAN79118<174>AAN79119 Escherichia coli O6 Q8XFG8<173>SYC_SALTI Salmonella typhi CT18 Q8XFG8<173>SYC_SALTY Salmonella typhimurium LT2 AAN42110<174>AAN42111 Shigella flexneri AAN54843<141>AAN54844 Shewanella oneidensis Q9CM91<138>SYC_PASMU Pasteurella multocida PPIB_ECOLI<174>SYC_ECOLI Escherichia coli K12 Q8XCU0<174>SYC_ECO57 Escherichia coli O157 COG0215<>COG0812 - 2 - Cysteinyl-tRNA synthetase ** UDP-N-acetylmuramate dehydrogenase MURB_BORBU<52>SYC_BORBU Borrelia burgdorferi MURB_TREPA<182>SYC_TREPA Treponema pallidum COG0221<>COG2027 - 2 - Inorganic pyrophosphatase ** D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) IPYR_MYCLE<126>O69539 Mycobacterium leprae BAC19355<125>BAC19356 Corynebacterium efficiens Q8NM80<249>Q8NM79 Corynebacterium glutamicum O06380<138>IPYR_MYCTU Mycobacterium tuberculosis CDC1551 O06380<138>IPYR_MYCTU Mycobacterium tuberculosis H37Rv COG0226<>COG0704 - 2 - ABC-type phosphate transport system, periplasmic component ** Phosphate uptake regulator Q9HS10<227>Q9HS09 Halobacterium sp NRC-1 O28916<97>O28915 Archaeoglobus fulgidus COG0231<>COG0652 - 2 - Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) ** Peptidyl-prolyl cis-trans isomerase (rotamase) EFP_ANASP<195>Q8YM80 Nostoc sp PCC 7120 Q55118<47>EFP_SYNY3 Synechocystis sp PCC 6803 COG0231<>COG1945 - 2 - Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) ** Uncharacterized conserved protein IF5A_METTH<104>PDAD_METTH Methanothermobacter thermautotr IF5A_METKA<72>PDAD_METKA Methanopyrus kandleri COG0248<>NOG05461 - 2 - Exopolyphosphatase ** non supervised orthologous group Y496_MYCLE<104>Y495_MYCLE Mycobacterium leprae BAC17237<34>BAC17238 Corynebacterium efficiens Q8NTA0<34>Q8NT99 Corynebacterium glutamicum Y495_MYCTU<32>Y496_MYCTU Mycobacterium tuberculosis CDC1551 Y495_MYCTU<80>Y496_MYCTU Mycobacterium tuberculosis H37Rv COG0251<>COG0500 - 2 - Putative translation initiation inhibitor, yjgF family ** SAM-dependent methyltransferases Q9YBU8<309>Q9YBU6 Aeropyrum pernix AAN50634<119>AAN50635 Leptospira interrogans COG0252<>COG0561 - 2 - L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D ** Predicted hydrolases of the HAD superfamily Q9CHJ5<192>Q9CHJ4 Lactococcus lactis AAN59453<58>AAN59454 Streptococcus mutans Q99YB4<72>Q99YB3 Streptococcus pyogenes M1 Q97NM3<66>Q97NM2 Streptococcus pneumoniae TIGR4 AAL00614<36>AAL00615 Streptococcus pneumoniae R6 Q99YB4<72>Q8NZL6 Streptococcus pyogenes M18 Q8K613<73>Q8K612 Streptococcus pyogenes M3 AAN00542<69>AAN00543 Streptococcus agalactiae COG0253<>NOG15388 - 2 - Diaminopimelate epimerase ** non supervised orthologous group BAC09846<31>BAC09847 Synechococcus elongatus Q8YVD1<231>DAP2_ANASP Nostoc sp PCC 7120 COG0254<>COG1132 - 2 - Ribosomal protein L31 ** ABC-type multidrug transport system, ATPase and permease components RL31_AGRT5<262>Q8U9I4 Agrobacterium tumefaciens Wash RL31_BRUME<175>Q8YIW6 Brucella melitensis BAC46772<169>BAC46773 Bradyrhizobium japonicum RL31_RHIME<290>Q92M72 Sinorhizobium meliloti Q9A3D0<128>RL31_CAUCR Caulobacter crescentus Q8U9I4<262>RL31_AGRT5 Agrobacterium tumefaciens Cereon AAN30615<316>RL31_BRUME Brucella suis Q98F51<207>RL31_RHILO Mesorhizobium loti COG0258<>NOG07351 - 2 - 5-3 exonuclease (including N-terminal domain of PolI) ** non supervised orthologous group Q9HT80<78>Q9HT79 Pseudomonas aeruginosa Q8P3P9<78>Q8P3P8 Xanthomonas campestris Q8PF75<77>Q8PF74 Xanthomonas axonopodis Q9PEC6<85>Q9PEC5 Xylella fastidiosa AAN65756<76>AAN65757 Pseudomonas putida COG0265<>COG0327 - 2 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain ** Uncharacterized conserved protein AAN66925<121>AAN66926 Pseudomonas putida Y8E5_PSEAE<117>Q9HVX1 Pseudomonas aeruginosa YT31_RALSO<20>Q8XV99 Ralstonia solanacearum COG0268<>COG1109 - 2 - Ribosomal protein S20 ** Phosphomannomutase Q8KFR2<213>RS20_CHLTE Chlorobium tepidum GLMM_HELPY<90>RS20_HELPY Helicobacter pylori 26695 GLMM_HELPJ<90>RS20_HELPJ Helicobacter pylori J99 COG0271<>COG2214 - 2 - Stress-induced morphogen (activity unknown) ** DnaJ-class molecular chaperone Q8U9V1<196>Q8U9V2 Agrobacterium tumefaciens Cereon Q8YJN7<193>Q8YJN5 Brucella melitensis Q9A433<57>Q9A432 Caulobacter crescentus Q8U9V2<115>Q8U9V1 Agrobacterium tumefaciens Wash AAN30914<187>AAN30916 Brucella suis BAC45449<108>BAC45450 Bradyrhizobium japonicum Q98FY6<168>Q98FY5 Mesorhizobium loti Q92MF0<227>Q92ME9 Sinorhizobium meliloti COG0272<>COG0784 - 2 - NAD-dependent DNA ligase (contains BRCT domain type II) ** CheY-like receiver DNLJ_HELPY<78>O25337 Helicobacter pylori 26695 DNLJ_HELPJ<71>Q9ZLM0 Helicobacter pylori J99 O51501<221>DNLJ_BORBU Borrelia burgdorferi COG0276<>COG0500 - 2 - Protoheme ferro-lyase (ferrochelatase) ** SAM-dependent methyltransferases Q8YQR9<94>HEMZ_ANASP Nostoc sp PCC 7120 Y829_SYNY3<113>HEMZ_SYNY3 Synechocystis sp PCC 6803 COG0280<>COG1323 - 2 - Phosphotransacetylase ** Predicted nucleotidyltransferase Q8R9V3<123>Q8R9V2 Thermoanaerobacter tengcongensis Q8XJN1<337>Q8XJN0 Clostridium perfringens Q97IA9<265>PTA_CLOAB Clostridium acetobutylicum COG0305<>COG0534 - 2 - Replicative DNA helicase ** Na+-driven multidrug efflux pump AAN24268<56>AAN24269 Bifidobacterium longum Q9X8U6<451>Q9X8U7 Streptomyces coelicolor COG0309<>COG2007 - 2 - Hydrogenase maturation factor ** Ribosomal protein S8E O26307<246>RS8E_METTH Methanothermobacter thermautotr Q8TV56<62>RS8E_METKA Methanopyrus kandleri COG0318<>COG0642 - 2 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II ** Signal transduction histidine kinase Q9A9Q3<238>Q9A9Q2 Caulobacter crescentus Q9HWI4<246>Q9HWI3 Pseudomonas aeruginosa AAN69153<194>AAN69154 Pseudomonas putida COG0328<>COG0500 - 2 - Ribonuclease HI ** SAM-dependent methyltransferases P73154<57>P73155 Synechocystis sp PCC 6803 Q9JYE6<114>RNH_NEIMB Neisseria meningitidis B Q9JTE0<129>RNH_NEIMA Neisseria meningitidis A COG0343<>COG3400 - 2 - Queuine/archaeosine tRNA-ribosyltransferase ** Uncharacterized protein conserved in bacteria TGT_HELPY<51>O25058 Helicobacter pylori 26695 TGT_HELPJ<57>Q9ZMF3 Helicobacter pylori J99 Q9PNT1<30>TGT_CAMJE Campylobacter jejuni COG0361<>COG1734 - 2 - Translation initiation factor 1 (IF-1) ** DnaK suppressor protein O51190<115>IF1_BORBU Borrelia burgdorferi O83134<170>IF1_TREPA Treponema pallidum COG0367<>COG1622 - 2 - Asparagine synthase (glutamine-hydrolyzing) ** Heme/copper-type cytochrome/quinol oxidases, subunit 2 Q9CCF2<143>Q9CCF1 Mycobacterium leprae BAC18897<536>BAC18898 Corynebacterium efficiens Q8NNK2<519>Q8NNK1 Corynebacterium glutamicum COX2_MYCTU<246>ASNH_MYCTU Mycobacterium tuberculosis CDC1551 COX2_MYCTU<246>ASNH_MYCTU Mycobacterium tuberculosis H37Rv COG0371<>COG0638 - 2 - Glycerol dehydrogenase and related enzymes ** 20S proteasome, alpha and beta subunits EGSA_AERPE<95>Q9YER0 Aeropyrum pernix Q8TW10<1474>EGSA_METKA Methanopyrus kandleri COG0423<>COG0640 - 2 - Glycyl-tRNA synthetase (class II) ** Predicted transcriptional regulators BAC18988<294>BAC18989 Corynebacterium efficiens Q8NNC6<242>Q8NNC5 Corynebacterium glutamicum SYG_MYCTU<182>O05840 Mycobacterium tuberculosis CDC1551 SYG_MYCTU<182>O05840 Mycobacterium tuberculosis H37Rv Q9CCG5<167>Q9CCG4 Mycobacterium leprae COG0438<>COG0596 - 2 - Glycosyltransferase ** Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) Q9A9D6<179>Q9A9D5 Caulobacter crescentus Q92IF6<33>Q92IF5 Rickettsia conorii Q9ZDI5<33>Q9ZDI4 Rickettsia prowazekii COG0451<>COG1131 - 2 - Nucleoside-diphosphate-sugar epimerases ** ABC-type multidrug transport system, ATPase component Q9A948<134>Q9A947 Caulobacter crescentus Q9HJ98<152>Q9HJ97 Thermoplasma acidophilum Q97BC9<78>Q97BC8 Thermoplasma volcanium COG0451<>COG1958 - 2 - Nucleoside-diphosphate-sugar epimerases ** Small nuclear ribonucleoprotein (snRNP) homolog O29886<60>O29885 Archaeoglobus fulgidus Q9HIT8<230>RUXX_THEAC Thermoplasma acidophilum RUXX_THEVO<123>Q97BU4 Thermoplasma volcanium COG0454<>NOG25675 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** non supervised orthologous group Q8Z0I4<390>Q8Z0I3 Nostoc sp PCC 7120 BAC09233<72>BAC09234 Synechococcus elongatus COG0457<>COG0480 - 2 - TPR repeat ** Translation elongation factors (GTPases) Q8YP20<267>Q8YP19 Nostoc sp PCC 7120 BAC09911<193>BAC09912 Synechococcus elongatus COG0457<>COG1011 - 2 - TPR repeat ** Predicted hydrolase (HAD superfamily) Q8PUI6<209>Q8PUI5 Methanosarcina mazei Q8TR22<229>Q8TR21 Methanosarcina acetivorans Q9A4L4<17>Q9A4L3 Caulobacter crescentus COG0457<>COG1122 - 2 - TPR repeat ** ABC-type cobalt transport system, ATPase component Q55648<152>Q55649 Synechocystis sp PCC 6803 Q8YWQ7<321>Q8YWQ6 Nostoc sp PCC 7120 COG0468<>COG2107 - 2 - RecA/RadA recombinase ** Predicted periplasmic solute-binding protein RECA_CAMJE<106>Q9PM03 Campylobacter jejuni O24963<99>RECA_HELPY Helicobacter pylori 26695 Q9ZMS8<99>RECA_HELPJ Helicobacter pylori J99 COG0477<>COG0624 - 2 - Permeases of the major facilitator superfamily ** Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Q97VB7<355>Q97VB6 Sulfolobus solfataricus Q97Y12<492>Q97Y11 Sulfolobus solfataricus Q9WXY3<61>Q9WXY4 Thermotoga maritima COG0477<>COG1378 - 2 - Permeases of the major facilitator superfamily ** Predicted transcriptional regulators O30210<362>O30209 Archaeoglobus fulgidus Q970G2<42>Q970G1 Sulfolobus tokodaii P95850<41>Q97WP8 Sulfolobus solfataricus COG0477<>NOG06304 - 2 - Permeases of the major facilitator superfamily ** non supervised orthologous group Q9KXM8<334>Q9KXM7 Streptomyces coelicolor Y876_MYCTU<105>Y877_MYCTU Mycobacterium tuberculosis CDC1551 Y876_MYCTU<138>Y877_MYCTU Mycobacterium tuberculosis H37Rv O33058<110>Y876_MYCLE Mycobacterium leprae COG0491<>COG2141 - 2 - Zn-dependent hydrolases, including glyoxylases ** Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Q9HQ42<1042>Q9HQ40 Halobacterium sp NRC-1 O86336<138>P96253 Mycobacterium tuberculosis CDC1551 O86336<78>P96253 Mycobacterium tuberculosis H37Rv O69589<88>O69590 Mycobacterium leprae COG0500<>COG0539 - 2 - SAM-dependent methyltransferases ** Ribosomal protein S1 BAC18266<233>BAC18267 Corynebacterium efficiens Q8NQR6<375>Q8NQR5 Corynebacterium glutamicum Q9S2K5<525>Q9S2K4 Streptomyces coelicolor COG0500<>COG1061 - 2 - SAM-dependent methyltransferases ** DNA or RNA helicases of superfamily II Q9RZ23<65>Q9RZ22 Deinococcus radiodurans Q9HJF4<185>Q9HJF3 Thermoplasma acidophilum Q97B85<77>Q97B84 Thermoplasma volcanium COG0503<>COG0773 - 2 - Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins ** UDP-N-acetylmuramate-alanine ligase Q8R750<169>MURC_THETN Thermoanaerobacter tengcongensis Q97E90<267>MURC_CLOAB Clostridium acetobutylicum Q8XHJ1<427>MURC_CLOPE Clostridium perfringens COG0511<>COG0717 - 2 - Biotin carboxyl carrier protein ** Deoxycytidine deaminase Q9PN08<148>DCD_CAMJE Campylobacter jejuni O25135<124>DCD_HELPY Helicobacter pylori 26695 DCD_HELPJ<130>Q9ZKC9 Helicobacter pylori J99 COG0515<>NOG08675 - 2 - Serine/threonine protein kinase ** non supervised orthologous group O69568<153>O69567 Mycobacterium leprae BAC18879<101>BAC18880 Corynebacterium efficiens Q8NNL9<214>Q8NNL8 Corynebacterium glutamicum O53509<31>PKNL_MYCTU Mycobacterium tuberculosis CDC1551 O53509<55>PKNL_MYCTU Mycobacterium tuberculosis H37Rv COG0516<>NOG07381 - 2 - IMP dehydrogenase/GMP reductase ** non supervised orthologous group IMDH_MYCTU<207>YY12_MYCTU Mycobacterium tuberculosis CDC1551 IMDH_MYCTU<207>YY12_MYCTU Mycobacterium tuberculosis H37Rv BAC17417<53>BAC17418 Corynebacterium efficiens Q8NSR6<156>Q8NSR5 Corynebacterium glutamicum YY12_MYCLE<155>IMDH_MYCLE Mycobacterium leprae COG0524<>COG1028 - 2 - Sugar kinases, ribokinase family ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Q9RWE1<864>Q9RWD9 Deinococcus radiodurans Q9WYD2<109>Q9WYD3 Thermotoga maritima COG0524<>COG1879 - 2 - Sugar kinases, ribokinase family ** ABC-type sugar transport system, periplasmic component Q9KZH4<254>Q9KZH3 Streptomyces coelicolor Q8Y005<308>Q8Y004 Ralstonia solanacearum COG0528<>COG1503 - 2 - Uridylate kinase ** Peptide chain release factor 1 (eRF1) RF1_METTH<154>PYRH_METTH Methanothermobacter thermautotr RF1_METKA<29>PYRH_METKA Methanopyrus kandleri COG0533<>NOG08121 - 2 - Metal-dependent proteases with possible chaperone activity ** non supervised orthologous group PSAF_ANASP<284>Q8Z0I6 Nostoc sp PCC 7120 PSAF_SYNY3<160>GCP_SYNY3 Synechocystis sp PCC 6803 COG0552<>COG0612 - 2 - Signal recognition particle GTPase ** Predicted Zn-dependent peptidases AAN70676<232>AAN70677 Pseudomonas putida Q8Y2F0<214>Q8Y2E9 Ralstonia solanacearum Q9I6C2<121>Q9I6C1 Pseudomonas aeruginosa COG0556<>NOG16461 - 2 - Helicase subunit of the DNA excision repair complex ** non supervised orthologous group UVRB_ANASP<345>Q8YXS8 Nostoc sp PCC 7120 UVRB_SYNY3<192>Q55171 Synechocystis sp PCC 6803 COG0566<>COG1254 - 2 - rRNA methylases ** Acylphosphatases AAN59358<33>AAN59359 Streptococcus mutans Q97NP7<34>Q97NP6 Streptococcus pneumoniae TIGR4 AAL00591<16>AAL00592 Streptococcus pneumoniae R6 AAN00470<32>AAN00471 Streptococcus agalactiae Q9A1C2<1575>Q9A1C1 Streptococcus pyogenes M1 Q9CHW2<323>Q9CHW1 Lactococcus lactis Q8P2D7<261>Q8P2D6 Streptococcus pyogenes M18 Q8P2D7<260>Q8K8J1 Streptococcus pyogenes M3 COG0575<>COG1964 - 2 - CDP-diglyceride synthetase ** Predicted Fe-S oxidoreductases Q8TWG2<19>Q8TWG1 Methanopyrus kandleri O26919<26>O26920 Methanothermobacter thermautotr COG0576<>COG2804 - 2 - Molecular chaperone GrpE (heat shock protein) ** Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB GRPE_SYNY3<218>Q55155 Synechocystis sp PCC 6803 Q8YUA8<386>Q8YUA7 Nostoc sp PCC 7120 COG0583<>COG1250 - 2 - Transcriptional regulator ** 3-hydroxyacyl-CoA dehydrogenase AAN67660<85>AAN67661 Pseudomonas putida Q8Y2T9<184>Q8Y2T8 Ralstonia solanacearum Q9HU01<143>Q9HU00 Pseudomonas aeruginosa COG0589<>COG0730 - 2 - Universal stress protein UspA and related nucleotide-binding proteins ** Predicted permeases O30113<144>O30112 Archaeoglobus fulgidus Q8TZ00<76>Q8TYZ9 Methanopyrus kandleri COG0596<>NOG12868 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** non supervised orthologous group Q8YTF6<198>Q8YTF5 Nostoc sp PCC 7120 Y51L_SYNY3<39>P73691 Synechocystis sp PCC 6803 COG0603<>COG0673 - 2 - Predicted PP-loop superfamily ATPase ** Predicted dehydrogenases and related proteins Q8YM46<590>Q8YM45 Nostoc sp PCC 7120 BAC09283<130>BAC09284 Synechococcus elongatus COG0617<>NOG13339 - 2 - tRNA nucleotidyltransferase/poly(A) polymerase ** non supervised orthologous group Q8YSF2<86>Q8YSF1 Nostoc sp PCC 7120 Q55428<97>P74777 Synechocystis sp PCC 6803 COG0624<>COG1758 - 2 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases ** DNA-directed RNA polymerase, subunit K/omega Q9RRJ7<175>RPOZ_DEIRA Deinococcus radiodurans Q8TV21<127>Q8TV20 Methanopyrus kandleri COG0624<>COG2171 - 2 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases ** Tetrahydrodipicolinate N-succinyltransferase BAC17975<150>BAC17976 Corynebacterium efficiens Q46064<55>DAPE_CORGL Corynebacterium glutamicum Q49948<54>Q9CCB0 Mycobacterium leprae O05302<91>O05303 Mycobacterium tuberculosis CDC1551 O05302<91>O05303 Mycobacterium tuberculosis H37Rv COG0626<>COG0717 - 2 - Cystathionine beta-lyases/cystathionine gamma-synthases ** Deoxycytidine deaminase Q8UI67<196>Q8UI65 Agrobacterium tumefaciens Wash Q8UI67<196>Q8UI65 Agrobacterium tumefaciens Cereon AAN29254<427>AAN29255 Brucella suis BAC46370<170>BAC46371 Bradyrhizobium japonicum Q98BB2<412>Q98BB1 Mesorhizobium loti Q92S95<198>Q92S94 Sinorhizobium meliloti Q9A657<73>Q9A656 Caulobacter crescentus Q8YFA6<418>Q8YFA5 Brucella melitensis COG0642<>COG0704 - 2 - Signal transduction histidine kinase ** Phosphate uptake regulator AAN25443<15>AAN25444 Bifidobacterium longum CAD55476<215>Q9L0R2 Streptomyces coelicolor COG0642<>COG1024 - 2 - Signal transduction histidine kinase ** Enoyl-CoA hydratase/carnithine racemase Q9A3L4<1773>Q9A3L2 Caulobacter crescentus Q9X7Q4<145>Q9X7Q5 Streptomyces coelicolor COG0642<>COG1562 - 2 - Signal transduction histidine kinase ** Phytoene/squalene synthetase Q8YW12<1367>Q8YW11 Nostoc sp PCC 7120 Q55474<189>Q55475 Synechocystis sp PCC 6803 COG0642<>COG2060 - 2 - Signal transduction histidine kinase ** K+-transporting ATPase, A chain P73865<339>ATKA_SYNY3 Synechocystis sp PCC 6803 Q8YSD4<389>Q8YSD3 Nostoc sp PCC 7120 COG0642<>NOG14130 - 2 - Signal transduction histidine kinase ** non supervised orthologous group Q8YT43<872>Q8YT42 Nostoc sp PCC 7120 BAC08032<217>Q8RR35 Synechococcus elongatus COG0653<>COG2834 - 2 - Preprotein translocase subunit SecA (ATPase, RNA helicase) ** Outer membrane lipoprotein-sorting protein Q9PNZ1<100>LOLA_CAMJE Campylobacter jejuni LOLA_HELPY<148>SECA_HELPY Helicobacter pylori 26695 LOLA_HELPJ<147>SECA_HELPJ Helicobacter pylori J99 COG0689<>COG1420 - 2 - RNase PH ** Transcriptional regulator of heat shock gene RNPH_CAUCR<140>HRCA_CAUCR Caulobacter crescentus RNPH_AGRT5<137>HRCA_AGRT5 Agrobacterium tumefaciens Wash RNPH_AGRT5<2>HRCA_AGRT5 Agrobacterium tumefaciens Cereon RNPH_BRUME<168>HRCA_BRUME Brucella melitensis BAC45939<175>BAC45940 Bradyrhizobium japonicum RNPH_RHIME<258>HRCA_RHIME Sinorhizobium meliloti HRCA_BRUME<168>AAN29126 Brucella suis HRCA_RHILO<158>RNPH_RHILO Mesorhizobium loti COG0721<>COG1077 - 2 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit ** Actin-like ATPase involved in cell morphogenesis AAN66557<104>AAN66558 Pseudomonas putida GATC_RALSO<478>Q8Y3C1 Ralstonia solanacearum Q9HVU0<240>GATC_PSEAE Pseudomonas aeruginosa COG0723<>NOG08116 - 2 - Rieske Fe-S protein ** non supervised orthologous group Q93SX0<229>Q8YUA0 Nostoc sp PCC 7120 Q9X9T3<115>Q9X9T2 Synechococcus elongatus COG0728<>NOG14149 - 2 - Uncharacterized membrane protein, putative virulence factor ** non supervised orthologous group Q9PPC0<104>Q9PPB9 Campylobacter jejuni O25550<168>MVIN_HELPY Helicobacter pylori 26695 Q9ZKW8<171>MVIN_HELPJ Helicobacter pylori J99 COG0745<>COG3786 - 2 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** Uncharacterized protein conserved in bacteria Q9A223<62>Q9A222 Caulobacter crescentus Q8UBT7<277>Q8UBT6 Agrobacterium tumefaciens Wash Q8UBT7<130>Q8UBT6 Agrobacterium tumefaciens Cereon AAN30896<250>AAN30897 Brucella suis BAC45885<180>BAC45886 Bradyrhizobium japonicum Q92L78<247>Q92JS3 Sinorhizobium meliloti Q8YJL7<208>Q8YJL6 Brucella melitensis Q98EH8<85>Q98EH7 Mesorhizobium loti COG0756<>NOG07395 - 2 - dUTPase ** non supervised orthologous group BAC18609<6>BAC18610 Corynebacterium efficiens Q8NPA9<66>Q8NPA8 Corynebacterium glutamicum DUT_MYCTU<26>O07200 Mycobacterium tuberculosis CDC1551 DUT_MYCTU<26>O07200 Mycobacterium tuberculosis H37Rv Q49991<26>DUT_MYCLE Mycobacterium leprae COG0766<>COG2096 - 2 - UDP-N-acetylglucosamine enolpyruvyl transferase ** Uncharacterized conserved protein BAC19253<63>BAC19254 Corynebacterium efficiens MURA_CORGL<61>Q8NML4 Corynebacterium glutamicum YD14_MYCLE<118>MURA_MYCLE Mycobacterium leprae YD14_MYCTU<69>MURA_MYCTU Mycobacterium tuberculosis CDC1551 YD14_MYCTU<69>MURA_MYCTU Mycobacterium tuberculosis H37Rv COG0769<>COG2244 - 2 - UDP-N-acetylmuramyl tripeptide synthase ** Membrane protein involved in the export of O-antigen and teichoic acid MURE_STRPY<88>Q9A195 Streptococcus pyogenes M1 MURE_STRP8<88>Q8P2B3 Streptococcus pyogenes M18 MURE_STRP3<88>Q8K8H5 Streptococcus pyogenes M3 AAN59315<110>AAN59316 Streptococcus mutans Q9CEN2<210>MURE_LACLA Lactococcus lactis Q97PS2<139>MURE_STRPN Streptococcus pneumoniae TIGR4 AAL00187<106>AAL00188 Streptococcus pneumoniae R6 AAN00261<124>AAN00262 Streptococcus agalactiae COG0828<>KOG2969 - 2 - Ribosomal protein S21 ** Uncharacterized conserved protein RS21_RICCN<25>Q92H22 Rickettsia conorii RS21_RICPR<91>Q9ZCU5 Rickettsia prowazekii Q9A3A8<152>RS21_CAUCR Caulobacter crescentus COG1028<>COG2013 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Uncharacterized conserved protein AAN49501<83>AAN49502 Leptospira interrogans Q9HMA6<114>Q9HMA5 Halobacterium sp NRC-1 COG1032<>NOG13535 - 2 - Fe-S oxidoreductase ** non supervised orthologous group Q8YP92<517>Q8YP91 Nostoc sp PCC 7120 BAC09019<217>BAC09020 Synechococcus elongatus COG1048<>COG4133 - 2 - Aconitase A ** ABC-type transport system involved in cytochrome c biogenesis, ATPase component Q9A299<160>Q9A298 Caulobacter crescentus Q8UC13<270>Q8UC12 Agrobacterium tumefaciens Wash Q8UC13<270>Q8UC12 Agrobacterium tumefaciens Cereon AAN29049<344>AAN29050 Brucella suis BAC45731<243>BAC45732 Bradyrhizobium japonicum Q92L56<271>Q92L55 Sinorhizobium meliloti Q8YEM5<323>Q8YEM3 Brucella melitensis Q98EA4<286>Q98EA3 Mesorhizobium loti COG1052<>COG3807 - 2 - Lactate dehydrogenase and related dehydrogenases ** Uncharacterized protein conserved in bacteria Q8UJ61<175>Q8UJ60 Agrobacterium tumefaciens Wash Q8UJ61<112>Q8UJ60 Agrobacterium tumefaciens Cereon Q8YEC6<315>Q8YEC5 Brucella melitensis BAC46031<331>BAC46032 Bradyrhizobium japonicum Q9A245<25>Q9A244 Caulobacter crescentus AAN31065<351>AAN31066 Brucella suis Q98BH5<149>Q98BH4 Mesorhizobium loti Q92T16<277>Q92T15 Sinorhizobium meliloti COG1131<>NOG08302 - 2 - ABC-type multidrug transport system, ATPase component ** non supervised orthologous group Q9YAK6<92>Q9YAK4 Aeropyrum pernix Q974X9<55>Q974X8 Sulfolobus tokodaii Q97W43<48>Q97W42 Sulfolobus solfataricus COG1207<>COG1338 - 2 - N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) ** Flagellar biosynthesis pathway, component FliP O25393<374>O25394 Helicobacter pylori 26695 Q9ZLF6<97>Q9ZLF5 Helicobacter pylori J99 Q9PPA3<143>Q9PPA2 Campylobacter jejuni COG1212<>COG3474 - 2 - CMP-2-keto-3-deoxyoctulosonic acid synthetase ** Cytochrome c2 Q9A4A3<157>Q9A4A2 Caulobacter crescentus Q8UJ38<151>Q8UJ37 Agrobacterium tumefaciens Wash Q8UJ38<151>Q8UJ37 Agrobacterium tumefaciens Cereon AAN28995<378>AAN28996 Brucella suis BAC46687<221>BAC46688 Bradyrhizobium japonicum Q8YEH5<246>Q8YEH4 Brucella melitensis Q98BN4<194>Q98BN3 Mesorhizobium loti Q92SX7<154>Q92SX6 Sinorhizobium meliloti COG1398<>COG4100 - 2 - Fatty-acid desaturase ** Cystathionine beta-lyase family protein involved in aluminum resistance Q44502<36>Q8YWL0 Nostoc sp PCC 7120 Q55406<111>Q55407 Synechocystis sp PCC 6803 COG1408<>COG1610 - 2 - Predicted phosphohydrolases ** Uncharacterized conserved protein BAC17080<37>BAC17081 Corynebacterium efficiens Q8NTN0<28>Q8NTM9 Corynebacterium glutamicum Q9X934<121>Q9X935 Streptomyces coelicolor COG1498<>COG4919 - 2 - Protein implicated in ribosomal biogenesis, Nop56p homolog ** Ribosomal protein S30 Q9Y9U0<146>RS30_AERPE Aeropyrum pernix Q971W4<64>Q971W3 Sulfolobus tokodaii Q97ZH4<66>Q97ZH3 Sulfolobus solfataricus COG1540<>COG3819 - 2 - Uncharacterized proteins, homologs of lactam utilization protein B ** Predicted membrane protein Q8R9J9<793>Q8R9J8 Thermoanaerobacter tengcongensis Q9RL46<267>Q9RL45 Streptomyces coelicolor COG1555<>COG1686 - 2 - DNA uptake protein and related DNA-binding proteins ** D-alanyl-D-alanine carboxypeptidase Q8XIJ9<196>Q8XIJ8 Clostridium perfringens Q8RB97<119>Q8RB96 Thermoanaerobacter tengcongensis Q97JK7<220>Q97JK6 Clostridium acetobutylicum COG1609<>COG2721 - 2 - Transcriptional regulators ** Altronate dehydratase Q9A876<161>Q9A875 Caulobacter crescentus Q8XPM3<158>Q8XPM2 Ralstonia solanacearum COG1612<>COG1622 - 2 - Uncharacterized protein required for cytochrome oxidase assembly ** Heme/copper-type cytochrome/quinol oxidases, subunit 2 Q8YYA2<349>Q8YYA1 Nostoc sp PCC 7120 Q9HRJ9<158>Q9HRJ8 Halobacterium sp NRC-1 COG1615<>NOG19617 - 2 - Uncharacterized conserved protein ** non supervised orthologous group BAC17611<38>BAC17612 Corynebacterium efficiens Q8NS94<99>Y786_CORGL Corynebacterium glutamicum Q9FCI5<36>YGA4_STRCO Streptomyces coelicolor COG1661<>COG1665 - 2 - Predicted DNA-binding protein with PD1-like DNA-binding motif ** Uncharacterized protein conserved in archaea O27298<41>O27299 Methanothermobacter thermautotr Q8TXP9<14>Q8TXP8 Methanopyrus kandleri COG1699<>COG4105 - 2 - Uncharacterized protein conserved in bacteria ** DNA uptake lipoprotein O25929<358>O25930 Helicobacter pylori 26695 Q9ZJL5<403>Q9ZJL4 Helicobacter pylori J99 Q9PNM0<161>Q9PNL9 Campylobacter jejuni COG1798<>COG2520 - 2 - Diphthamide biosynthesis methyltransferase ** Predicted methyltransferase Q9HQK6<22>Q9HQK5 Halobacterium sp NRC-1 O27901<97>O27902 Methanothermobacter thermautotr COG1959<>NOG12571 - 2 - Predicted transcriptional regulator ** non supervised orthologous group Q8YVA1<376>Q8YVA0 Nostoc sp PCC 7120 Q55432<164>Y846_SYNY3 Synechocystis sp PCC 6803 COG1983<>COG4585 - 2 - Putative stress-responsive transcriptional regulator ** Signal transduction histidine kinase BAC17428<115>BAC17429 Corynebacterium efficiens Q8NSQ8<165>Q8NSQ7 Corynebacterium glutamicum CAD55215<191>Q9KY73 Streptomyces coelicolor COG2053<>COG2075 - 2 - Ribosomal protein S28E/S33 ** Ribosomal protein L24E Q975Z9<68>RS28_SULTO Sulfolobus tokodaii Q980Q6<25>RS28_SULSO Sulfolobus solfataricus R24E_AERPE<60>RS28_AERPE Aeropyrum pernix COG2068<>COG3427 - 2 - Uncharacterized MobA-related protein ** Uncharacterized conserved protein Q9Y9R5<145>Q9Y9R3 Aeropyrum pernix Q974V2<28>Q974V1 Sulfolobus tokodaii Q97W16<27>Q97W15 Sulfolobus solfataricus COG2120<>NOG08650 - 2 - Uncharacterized proteins, LmbE homologs ** non supervised orthologous group Q50060<105>Q9CB66 Mycobacterium leprae BAC17861<191>BAC17862 Corynebacterium efficiens Q8NRQ8<199>Q8NRQ7 Corynebacterium glutamicum O53429<75>O53430 Mycobacterium tuberculosis CDC1551 O53429<102>O53430 Mycobacterium tuberculosis H37Rv COG2186<>COG4948 - 2 - Transcriptional regulators ** L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Q9RJV3<157>Q9RJV2 Streptomyces coelicolor Q8Y0G6<100>Q8Y0G5 Ralstonia solanacearum COG2217<>COG2608 - 2 - Cation transport ATPase ** Copper chaperone Q8XU45<150>Q8XU44 Ralstonia solanacearum Q9RRN6<144>Q9RRN5 Deinococcus radiodurans COG2345<>NOG04177 - 2 - Predicted transcriptional regulator ** non supervised orthologous group BAC18497<315>BAC18498 Corynebacterium efficiens Q8NQ74<457>Q8NQ73 Corynebacterium glutamicum Q49695<116>Q49688 Mycobacterium leprae O53150<18>O53151 Mycobacterium tuberculosis CDC1551 O53150<18>O53151 Mycobacterium tuberculosis H37Rv COG2805<>NOG13251 - 2 - Tfp pilus assembly protein, pilus retraction ATPase PilT ** non supervised orthologous group Q8YRW3<705>Q8YRW2 Nostoc sp PCC 7120 P74349<597>P74350 Synechocystis sp PCC 6803 COG3081<>COG3082 - 2 - Nucleoid-associated protein ** Uncharacterized protein conserved in bacteria Q8XE68<182>YEJL_ECOLI Escherichia coli EDL933 Q8ZGM5<145>AAM86474 Yersinia pestis KIM AAN81178<182>YEJL_ECOLI Escherichia coli O6 Q8XG52<180>Q8XEL6 Salmonella typhi CT18 Q8XG52<180>Q8XEL6 Salmonella typhimurium LT2 AAN43792<182>AAN43793 Shigella flexneri Q9KQF9<85>Q9KQF8 Vibrio cholerae AAO11441<149>AAO11442 Vibrio vulnificus NA37_HAEIN<117>YEJL_HAEIN Haemophilus influenzae NA37_ECOLI<182>YEJL_ECOLI Escherichia coli K12 Q8XE68<182>YEJL_ECOLI Escherichia coli O157 Q8ZGM6<178>Q8ZGM5 Yersinia pestis CO92 AAN55220<78>AAN55221 Shewanella oneidensis Q9CJV7<141>Q9CJV6 Pasteurella multocida COG3331<>COG4474 - 2 - Penicillin-binding protein-related factor A, putative recombinase ** Uncharacterized protein conserved in bacteria AAN58217<80>AAN58218 Streptococcus mutans RECU_LACLA<81>Q9CI21 Lactococcus lactis RECU_STRPN<66>Q97SJ0 Streptococcus pneumoniae TIGR4 RECU_STRPN<66>AAK99135 Streptococcus pneumoniae R6 AAM99206<75>AAM99207 Streptococcus agalactiae Q99YL3<81>RECU_STRPY Streptococcus pyogenes M1 Q8NZZ1<81>RECU_STRP3 Streptococcus pyogenes M18 Q8K6D7<81>RECU_STRP3 Streptococcus pyogenes M3 COG4956<>NOG07103 - 2 - Integral membrane protein (PIN domain superfamily) ** non supervised orthologous group Q8R7S5<265>Q8R7S4 Thermoanaerobacter tengcongensis Q97EC8<388>Q97EC7 Clostridium acetobutylicum Q8XHQ2<312>Q8XHQ1 Clostridium perfringens NOG05777<>NOG16046 - 2 - non supervised orthologous group ** non supervised orthologous group PSBO_ANASP<412>Q8YQH4 Nostoc sp PCC 7120 PSBO_SYNY3<227>P74379 Synechocystis sp PCC 6803 NOG10533<>NOG15139 - 2 - non supervised orthologous group ** non supervised orthologous group Q8YRC5<162>Q8YRC4 Nostoc sp PCC 7120 BAC08690<121>BAC08691 Synechococcus elongatus COG0029<>COG1595 - 2 - Aspartate oxidase ** DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog NADB_YERPE<188>Q8ZD79 Yersinia pestis KIM NADB_PSEAE<409>RPSH_PSEAE Pseudomonas aeruginosa AAN67048<435>AAN67049 Pseudomonas putida NADB_YERPE<188>Q8ZD79 Yersinia pestis CO92 AAO09982<351>AAO09983 Vibrio vulnificus AAN54406<190>AAN54407 Shewanella oneidensis RPOE_ECOLI<408>NADB_ECO57 Escherichia coli EDL933 RPOE_ECOLI<375>AAN81547 Escherichia coli O6 RPOE_SALTY<425>NADB_SALTI Salmonella typhi CT18 RPOE_SALTY<425>NADB_SALTY Salmonella typhimurium LT2 Q9KPA6<460>NADB_VIBCH Vibrio cholerae RPOE_ECOLI<408>NADB_ECOLI Escherichia coli K12 RPOE_ECOLI<408>NADB_ECO57 Escherichia coli O157 COG0241<>COG1135 - 2 - Histidinol phosphatase and related phosphatases ** ABC-type metal ion transport system, ATPase component Q8ZH37<187>METN_YERPE Yersinia pestis KIM AAO08824<253>AAO08825 Vibrio vulnificus Q9CK98<193>METN_PASMU Pasteurella multocida METN_ECOL6<188>YAED_ECOLI Escherichia coli EDL933 METN_ECOL6<188>AAN78733 Escherichia coli O6 METN_SALTI<190>Q8Z989 Salmonella typhi CT18 METN_SALTY<190>Q8ZRM8 Salmonella typhimurium LT2 AAN41852<188>YAED_ECOLI Shigella flexneri METN_YERPE<187>Q8ZH37 Yersinia pestis CO92 METN_VIBCH<236>Q9KTJ4 Vibrio cholerae METN_HAEIN<176>YAED_HAEIN Haemophilus influenzae METN_ECOLI<188>YAED_ECOLI Escherichia coli K12 METN_ECOL6<188>YAED_ECOLI Escherichia coli O157 COG0304<>COG0665 - 2 - 3-oxoacyl-(acyl-carrier-protein) synthase ** Glycine/D-amino acid oxidases (deaminating) Q8XCQ8<99>YFCK_ECO57 Escherichia coli EDL933 FABB_ECOLI<99>AAN81320 Escherichia coli O6 Q8XEK7<100>YFCK_SALTI Salmonella typhi CT18 Q8XEK7<100>YFCK_SALTY Salmonella typhimurium LT2 AAN43912<99>AAN43913 Shigella flexneri AAN56080<307>AAN56081 Shewanella oneidensis FABB_HAEIN<149>YF34_HAEIN Haemophilus influenzae FABB_ECOLI<99>YFCK_ECOLI Escherichia coli K12 Q8XCQ8<99>YFCK_ECO57 Escherichia coli O157 YR56_YERPE<151>Q8ZD35 Yersinia pestis KIM YR56_YERPE<172>Q8ZD35 Yersinia pestis CO92 AAO10385<129>AAO10386 Vibrio vulnificus Y338_PASMU<160>Q9CNT6 Pasteurella multocida COG0372<>COG2009 - 2 - Citrate synthase ** Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Q8X9B0<709>DHSC_ECOLI Escherichia coli EDL933 AAN79269<694>AAN79271 Escherichia coli O6 CISY_PSEAE<349>Q9I3D7 Pseudomonas aeruginosa CISY_SALTY<755>DHSC_SALTY Salmonella typhimurium LT2 Q8ZH07<710>Q8ZH06 Yersinia pestis CO92 AAN54977<417>AAN54978 Shewanella oneidensis CISY_ECOLI<709>DHSC_ECOLI Escherichia coli K12 Q8X9B0<709>DHSC_ECOLI Escherichia coli O157 Q8ZH06<710>Q8ZH07 Yersinia pestis KIM AAN69774<353>AAN69775 Pseudomonas putida AAN42220<694>AAN42221 Shigella flexneri Q9KQA9<390>Q9KQA8 Vibrio cholerae AAO08699<396>AAO08700 Vibrio vulnificus COG0802<>COG1600 - 2 - Predicted ATPase or kinase ** Uncharacterized Fe-S protein Q8XWD4<68>Q8XWD3 Ralstonia solanacearum Q8XDN9<1518>YJEE_ECOLI Escherichia coli EDL933 Q8ZIW8<1524>Q8ZIW6 Yersinia pestis KIM AAN83672<1473>AAN83674 Escherichia coli O6 Q8Z191<1503>Q8Z189 Salmonella typhi CT18 Q8ZKA8<1503>Q8ZKA6 Salmonella typhimurium LT2 AAN45738<1473>YJEE_ECOLI Shigella flexneri Q8ZIW8<1524>Q8ZIW6 Yersinia pestis CO92 Q9KV16<103>Q9KV15 Vibrio cholerae AAO09744<186>AAO09745 Vibrio vulnificus YJES_ECOLI<1518>YJEE_ECOLI Escherichia coli K12 Q8XDN9<1518>YJEE_ECOLI Escherichia coli O157 COG2186<>COG3067 - 2 - Transcriptional regulators ** Na+/H+ antiporter FADR_SALTI<220>Q8Z684 Salmonella typhi CT18 FADR_SALTY<220>Q8ZP14 Salmonella typhimurium LT2 Q9KQU8<645>Q9KQU7 Vibrio cholerae AAN55901<303>AAN55902 Shewanella oneidensis FADR_HAEIN<101>NHAB_HAEIN Haemophilus influenzae NHAB_ECOLI<222>FADR_ECOLI Escherichia coli EDL933 AAN80099<168>FADR_ECOLI Escherichia coli O6 AAN42790<143>AAN42791 Shigella flexneri Q8ZEM0<244>FADR_YERPE Yersinia pestis CO92 AAO10612<641>AAO10613 Vibrio vulnificus Q9CPJ1<154>Q9CPJ0 Pasteurella multocida NHAB_ECOLI<221>FADR_ECOLI Escherichia coli K12 NHAB_ECOLI<222>FADR_ECOLI Escherichia coli O157 COG2981<>COG3115 - 2 - Uncharacterized protein involved in cysteine biosynthesis ** Cell division protein Q8ZCJ5<210>ZIPA_YERPE Yersinia pestis KIM CYSZ_VIBCH<230>ZIPA_VIBCH Vibrio cholerae CYSZ_PASMU<172>ZIPA_PASMU Pasteurella multocida ZIPA_ECO57<230>CYSZ_ECOLI Escherichia coli EDL933 AAN81396<179>AAN81397 Escherichia coli O6 ZIPA_SALTY<232>CYSZ_SALTI Salmonella typhi CT18 ZIPA_SALTY<232>CYSZ_SALTY Salmonella typhimurium LT2 AAN43974<179>AAN43975 Shigella flexneri ZIPA_YERPE<249>Q8ZCJ5 Yersinia pestis CO92 AAO08744<296>AAO08745 Vibrio vulnificus ZIPA_HAEIN<153>CYSZ_HAEIN Haemophilus influenzae ZIPA_ECOLI<230>CYSZ_ECOLI Escherichia coli K12 ZIPA_ECO57<230>CYSZ_ECOLI Escherichia coli O157 COG0018<>COG1438 - 2 - Arginyl-tRNA synthetase ** Arginine repressor SYR_LACLA<68>Q9CE11 Lactococcus lactis Q99XL6<291>SYR_STRPY Streptococcus pyogenes M1 ARGR_STRPN<136>SYR_STRPN Streptococcus pneumoniae TIGR4 ARGR_STRPN<148>AAL00692 Streptococcus pneumoniae R6 Q8NZ23<393>SYR_STRP8 Streptococcus pyogenes M18 Q8K5J3<291>SYR_STRP3 Streptococcus pyogenes M3 AAN00960<222>AAN00961 Streptococcus agalactiae COG0165<>COG0526 - 2 - Argininosuccinate lyase ** Thiol-disulfide isomerase and thioredoxins ARLY_BRUME<315>Q8YJJ6 Brucella melitensis Q9A684<91>Q9A683 Caulobacter crescentus Q8U9X7<23>ARLY_AGRT5 Agrobacterium tumefaciens Wash AAN30870<54>AAN30871 Brucella suis BAC46645<25>BAC46646 Bradyrhizobium japonicum Q98G37<91>ARLY_RHILO Mesorhizobium loti Q92MH2<26>ARLY_RHIME Sinorhizobium meliloti COG0177<>NOG06376 - 2 - Predicted EndoIII-related endonuclease ** non supervised orthologous group Q8U7J2<110>Q8U7J1 Agrobacterium tumefaciens Wash Q8YEU5<63>Q8YEU4 Brucella melitensis Q98GU1<119>Q98GU0 Mesorhizobium loti Q9A236<64>Q9A235 Caulobacter crescentus Q8U7J1<38>Q8U7J2 Agrobacterium tumefaciens Cereon AAN29118<105>AAN29119 Brucella suis Q92T21<23>Q92T20 Sinorhizobium meliloti COG0181<>COG0533 - 2 - Porphobilinogen deaminase ** Metal-dependent proteases with possible chaperone activity AAN30781<119>AAN30782 Brucella suis HEM3_RHILO<154>Q98EI6 Mesorhizobium loti Q9ABZ9<73>HEM3_CAUCR Caulobacter crescentus Q8UC47<74>HEM3_AGRT5 Agrobacterium tumefaciens Wash Q8UC47<71>HEM3_AGRT5 Agrobacterium tumefaciens Cereon Q8YJB1<35>HEM3_BRUME Brucella melitensis Q92LH8<187>HEM3_RHIME Sinorhizobium meliloti COG0343<>NOG09371 - 2 - Queuine/archaeosine tRNA-ribosyltransferase ** non supervised orthologous group TGT_LACLA<192>Q9CJ53 Lactococcus lactis TGT_STRPN<130>Q97NH0 Streptococcus pneumoniae TIGR4 TGT_STRPN<130>AAL00672 Streptococcus pneumoniae R6 Q9A1L7<219>TGT_STRPY Streptococcus pyogenes M1 Q8P2S2<219>TGT_STRP3 Streptococcus pyogenes M18 Q8K8R2<219>TGT_STRP3 Streptococcus pyogenes M3 AAM99301<187>AAM99302 Streptococcus agalactiae COG0500<>COG1040 - 2 - SAM-dependent methyltransferases ** Predicted amidophosphoribosyltransferases Q8UA61<149>Q8UA62 Agrobacterium tumefaciens Cereon Q8YJA4<183>Q8YJA3 Brucella melitensis BAC45473<80>BAC45474 Bradyrhizobium japonicum Q9JSN1<936>Q9JSM9 Neisseria meningitidis A Q8UA62<194>Q8UA61 Agrobacterium tumefaciens Wash AAN30773<183>AAN30774 Brucella suis Q92MJ7<195>Q92MJ6 Sinorhizobium meliloti Q9K198<745>Q9K196 Neisseria meningitidis B COG0590<>COG1187 - 2 - Cytosine/adenosine deaminases ** 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Q8UHJ4<72>Q8UHJ3 Agrobacterium tumefaciens Wash Q8UHJ4<72>Q8UHJ3 Agrobacterium tumefaciens Cereon Q983N2<652>Q983N1 Mesorhizobium loti Q92RQ8<75>Q92KL3 Sinorhizobium meliloti Q9ABJ7<25>Q9ABJ6 Caulobacter crescentus Q8YB61<48>Q8YB60 Brucella melitensis BAC52760<108>BAC52761 Bradyrhizobium japonicum COG0784<>COG3741 - 2 - CheY-like receiver ** N-formylglutamate amidohydrolase Q8U947<179>Q8U946 Agrobacterium tumefaciens Wash AAN33255<319>AAN33256 Brucella suis Q9AA63<230>Q9AA62 Caulobacter crescentus Q8U946<179>Q8U947 Agrobacterium tumefaciens Cereon Q8YDX5<319>Q8YDX4 Brucella melitensis Q98H42<164>Q98H41 Mesorhizobium loti Q92M30<191>Q92M29 Sinorhizobium meliloti COG1104<>COG2945 - 2 - Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes ** Predicted hydrolase of the alpha/beta superfamily Q9A761<457>Q9A759 Caulobacter crescentus Q8UED5<56>Q8UED4 Agrobacterium tumefaciens Wash Q8UED5<56>Q8UED4 Agrobacterium tumefaciens Cereon Q8YGW2<205>Q8YGW1 Brucella melitensis Q92PK8<219>Q92PK7 Sinorhizobium meliloti AAN29855<205>AAN29856 Brucella suis Q98NR9<227>Q98NR8 Mesorhizobium loti COG1141<>NOG09379 - 2 - Ferredoxin ** non supervised orthologous group AAN58426<46>AAN58427 Streptococcus mutans Q9A0F2<49>Q9A0F1 Streptococcus pyogenes M1 Q9A0F2<49>Q9A0F1 Streptococcus pyogenes M18 Q9A0F2<50>Q8K800 Streptococcus pyogenes M3 Q9CEY0<47>Q9CEX9 Lactococcus lactis Q97PK5<52>Q97PK4 Streptococcus pneumoniae TIGR4 AAN00257<46>AAN00258 Streptococcus agalactiae COG1739<>COG4098 - 2 - Uncharacterized conserved protein ** Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) AAN58242<73>AAN58243 Streptococcus mutans AAM99241<56>AAM99242 Streptococcus agalactiae Q99YN7<56>Q99YN6 Streptococcus pyogenes M1 Q9CGK6<57>Q9CGK5 Lactococcus lactis Q97N59<56>Q97N58 Streptococcus pneumoniae TIGR4 AAL00815<56>AAL00816 Streptococcus pneumoniae R6 Q8P011<56>Q99YN6 Streptococcus pyogenes M18 COG1862<>COG2607 - 2 - Preprotein translocase subunit YajC ** Predicted ATPase (AAA+ superfamily) Q9A6U1<91>Q9A6U0 Caulobacter crescentus Q8UF37<208>Q8UF36 Agrobacterium tumefaciens Wash YAJC_BRUME<103>Q8YGT0 Brucella melitensis BAC50001<181>BAC50002 Bradyrhizobium japonicum Q98LD5<293>Q98LD4 Mesorhizobium loti AAN29817<160>YAJC_BRUME Brucella suis Q92Q21<339>Q92Q20 Sinorhizobium meliloti COG0018<>COG3102 - 2 - Arginyl-tRNA synthetase ** Uncharacterized protein conserved in bacteria SYR_YERPE<623>Q8ZEV6 Yersinia pestis CO92 SYR_PASMU<84>Q9CN85 Pasteurella multocida Q8XCH3<210>SYR_ECO57 Escherichia coli EDL933 AAN80749<210>AAN80750 Escherichia coli O6 Q8Z5V8<237>SYR_SALTI Salmonella typhi CT18 Q8ZNU9<237>SYR_SALTY Salmonella typhimurium LT2 AAN43470<210>AAN43471 Shigella flexneri Q9KQC7<134>SYR_VIBCH Vibrio cholerae AAO08682<221>AAO08683 Vibrio vulnificus YECM_HAEIN<80>SYR_HAEIN Haemophilus influenzae YECM_ECOLI<210>SYR_ECOLI Escherichia coli K12 Q8XCH3<210>SYR_ECO57 Escherichia coli O157 COG0046<>COG4623 - 2 - Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain ** Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein PUR4_ECO57<395>Q8XA45 Escherichia coli EDL933 AAN81529<258>AAN81530 Escherichia coli O6 PUR4_PSEAE<401>Q9HXN1 Pseudomonas aeruginosa PUR4_SALTI<256>Q8Z4L5 Salmonella typhi CT18 AAN44101<103>AAN44102 Shigella flexneri PUR4_YERPE<316>Q8ZCQ1 Yersinia pestis CO92 AAO08867<298>AAO08868 Vibrio vulnificus AAN56285<344>AAN56286 Shewanella oneidensis PUR4_ECOLI<396>YFHD_ECOLI Escherichia coli K12 PUR4_ECO57<395>Q8XA45 Escherichia coli O157 AAM84882<223>PUR4_YERPE Yersinia pestis KIM AAN66661<520>AAN66662 Pseudomonas putida COG0059<>COG0583 - 2 - Ketol-acid reductoisomerase ** Transcriptional regulator Q8Z381<165>ILVY_SALTY Salmonella typhi CT18 Q8ZAC2<286>Q8ZAC1 Yersinia pestis CO92 AAN57317<197>AAN57318 Shewanella oneidensis Q8X4Z8<150>ILVC_ECO57 Escherichia coli EDL933 AAM83934<283>Q8ZAC2 Yersinia pestis KIM ILVY_SALTY<164>ILVC_SALTY Salmonella typhimurium LT2 Q9KVI5<138>ILVC_VIBCH Vibrio cholerae AAO09554<142>AAO09555 Vibrio vulnificus ILVY_HAEIN<677>ILVC_HAEIN Haemophilus influenzae Q9CLF2<253>ILVC_PASMU Pasteurella multocida ILVY_ECOLI<150>ILVC_ECOLI Escherichia coli K12 Q8X4Z8<150>ILVC_ECO57 Escherichia coli O157 COG0254<>COG1198 - 2 - Ribosomal protein L31 ** Primosomal protein N (replication factor Y) RL31_PSEAE<176>Q9HUC9 Pseudomonas aeruginosa AAN70652<81>AAN70653 Pseudomonas putida RL31_SALTY<204>Q8Z2Z2 Salmonella typhi CT18 Q8X779<203>RL31_ECOLI Escherichia coli EDL933 Q8ZJJ1<186>RL31_YERPE Yersinia pestis KIM Q8ZKN8<204>RL31_SALTY Salmonella typhimurium LT2 AAN45446<131>AAN45447 Shigella flexneri Q8ZJJ1<243>RL31_YERPE Yersinia pestis CO92 Q9KNQ3<255>RL31_VIBCH Vibrio cholerae AAO09810<281>AAO09811 Vibrio vulnificus PRIA_ECOLI<203>RL31_ECOLI Escherichia coli K12 Q8X779<203>RL31_ECOLI Escherichia coli O157 COG0282<>COG3092 - 2 - Acetate kinase ** Uncharacterized protein conserved in bacteria AAM85191<422>YP64_YERPE Yersinia pestis KIM Q9KT07<347>YA99_VIBCH Vibrio cholerae AAO10602<342>AAO10603 Vibrio vulnificus ACKA_HAEIN<215>YC05_HAEIN Haemophilus influenzae YFBV_ECOLI<338>ACKA_ECOLI Escherichia coli EDL933 YFBV_SALTI<340>ACKA_SALTY Salmonella typhi CT18 YFBV_SALTY<340>ACKA_SALTY Salmonella typhimurium LT2 AAN43884<479>AAN43885 Shigella flexneri AAN55928<45>AAN55929 Shewanella oneidensis Y703_PASMU<287>ACKA_PASMU Pasteurella multocida YFBV_ECOLI<338>ACKA_ECOLI Escherichia coli K12 YFBV_ECOLI<338>ACKA_ECOLI Escherichia coli O157 COG0307<>COG0534 - 2 - Riboflavin synthase alpha chain ** Na+-driven multidrug efflux pump Q8X622<217>NORM_ECO57 Escherichia coli EDL933 AAN80516<215>AAN80517 Escherichia coli O6 Q8Z6N8<217>Q8Z6N7 Salmonella typhi CT18 Q8ZDZ9<249>Q8ZDZ8 Yersinia pestis CO92 Q9CN00<56>NORM_PASMU Pasteurella multocida RISA_ECOLI<215>NORM_ECOLI Escherichia coli K12 Q8X622<215>NORM_ECO57 Escherichia coli O157 Q8ZDZ8<249>Q8ZDZ9 Yersinia pestis KIM Q8ZPP2<217>Q8ZPP1 Salmonella typhimurium LT2 AAO10910<155>AAO10911 Vibrio vulnificus AAN55335<34>AAN55336 Shewanella oneidensis NORM_HAEIN<44>RISA_HAEIN Haemophilus influenzae COG0607<>COG0696 - 2 - Rhodanese-related sulfurtransferase ** Phosphoglyceromutase YIBN_ECOLI<245>GPMI_ECO57 Escherichia coli EDL933 Q8ZJM9<397>GPMI_YERPE Yersinia pestis KIM Q9HU54<325>GPMI_PSEAE Pseudomonas aeruginosa AAN70620<208>AAN70621 Pseudomonas putida Q8XEX1<248>GPMI_SALTY Salmonella typhimurium LT2 AAN45097<89>GPMI_SHIFL Shigella flexneri AAO09735<367>AAO09736 Vibrio vulnificus YIBN_ECOLI<245>GPMI_ECOLI Escherichia coli K12 YIBN_ECOLI<245>GPMI_ECO57 Escherichia coli O157 GPMI_SALTI<269>Q8XEX1 Salmonella typhi CT18 GPMI_YERPE<397>Q8ZJM9 Yersinia pestis CO92 GPMI_SHEON<265>AAN53137 Shewanella oneidensis COG1053<>COG2269 - 2 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit ** Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Q8XDQ0<295>SYK3_ECOLI Escherichia coli EDL933 Q8ZIX5<437>SYK3_YERPE Yersinia pestis KIM AAN83664<244>SYK3_ECOLI Escherichia coli O6 Q8XFL5<323>SYK3_SALTI Salmonella typhi CT18 Q8XFL5<323>SYK3_SALTY Salmonella typhimurium LT2 AAN45730<325>SYK3_ECOLI Shigella flexneri AAO09725<405>AAO09726 Vibrio vulnificus FRDA_HAEIN<182>SYK3_HAEIN Haemophilus influenzae Q9CP56<353>SYK3_PASMU Pasteurella multocida FRDA_ECOLI<295>SYK3_ECOLI Escherichia coli K12 Q8XDQ0<295>SYK3_ECOLI Escherichia coli O157 SYK3_VIBCH<234>Q9KNS5 Vibrio cholerae COG1067<>COG3120 - 2 - Predicted ATP-dependent protease ** Uncharacterized protein conserved in bacteria Q8XDA0<186>YCBG_ECOLI Escherichia coli EDL933 AAN79559<186>AAN79560 Escherichia coli O6 Q8Z7S2<186>Q8Z7S1 Salmonella typhi CT18 Q8ZQ69<186>Q8ZQ68 Salmonella typhimurium LT2 AAN42584<185>AAN42585 Shigella flexneri Q8ZG79<190>Q8ZG78 Yersinia pestis CO92 LONH_ECOLI<186>YCBG_ECOLI Escherichia coli K12 Q8XDA0<186>YCBG_ECOLI Escherichia coli O157 AAM86289<151>Q8ZG79 Yersinia pestis KIM AAO10975<189>AAO10976 Vibrio vulnificus YCBG_HAEIN<97>LONH_HAEIN Haemophilus influenzae Q9CNF0<165>Q9CNE9 Pasteurella multocida COG1024<>COG1309 - 2 - Enoyl-CoA hydratase/carnithine racemase ** Transcriptional regulator Q9I498<165>Q9I497 Pseudomonas aeruginosa Q9I077<88>Q9I076 Pseudomonas aeruginosa AAN69327<117>AAN69328 Pseudomonas putida Q983X0<80>Q983W9 Mesorhizobium loti Q92NC8<85>Q92NC7 Sinorhizobium meliloti COG1169<>COG1575 - 2 - Isochorismate synthase ** 1,4-dihydroxy-2-naphthoate octaprenyltransferase Q8Z0Q8<258>Q8Z0Q7 Nostoc sp PCC 7120 Q8Y6K8<175>Q8Y6K7 Listeria monocytogenes Q92AY4<175>Q92AY3 Listeria innocua BAC14282<185>BAC14283 Oceanobacillus iheyhensis AAO04338<179>AAO04340 Staphylococcus epidermidis Q99V52<182>Q99V51 Staphylococcus aureus Mu50 Q99V52<182>Q99V51 Staphylococcus aureus N315 Q99V52<182>Q8NXA3 Staphylococcus aureus MW2 COG0513<>COG4123 - 2 - Superfamily II DNA and RNA helicases ** Predicted O-methyltransferase Q8ZD82<240>AAM84862 Yersinia pestis KIM Q8ZD82<240>Q8ZD81 Yersinia pestis CO92 SRMB_HAEIN<46>YFIC_HAEIN Haemophilus influenzae Q8XA22<12>Q8XA21 Escherichia coli EDL933 AAN81548<12>AAN81549 Escherichia coli O6 Q8Z4J9<130>Q8Z4J8 Salmonella typhi CT18 Q8ZMX8<131>Q8ZMX7 Salmonella typhimurium LT2 AAN44133<12>AAN44134 Shigella flexneri Q9CJZ9<112>Q9CJZ8 Pasteurella multocida YFIC_ECOLI<12>SRMB_ECOLI Escherichia coli K12 Q8XA22<12>Q8XA21 Escherichia coli O157 COG0545<>COG2900 - 2 - FKBP-type peptidyl-prolyl cis-trans isomerases 1 ** Uncharacterized protein conserved in bacteria FKBA_ECOL6<221>SLYX_ECOLI Escherichia coli EDL933 FKBA_ECOL6<221>SLYX_ECOLI Escherichia coli O6 Q8ZLL6<220>Q8ZLL5 Salmonella typhimurium LT2 AAN44828<221>AAN44829 Shigella flexneri FKBA_ECOLI<221>SLYX_ECOLI Escherichia coli K12 FKBA_ECOL6<221>SLYX_ECOLI Escherichia coli O157 AAM87520<276>AAM87521 Yersinia pestis KIM Q8Z1Y5<220>Q8Z1Y4 Salmonella typhi CT18 Q8ZJC1<300>Q8ZJC0 Yersinia pestis CO92 SLYX_HAEIN<98>FKBY_HAEIN Haemophilus influenzae Q9CL92<92>Q9CL91 Pasteurella multocida COG0664<>COG1765 - 2 - cAMP-binding proteins Q8ZJD8<336>Q8ZJD7 Yersinia pestis KIM VFR_PSEAE<272>O05133 Pseudomonas aeruginosa AAN66054<191>AAN66055 Pseudomonas putida Q8Z1Z2<308>Q8Z1Z1 Salmonella typhi CT18 Q8ZJD8<336>Q8ZJD7 Yersinia pestis CO92 YHFA_ECOLI<302>CRP_ECOLI Escherichia coli EDL933 YHFA_ECOLI<302>CRP_ECOLI Escherichia coli O6 Q8ZLK9<308>CRP_SALTY Salmonella typhimurium LT2 AAN44838<302>CRP_ECOLI Shigella flexneri YHFA_ECOLI<302>CRP_ECOLI Escherichia coli K12 YHFA_ECOLI<302>CRP_ECOLI Escherichia coli O157 COG0671<>COG0807 - 2 - Membrane-associated phospholipid phosphatase ** GTP cyclohydrolase II PGPB_ECOLI<171>GCH2_ECOLI Escherichia coli EDL933 Q8XFP1<196>Q8XFY7 Salmonella typhimurium LT2 PGPB_HAEIN<45>GCH2_HAEIN Haemophilus influenzae Q9CMX4<76>GCH2_PASMU Pasteurella multocida AAM85628<494>Q8ZEE9 Yersinia pestis KIM AAN80212<107>AAN80213 Escherichia coli O6 Q8XFY7<196>Q8XFP1 Salmonella typhi CT18 AAN42893<107>PGPB_ECOLI Shigella flexneri Q8ZEF0<506>Q8ZEE9 Yersinia pestis CO92 GCH2_ECOLI<170>PGPB_ECOLI Escherichia coli K12 GCH2_ECOLI<170>PGPB_ECOLI Escherichia coli O157 COG0692<>COG3445 - 2 - Uracil DNA glycosylase ** Acid-induced glycyl radical enzyme UNG_YERPE<258>AAM84856 Yersinia pestis KIM UNG_YERPE<353>Q8ZD84 Yersinia pestis CO92 YFID_ECOLI<305>UNG_ECO57 Escherichia coli EDL933 AAN81552<287>AAN81554 Escherichia coli O6 Q8XFE0<319>UNG_SALTY Salmonella typhi CT18 Q8XFE0<319>UNG_SALTY Salmonella typhimurium LT2 AAN44137<287>AAN44138 Shigella flexneri YFID_HAEIN<258>UNG_HAEIN Haemophilus influenzae Q9CPH6<276>UNG_PASMU Pasteurella multocida YFID_ECOLI<305>UNG_ECOLI Escherichia coli K12 YFID_ECOLI<305>Q8X2E4 Escherichia coli O157 COG0746<>COG3084 - 2 - Molybdopterin-guanine dinucleotide biosynthesis protein A ** Uncharacterized protein conserved in bacteria MOBA_ECO57<70>YIHD_ECOLI Escherichia coli EDL933 AAN83232<40>YIHD_ECOLI Escherichia coli O6 Q8ZKU9<70>Q8XGM2 Salmonella typhimurium LT2 AAN45363<40>AAN45364 Shigella flexneri Q8ZJS4<100>Q8ZJS3 Yersinia pestis CO92 MOBA_HAEIN<87>YIHD_HAEIN Haemophilus influenzae MOBA_PASMU<65>Q9CK35 Pasteurella multocida MOBA_ECOLI<70>YIHD_ECOLI Escherichia coli K12 MOBA_ECO57<70>YIHD_ECOLI Escherichia coli O157 Q8ZJS3<100>Q8ZJS4 Yersinia pestis KIM Q8XGM2<70>Q8Z2R9 Salmonella typhi CT18 COG0782<>COG2027 - 2 - Transcription elongation factor ** D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) GREA_ECOLI<263>Q8X9K8 Escherichia coli EDL933 GREA_ECOLI<249>AAN82379 Escherichia coli O6 GREA_SALTY<248>Q8Z3H2 Salmonella typhi CT18 GREA_SALTY<248>Q8ZLS6 Salmonella typhimurium LT2 GREA_ECOLI<248>AAN44688 Shigella flexneri GREA_YERPE<258>Q8ZBB2 Yersinia pestis CO92 GREA_PASMU<167>Q9CMU2 Pasteurella multocida GREA_ECOLI<263>PBP4_ECOLI Escherichia coli K12 GREA_ECOLI<263>Q8X9K8 Escherichia coli O157 Q8ZBB2<258>AAM84267 Yersinia pestis KIM PBP4_HAEIN<164>GREA_HAEIN Haemophilus influenzae COG1522<>COG2502 - 2 - Transcriptional regulators ** Asparagine synthetase A ASNC_ECOLI<152>ASNA_ECOL6 Escherichia coli EDL933 Q8ZJT4<170>ASNA_YERPE Yersinia pestis KIM ASNC_ECOLI<152>ASNA_ECOL6 Escherichia coli O6 Q8ZKW5<151>ASNA_SALTY Salmonella typhimurium LT2 ASNC_ECOLI<152>AAN45264 Shigella flexneri Q8ZJT4<170>ASNA_YERPE Yersinia pestis CO92 ASNC_HAEIN<154>ASNA_HAEIN Haemophilus influenzae Q9CKN7<158>ASNA_PASMU Pasteurella multocida ASNC_ECOLI<152>ASNA_ECOLI Escherichia coli K12 ASNC_ECOLI<152>ASNA_ECOL6 Escherichia coli O157 ASNA_SALTI<151>Q8Z2Q8 Salmonella typhi CT18 COG2813<>COG3050 - 2 - 16S RNA G1207 methylase RsmC ** DNA polymerase III, psi subunit Q8X510<103>Q8XB47 Escherichia coli EDL933 AAN83870<103>AAN83872 Escherichia coli O6 Q8Z0V2<103>Q8Z0V1 Salmonella typhi CT18 Q8ZJW6<103>Q8ZJW5 Salmonella typhimurium LT2 AAN45817<175>AAN45818 Shigella flexneri Q8ZIR3<113>Q8ZIR2 Yersinia pestis CO92 Q9CM79<75>Q9CM78 Pasteurella multocida RSMC_ECOLI<103>HOLD_ECOLI Escherichia coli K12 Q8X510<103>Q8XB47 Escherichia coli O157 Q8ZIR2<113>Q8ZIR3 Yersinia pestis KIM HOLD_HAEIN<106>RSMC_HAEIN Haemophilus influenzae COG0537<>COG1131 - 2 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases ** ABC-type multidrug transport system, ATPase component AAN58166<65>AAN58167 Streptococcus mutans HIT_BACSU<488>ECSA_BACSU Bacillus subtilis Q97S70<68>Q97S69 Streptococcus pneumoniae TIGR4 AAK99262<68>AAK99263 Streptococcus pneumoniae R6 BAC13110<521>BAC13111 Oceanobacillus iheyhensis AAO05116<130>AAO05117 Staphylococcus epidermidis Q99YF4<72>Q99YF3 Streptococcus pyogenes M1 Q99T40<134>Q99T39 Staphylococcus aureus Mu50 Q99T40<134>Q99T39 Staphylococcus aureus N315 Q8Y561<161>Q8Y560 Listeria monocytogenes Q929F8<161>Q929F7 Listeria innocua Q99YF4<72>Q99YF3 Streptococcus pyogenes M18 Q8NVV9<134>Q99T39 Staphylococcus aureus MW2 Q99YF4<72>Q99YF3 Streptococcus pyogenes M3 COG0128<>COG4530 - 2 - 5-enolpyruvylshikimate-3-phosphate synthase ** Uncharacterized protein conserved in bacteria AROA_CAUCR<23>Q9A2H1 Caulobacter crescentus Q8YEG1<295>Q8YEG0 Brucella melitensis AROA_RHILO<168>Q98CC0 Mesorhizobium loti AAN28981<385>AAN28982 Brucella suis BAC46002<90>BAC46003 Bradyrhizobium japonicum Q92KS8<285>AROA_RHIME Sinorhizobium meliloti COG0152<>NOG07208 - 2 - Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase ** non supervised orthologous group AAN29771<256>AAN29772 Brucella suis BAC50994<310>BAC50995 Bradyrhizobium japonicum PUR7_RHILO<276>Q98NM7 Mesorhizobium loti Q9A5G0<387>PUR7_CAUCR Caulobacter crescentus Q8YGN7<256>PUR7_BRUME Brucella melitensis Q92KA6<229>PUR7_RHIME Sinorhizobium meliloti COG0183<>COG5394 - 2 - Acetyl-CoA acetyltransferase ** Uncharacterized protein conserved in bacteria BAC45491<300>BAC45492 Bradyrhizobium japonicum THIL_RHIME<223>Q52886 Sinorhizobium meliloti Q9AAT5<216>Q9AAT4 Caulobacter crescentus Q8UBT2<243>Q8UBT1 Agrobacterium tumefaciens Wash Q8UBT2<111>Q8UBT1 Agrobacterium tumefaciens Cereon Q98FB9<291>Q98FB8 Mesorhizobium loti COG0231<>COG2269 - 2 - Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) ** Truncated, possibly inactive, lysyl-tRNA synthetase (class II) EFP_AGRT5<252>Q9F112 Agrobacterium tumefaciens Wash EFP_AGRT5<252>Q9F112 Agrobacterium tumefaciens Cereon BAC49651<199>BAC49652 Bradyrhizobium japonicum EFP2_RHILO<115>Q983M4 Mesorhizobium loti Q9AA86<121>EFP_CAUCR Caulobacter crescentus Q92ST7<162>EFP_RHIME Sinorhizobium meliloti COG0329<>COG0741 - 2 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase ** Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) DAPA_BRUME<434>Q8YG59 Brucella melitensis BAC50337<186>BAC50338 Bradyrhizobium japonicum Q9A901<266>DAPA_CAUCR Caulobacter crescentus Q8UGL5<348>DAPA_AGRT5 Agrobacterium tumefaciens Cereon Q985C0<268>DAPA_RHILO Mesorhizobium loti Q92R56<297>DAP1_RHIME Sinorhizobium meliloti COG0454<>COG0624 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Q8UAH7<203>Q8UAH6 Agrobacterium tumefaciens Wash Y521_ARCFU<40>O29728 Archaeoglobus fulgidus Q986X9<40>Q986X8 Mesorhizobium loti Q92Y76<374>Q92Y75 Sinorhizobium meliloti Q8UAH6<287>Q8UAH7 Agrobacterium tumefaciens Cereon Q987H6<225>Q987H5 Mesorhizobium loti COG0477<>COG1622 - 2 - Permeases of the major facilitator superfamily ** Heme/copper-type cytochrome/quinol oxidases, subunit 2 BAC45413<86>BAC45414 Bradyrhizobium japonicum Q987Z2<303>Q987Z1 Mesorhizobium loti Q92U28<345>Q92U27 Sinorhizobium meliloti Q9A7F0<211>Q9A7E9 Caulobacter crescentus Q8UIZ9<381>Q8UIZ8 Agrobacterium tumefaciens Wash Q8UIZ9<246>Q8UIZ8 Agrobacterium tumefaciens Cereon COG0596<>COG4977 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Q8UJT6<230>Q8UJT5 Agrobacterium tumefaciens Wash Q8UAB1<129>Q8UAB2 Agrobacterium tumefaciens Cereon Q8UJT6<80>Q8UJT5 Agrobacterium tumefaciens Cereon Q9RJG9<104>Q9RJG8 Streptomyces coelicolor Q92XA8<148>Q92XA7 Sinorhizobium meliloti Q8UAB2<129>Q8UAB1 Agrobacterium tumefaciens Wash COG0745<>COG1840 - 2 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** ABC-type Fe3+ transport system, periplasmic component Q8U6M5<218>Q8U6M4 Agrobacterium tumefaciens Wash Q8UCL7<81>Q8UCL6 Agrobacterium tumefaciens Wash Q8UCL7<60>Q8UCL6 Agrobacterium tumefaciens Cereon Q92TS0<78>Q926E4 Sinorhizobium meliloti Q8U6M4<218>Q8U6M5 Agrobacterium tumefaciens Cereon Q8XV97<26>Q8XV96 Ralstonia solanacearum COG0860<>COG1530 - 2 - N-acetylmuramoyl-L-alanine amidase ** Ribonucleases G and E Q9A750<511>Q9A749 Caulobacter crescentus Q8YGV1<775>Q8YGV0 Brucella melitensis Q8UFQ8<646>Q8UFQ7 Agrobacterium tumefaciens Wash BAC49570<702>BAC49571 Bradyrhizobium japonicum Q98NB6<652>Q98NB5 Mesorhizobium loti Q92QJ4<759>Q926D3 Sinorhizobium meliloti COG1072<>COG2813 - 2 - Panthothenate kinase ** 16S RNA G1207 methylase RsmC AAM99835<106>AAM99836 Streptococcus agalactiae AAN58818<96>AAN58819 Streptococcus mutans Q99ZH2<268>COAA_STRPY Streptococcus pyogenes M1 Q9CFM4<188>COAA_LACLA Lactococcus lactis Q8P0W0<268>COAA_STRP8 Streptococcus pyogenes M18 Q8K7C8<268>COAA_STRP3 Streptococcus pyogenes M3 COG1078<>NOG09375 - 2 - HD superfamily phosphohydrolases ** non supervised orthologous group Q9A0U1<82>Q9A0U0 Streptococcus pyogenes M1 Q9CGM0<169>Q9CGL9 Lactococcus lactis Q8P1V9<343>Q9A0U0 Streptococcus pyogenes M18 Q8K868<82>Q9A0U0 Streptococcus pyogenes M3 AAM99414<76>AAM99415 Streptococcus agalactiae Q97QD0<72>Q97QC9 Streptococcus pneumoniae TIGR4 COG1596<>COG3206 - 2 - Periplasmic protein involved in polysaccharide export ** Uncharacterized protein involved in exopolysaccharide biosynthesis Q8UG06<211>Q8UG05 Agrobacterium tumefaciens Wash Q8UG06<211>Q8UG05 Agrobacterium tumefaciens Cereon Q982Y7<303>Q982Y6 Mesorhizobium loti Q92QS4<210>Q92QS3 Sinorhizobium meliloti Q9A5L6<107>Q9A5L5 Caulobacter crescentus BAC51574<1917>BAC51576 Bradyrhizobium japonicum COG2188<>COG3624 - 2 - Transcriptional regulators ** Uncharacterized enzyme of phosphonate metabolism BAC46485<63>BAC46486 Bradyrhizobium japonicum Q98GG5<121>Q98GG4 Mesorhizobium loti YPF0_RHIME<126>PHNG_RHIME Sinorhizobium meliloti Q8YUV6<355>Q8YUV5 Nostoc sp PCC 7120 Q8UIW0<83>Q8UIV9 Agrobacterium tumefaciens Wash Q8UIW0<83>Q8UIV9 Agrobacterium tumefaciens Cereon COG2913<>NOG06402 - 2 - Small protein A (tmRNA-binding) ** non supervised orthologous group Q9A8I8<119>Q9A8I7 Caulobacter crescentus Q8UG66<273>Q8UG65 Agrobacterium tumefaciens Wash AAN29701<90>AAN29702 Brucella suis Q92KF5<138>Q92KF4 Sinorhizobium meliloti Q8YGH6<105>Q8YGH5 Brucella melitensis BAC50288<27>BAC50289 Bradyrhizobium japonicum COG3703<>COG4093 - 2 - Uncharacterized protein involved in cation transport ** Uncharacterized protein conserved in bacteria Q9A674<26>Q9A673 Caulobacter crescentus Q8YJK6<200>Q8YJK5 Brucella melitensis BAC46659<102>BAC46660 Bradyrhizobium japonicum Q98G14<54>Q98G13 Mesorhizobium loti Q92MG3<305>Q92MG2 Sinorhizobium meliloti AAN30879<212>AAN30881 Brucella suis COG0026<>COG2246 - 2 - Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) ** Predicted membrane protein CAD55490<85>Q9KZ84 Streptomyces coelicolor PURK_MYCTU<2>P96882 Mycobacterium tuberculosis CDC1551 Q49673<88>PURK_MYCLE Mycobacterium leprae COG0033<>COG0239 - 2 - Phosphoglucomutase ** Integral membrane protein possibly involved in chromosome condensation BAC19243<29>BAC19244 Corynebacterium efficiens Q8NMN0<100>Q8NMM9 Corynebacterium glutamicum P95090<70>CRB1_MYCTU Mycobacterium tuberculosis CDC1551 P95090<70>CRB1_MYCTU Mycobacterium tuberculosis H37Rv COG0058<>COG0366 - 2 - Glucan phosphorylase ** Glycosidases Q9L1K2<365>CAD55353 Streptomyces coelicolor YD27_MYCTU<31>PHSG_MYCTU Mycobacterium tuberculosis CDC1551 YD27_MYCTU<31>PHSG_MYCTU Mycobacterium tuberculosis H37Rv COG0063<>COG1600 - 2 - Predicted sugar kinase ** Uncharacterized Fe-S protein Q9HUL5<82>Q9HUL4 Pseudomonas aeruginosa AAN70466<66>AAN70467 Pseudomonas putida Q8P8E1<25>Q8P8E0 Xanthomonas campestris Q8PJW9<25>Q8PJW8 Xanthomonas axonopodis COG0065<>COG0583 - 2 - 3-isopropylmalate dehydratase large subunit ** Transcriptional regulator LEU2_PSEAE<163>Q9HZA2 Pseudomonas aeruginosa LEU2_XANCP<125>Q8P5K8 Xanthomonas campestris LEU2_XANAC<121>Q8PH03 Xanthomonas axonopodis AAN67599<132>AAN67600 Pseudomonas putida COG0133<>COG0583 - 2 - Tryptophan synthase beta chain ** Transcriptional regulator TRPB_PSEAE<104>TRPI_PSEAE Pseudomonas aeruginosa AAN65717<111>AAN65718 Pseudomonas putida TRPB_XANCP<112>Q8P7R7 Xanthomonas campestris TRPB_XANAC<106>Q8PJ27 Xanthomonas axonopodis COG0136<>COG2095 - 2 - Aspartate-semialdehyde dehydrogenase ** Multiple antibiotic transporter DHAS_BUCAI<338>Y449_BUCAI Buchnera aphidicola APS DHAS_ECOLI<192>YHGN_ECOLI Escherichia coli EDL933 AAN82658<132>AAN82659 Escherichia coli O6 DHAS_SALTY<127>Q8ZLG4 Salmonella typhimurium LT2 AAN44916<132>YHGN_ECOLI Shigella flexneri Q9ETB0<367>Q8ZA68 Yersinia pestis CO92 DHAS_ECOLI<193>YHGN_ECOLI Escherichia coli K12 DHAS_ECOLI<192>YHGN_ECOLI Escherichia coli O157 DHAS_BUCAP<314>Y434_BUCAP Buchnera aphidicola Schiz BAC24588<122>BAC24589 Wigglesworthia brevipalpis Q8ZA68<367>Q9ETB0 Yersinia pestis KIM COG0183<>COG0346 - 2 - Acetyl-CoA acetyltransferase ** Lactoylglutathione lyase and related lyases Q49717<92>THIL_MYCLE Mycobacterium leprae Q9L2C2<150>Q9L2C1 Streptomyces coelicolor Q8VK36<91>THIL_MYCTU Mycobacterium tuberculosis CDC1551 COG0220<>COG1194 - 2 - Predicted S-adenosylmethionine-dependent methyltransferase ** A/G-specific DNA glycosylase MT04_BUCAI<98>MUTY_BUCAI Buchnera aphidicola APS MT04_ECOLI<161>Q8XCS8 Escherichia coli EDL933 Q8ZHE9<206>AAM86889 Yersinia pestis KIM AAN81995<131>AAN81996 Escherichia coli O6 Q8Z3U1<155>Q8Z3U0 Salmonella typhi CT18 Q8ZM40<155>MUTY_SALTY Salmonella typhimurium LT2 MT04_ECOLI<272>AAN44439 Shigella flexneri Q8ZHE9<338>Q8ZHE8 Yersinia pestis CO92 AAN56365<180>AAN56366 Shewanella oneidensis MT04_ECOLI<161>MUTY_ECOLI Escherichia coli K12 MT04_ECOLI<161>Q8XCS8 Escherichia coli O157 MT04_BUCAP<109>MUTY_BUCAP Buchnera aphidicola Schiz Q9KUR3<240>MT04_VIBCH Vibrio cholerae AAO09941<274>AAO09942 Vibrio vulnificus COG0268<>COG0481 - 2 - Ribosomal protein S20 ** Membrane GTPase LepA AAO04870<293>AAO04871 Staphylococcus epidermidis LEPA_STAAM<346>Q99TR3 Staphylococcus aureus Mu50 LEPA_STAAM<346>Q99TR3 Staphylococcus aureus N315 LEPA_LISMO<233>RS20_LISMO Listeria monocytogenes LEPA_LISIN<245>RS20_LISMO Listeria innocua AAN24661<147>AAN24662 Bifidobacterium longum LEPA_STAAW<346>Q99TR3 Staphylococcus aureus MW2 COG0346<>COG0640 - 2 - Lactoylglutathione lyase and related lyases ** Predicted transcriptional regulators Q8YXV6<98>Q8YXV5 Nostoc sp PCC 7120 P71939<102>YQ41_MYCTU Mycobacterium tuberculosis CDC1551 P71939<102>YQ41_MYCTU Mycobacterium tuberculosis H37Rv COG0347<>COG2960 - 2 - Nitrogen regulatory protein PII ** Uncharacterized protein conserved in bacteria Q9HTR6<440>Q9HTR5 Pseudomonas aeruginosa AAN70799<519>AAN70800 Pseudomonas putida Q8P444<191>Q8P443 Xanthomonas campestris Q8PFP9<191>Q8PFP8 Xanthomonas axonopodis COG0398<>COG1884 - 2 - Uncharacterized conserved protein ** Methylmalonyl-CoA mutase, N-terminal domain/subunit YE91_MYCTU<191>MUTA_MYCTU Mycobacterium tuberculosis CDC1551 YE91_MYCTU<191>MUTA_MYCTU Mycobacterium tuberculosis H37Rv BAC18461<134>BAC18462 Corynebacterium efficiens Q8NQA8<280>Q8NQA7 Corynebacterium glutamicum COG0436<>COG0583 - 2 - Aspartate/tyrosine/aromatic aminotransferase ** Transcriptional regulator AAM85197<778>Q8ZDK6 Yersinia pestis KIM LRHA_ECO57<920>Q8XCW5 Escherichia coli EDL933 AAN81284<920>YFBQ_ECOLI Escherichia coli O6 Q8XRB6<181>Q8XRB5 Ralstonia solanacearum Q8Z525<932>Q8XGH1 Salmonella typhi CT18 Q8ZNE1<932>Q8XGH1 Salmonella typhimurium LT2 AAN43878<919>YFBQ_ECOLI Shigella flexneri LRHA_ECOLI<920>YFBQ_ECOLI Escherichia coli K12 LRHA_ECO57<920>Q8XCW5 Escherichia coli O157 COG0438<>COG0448 - 2 - Glycosyltransferase ** ADP-glucose pyrophosphorylase BAC17984<21>BAC17985 Corynebacterium efficiens Q8NRD5<97>Q8NRD4 Corynebacterium glutamicum O05313<175>GLGC_MYCTU Mycobacterium tuberculosis CDC1551 O05313<175>GLGC_MYCTU Mycobacterium tuberculosis H37Rv COG0461<>COG0708 - 2 - Orotate phosphoribosyltransferase ** Exonuclease III PYRE_PSEAE<81>Q51380 Pseudomonas aeruginosa AAN70856<81>AAN70857 Pseudomonas putida Q8P470<121>PYRE_XANCP Xanthomonas campestris Q8PFS6<120>PYRE_XANAC Xanthomonas axonopodis COG0481<>NOG07402 - 2 - Membrane GTPase LepA ** non supervised orthologous group BAC19052<424>BAC19053 Corynebacterium efficiens LEPA_CORGL<269>Q8NN67 Corynebacterium glutamicum LEPA_MYCTU<139>Q8VJJ6 Mycobacterium tuberculosis CDC1551 LEPA_MYCTU<21>P71738 Mycobacterium tuberculosis H37Rv COG0488<>COG0741 - 2 - ATPase components of ABC transporters with duplicated ATPase domains ** Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YJJK_ECOLI<184>Q8XB18 Escherichia coli EDL933 AAN83898<207>AAN83899 Escherichia coli O6 Q9HZI7<226>Q9HZI6 Pseudomonas aeruginosa Q8Z0T6<263>Q8Z0T5 Salmonella typhi CT18 Q8ZJU9<173>SLT_SALTY Salmonella typhimurium LT2 YJJK_ECOLI<181>AAN45838 Shigella flexneri YJJK_ECOLI<184>SLT_ECOLI Escherichia coli K12 YJJK_ECOLI<184>Q8XB18 Escherichia coli O157 AAN67743<173>AAN67744 Pseudomonas putida AAO09009<371>AAO09010 Vibrio vulnificus COG0500<>COG1434 - 2 - SAM-dependent methyltransferases ** Uncharacterized conserved protein Q8YU88<81>Q8YU87 Nostoc sp PCC 7120 Q9KRC5<90>Q9KRC4 Vibrio cholerae YCBC_ECOLI<136>Q8XDG3 Escherichia coli EDL933 Q8Z7Z8<136>Q8XF30 Salmonella typhi CT18 Q8ZQB8<136>Q8XF30 Salmonella typhimurium LT2 AAN42545<274>AAN42546 Shigella flexneri AAO10526<284>AAO10527 Vibrio vulnificus YCBC_ECOLI<136>SMTA_ECOLI Escherichia coli K12 YCBC_ECOLI<136>Q8XDG3 Escherichia coli O157 COG0513<>COG0526 - 2 - Superfamily II DNA and RNA helicases ** Thiol-disulfide isomerase and thioredoxins Q8XAT4<77>Q8XAT2 Escherichia coli EDL933 Q8ZAD8<119>Q8ZAD9 Yersinia pestis KIM RHLB_ECOLI<26>THIO_ECOLI Escherichia coli O6 Q8P4D4<199>Q8P4D3 Xanthomonas campestris RHLB_SALTY<144>THIO_ECOLI Salmonella typhimurium LT2 RHLB_ECOLI<26>AAN45291 Shigella flexneri Q9KV52<112>Q9KV51 Vibrio cholerae RHLB_ECOLI<77>THIO_ECOLI Escherichia coli K12 Q8XAT4<77>Q8XAT2 Escherichia coli O157 Q8PFZ3<199>Q8PFZ2 Xanthomonas axonopodis THIO_ECOLI<144>RHLB_SALTY Salmonella typhi CT18 Q8ZAD9<119>Q8ZAD8 Yersinia pestis CO92 AAO09435<112>AAO09436 Vibrio vulnificus AAN53489<152>AAN53490 Shewanella oneidensis COG0513<>NOG12874 - 2 - Superfamily II DNA and RNA helicases ** non supervised orthologous group Q9FBJ2<493>Q9FBJ1 Streptomyces coelicolor O05856<259>O05855 Mycobacterium tuberculosis CDC1551 O05856<259>O05855 Mycobacterium tuberculosis H37Rv COG0528<>COG0745 - 2 - Uridylate kinase ** Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain BAC07813<192>BAC07814 Synechococcus elongatus PYRH_MYCTU<199>Q10808 Mycobacterium tuberculosis CDC1551 PYRH_MYCTU<235>Q10808 Mycobacterium tuberculosis H37Rv COG0531<>COG2771 - 2 - Amino acid transporters ** DNA-binding HTH domain-containing proteins AAN68194<251>AAN68195 Pseudomonas putida Q9I3M8<201>Q9I3M7 Pseudomonas aeruginosa Q8P6Z7<190>Q8P6Z6 Xanthomonas campestris Q8PIB0<193>Q8PIA9 Xanthomonas axonopodis COG0616<>COG0778 - 2 - Periplasmic serine proteases (ClpP class) ** Nitroreductase Q8ZPV6<174>Q8XGY1 Salmonella typhimurium LT2 AAN43054<35>AAN43055 Shigella flexneri Q8ZEK3<163>Q8ZEK2 Yersinia pestis CO92 SPPA_HAEIN<98>YDJA_HAEIN Haemophilus influenzae Q9CMX9<124>Q9CMX8 Pasteurella multocida YDJA_ECOLI<161>Q8XDW5 Escherichia coli EDL933 Q8ZEK2<163>Q8ZEK3 Yersinia pestis KIM Q8XGY1<174>Q8Z6F3 Salmonella typhi CT18 YDJA_ECOLI<161>SPPA_ECOLI Escherichia coli K12 YDJA_ECOLI<161>Q8XDW5 Escherichia coli O157 COG0640<>COG0654 - 2 - Predicted transcriptional regulators ** 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Q9EX33<172>Q9EX32 Streptomyces coelicolor O53772<94>O53773 Mycobacterium tuberculosis CDC1551 O53772<103>O53773 Mycobacterium tuberculosis H37Rv COG0655<>COG1295 - 2 - Multimeric flavodoxin WrbA ** Predicted membrane protein Q8XZ48<65>Q8XZ47 Ralstonia solanacearum Q8PC76<113>Q8PC75 Xanthomonas campestris Q8PNV3<121>Q8PNV2 Xanthomonas axonopodis COG0697<>COG2521 - 2 - Permeases of the drug/metabolite transporter (DMT) superfamily ** Predicted archaeal methyltransferase Q8P510<362>Q8P509 Xanthomonas campestris Q9YDE9<518>Q9YDE8 Aeropyrum pernix Q8PPT9<189>Q8PPT8 Xanthomonas axonopodis COG0745<>COG1807 - 2 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Q8RE63<222>Q8RE62 Fusobacterium nucleatum Q8PBK0<104>Q8PBJ9 Xanthomonas campestris Q8PN53<217>Q8PN52 Xanthomonas axonopodis COG0775<>COG1168 - 2 - Nucleoside phosphorylase ** Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Q9RUD6<39>Q9RUD5 Deinococcus radiodurans YM93_MYCTU<355>YM94_MYCTU Mycobacterium tuberculosis CDC1551 YM93_MYCTU<295>YM94_MYCTU Mycobacterium tuberculosis H37Rv COG0779<>NOG12081 - 2 - Uncharacterized protein conserved in bacteria ** non supervised orthologous group YS42_MYCTU<195>O05816 Mycobacterium tuberculosis CDC1551 YS42_MYCTU<195>O05816 Mycobacterium tuberculosis H37Rv Q9KYR3<413>Q9KYR2 Streptomyces coelicolor COG0815<>COG1028 - 2 - Apolipoprotein N-acyltransferase ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Q8VJN6<89>O53537 Mycobacterium tuberculosis CDC1551 O53536<89>O53537 Mycobacterium tuberculosis H37Rv Q9K3Z8<149>Q9K3Z7 Streptomyces coelicolor COG1061<>COG1873 - 2 - DNA or RNA helicases of superfamily II ** Uncharacterized conserved protein O29889<129>O29888 Archaeoglobus fulgidus Q8U4G3<112>Q8U4G2 Pyrococcus furiosus Q9V279<116>Q9V278 Pyrococcus abyssi COG1205<>COG1278 - 2 - Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster ** Cold shock proteins BAC17115<19>BAC17116 Corynebacterium efficiens Q8NTK0<317>Q8NTJ9 Corynebacterium glutamicum CSPA_MYCTU<250>O06359 Mycobacterium tuberculosis CDC1551 CSPA_MYCTU<250>O06359 Mycobacterium tuberculosis H37Rv COG1249<>NOG06311 - 2 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes ** non supervised orthologous group Q8VJ36<100>O53356 Mycobacterium tuberculosis CDC1551 O53355<203>O53356 Mycobacterium tuberculosis H37Rv Q9AD81<108>Q9EWF0 Streptomyces coelicolor COG1271<>COG4988 - 2 - Cytochrome bd-type quinol oxidase, subunit 1 ** ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Q9AA45<124>Q9AA44 Caulobacter crescentus Q8P8K9<160>Q8P8K8 Xanthomonas campestris Q8PK41<176>Q8PK40 Xanthomonas axonopodis COG1377<>NOG07293 - 2 - Flagellar biosynthesis pathway, component FlhB ** non supervised orthologous group HRCU_RALSO<282>Q52490 Ralstonia solanacearum Q8PB93<213>Q8PB92 Xanthomonas campestris Q8PQC2<214>Q8PQC1 Xanthomonas axonopodis COG2067<>COG3691 - 2 - Long-chain fatty acid transport protein ** Uncharacterized protein conserved in bacteria AAM85146<402>AAM85147 Yersinia pestis KIM Q8ZD48<408>Q8ZD47 Yersinia pestis CO92 OM47_PASMU<164>Q9CLX9 Pasteurella multocida Q8XCN7<342>Q8XCN6 Escherichia coli EDL933 YFCZ_ECOLI<342>AAN81339 Escherichia coli O6 Q8XG86<365>Q8Z4Y8 Salmonella typhi CT18 Q8XG86<365>Q8ZNA5 Salmonella typhimurium LT2 Y400_HAEIN<207>OM11_HAEIN Haemophilus influenzae YFCZ_ECOLI<342>FADL_ECOLI Escherichia coli K12 Q8XCN7<342>Q8XCN6 Escherichia coli O157 COG2207<>COG4585 - 2 - AraC-type DNA-binding domain-containing proteins ** Signal transduction histidine kinase Q8P8R1<203>Q8P8R0 Xanthomonas campestris Q8PKK5<294>Q8PKK4 Xanthomonas axonopodis O69818<148>O69819 Streptomyces coelicolor COG2801<>COG3547 - 2 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives BAC18033<179>BAC18034 Corynebacterium efficiens BAC18754<203>BAC18755 Corynebacterium efficiens BAC17316<295>BAC17318 Corynebacterium efficiens Q98EY7<134>Q98EY6 Mesorhizobium loti COG0492<>COG0539 - 2 - Thioredoxin reductase ** Ribosomal protein S1 TRXB_CHLPN<692>RS1_CHLPN Chlamydophila pneumoniae CWL029 Q9RSY7<543>Q9RSY6 Deinococcus radiodurans TRXB_CHLPN<692>RS1_CHLPN Chlamydophila pneumoniae J138 RS1_CHLTR<245>TRXB_CHLTR Chlamydia trachomatis COG0439<>COG0583 - 2 - Biotin carboxylase ** Transcriptional regulator Q9HTD0<214>Q9HTC9 Pseudomonas aeruginosa AAN70912<190>AAN70913 Pseudomonas putida Q9I3U5<205>Q9I3U4 Pseudomonas aeruginosa AAN53915<123>AAN53916 Shewanella oneidensis COG0477<>COG0697 - 2 - Permeases of the major facilitator superfamily ** Permeases of the drug/metabolite transporter (DMT) superfamily Q8XB15<294>Q8X474 Escherichia coli EDL933 Q8ZPI5<228>EAMA_SALTY Salmonella typhimurium LT2 AAN43149<243>AAN43150 Shigella flexneri Q8RIS2<475>Q8RIS1 Fusobacterium nucleatum AAN80418<174>AAN80419 Escherichia coli O6 Q8Z701<228>Q8Z700 Salmonella typhi CT18 EAMA_ECOLI<294>YDEE_ECOLI Escherichia coli K12 Q8X3J0<195>Q8XB15 Escherichia coli O157 COG0503<>COG2195 - 2 - Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins ** Di- and tripeptidases XGPT_HAEIN<111>PEPD_HAEIN Haemophilus influenzae Q8X7N8<261>XGPT_ECOLI Escherichia coli EDL933 AAN78864<261>AAN78865 Escherichia coli O6 Q8Z934<249>XGPT_SALTY Salmonella typhi CT18 Q8ZRJ5<249>XGPT_SALTY Salmonella typhimurium LT2 AAN41944<262>XGPT_ECOLI Shigella flexneri Q9CL74<117>Q9CL73 Pasteurella multocida PEPD_ECOLI<261>XGPT_ECOLI Escherichia coli K12 Q8X7N8<261>XGPT_ECOLI Escherichia coli O157 COG0513<>COG1309 - 2 - Superfamily II DNA and RNA helicases ** Transcriptional regulator Q8X7Y8<217>Q8X7Y7 Escherichia coli EDL933 AAN79352<217>AAN79353 Escherichia coli O6 Q8Y1Z9<1128>Q8Y1Z8 Ralstonia solanacearum Q8Z878<230>Q8Z877 Salmonella typhi CT18 Q8ZQN9<230>Q8ZQN8 Salmonella typhimurium LT2 AAN42381<217>AAN42382 Shigella flexneri YBIH_ECOLI<217>RHLE_ECOLI Escherichia coli K12 Q8X7Y8<217>Q8X7Y7 Escherichia coli O157 COG0578<>COG2271 - 2 - Glycerol-3-phosphate dehydrogenase ** Sugar phosphate permease GLPA_HAEIN<293>GLPT_HAEIN Haemophilus influenzae Q9CL06<301>Q9CL05 Pasteurella multocida Q8X5A0<273>GLPA_ECOLI Escherichia coli EDL933 AAN81235<273>AAN81236 Escherichia coli O6 Q8Z555<233>Q8Z554 Salmonella typhi CT18 Q8ZNG6<273>Q8ZNG5 Salmonella typhimurium LT2 AAN43837<267>AAN43838 Shigella flexneri GLPT_ECOLI<273>GLPA_ECOLI Escherichia coli K12 Q8X5A0<273>GLPA_ECOLI Escherichia coli O157 COG0789<>COG2207 - 2 - Predicted transcriptional regulators ** AraC-type DNA-binding domain-containing proteins SOXS_ECOLI<86>SOXR_ECOLI Escherichia coli EDL933 Q9L019<111>Q9L018 Streptomyces coelicolor SOXS_ECOLI<86>AAN83480 Escherichia coli O6 Q8Z1R8<87>SOXR_SALTY Salmonella typhi CT18 SOXS_SALTY<87>SOXR_SALTY Salmonella typhimurium LT2 AAN45546<86>SOXR_ECOLI Shigella flexneri SOXS_ECOLI<86>SOXR_ECOLI Escherichia coli K12 SOXS_ECOLI<86>SOXR_ECOLI Escherichia coli O157 COG2195<>COG3842 - 2 - Di- and tripeptidases ** ABC-type spermidine/putrescine transport systems, ATPase components POTA_ECOLI<250>PEPT_ECOL6 Escherichia coli EDL933 POTA_ECOLI<205>PEPT_ECOL6 Escherichia coli O6 Q8Z7H7<251>PEPT_SALTI Salmonella typhi CT18 POTA_SALTY<251>PEPT_SALTY Salmonella typhimurium LT2 POTA_ECOLI<313>AAN42747 Shigella flexneri POTA_HAEIN<269>PEPT_HAEIN Haemophilus influenzae Q9CP06<294>PEPT_PASMU Pasteurella multocida POTA_ECOLI<250>PEPT_ECOLI Escherichia coli K12 POTA_ECOLI<250>PEPT_ECOL6 Escherichia coli O157 COG2840<>COG2890 - 2 - Uncharacterized protein conserved in bacteria ** Methylase of polypeptide chain release factors YR49_YERPE<220>AAM85153 Yersinia pestis KIM YR49_YERPE<370>Q8ZD42 Yersinia pestis CO92 AAO10379<114>AAO10380 Vibrio vulnificus YFCB_SALTY<166>YFCN_SALTY Salmonella typhi CT18 YFCB_SALTY<166>YFCN_SALTY Salmonella typhimurium LT2 YL18_VIBCH<55>YL19_VIBCH Vibrio cholerae AAN56087<108>YU81_SHEON Shewanella oneidensis YFCB_HAEIN<132>YC02_HAEIN Haemophilus influenzae Y390_PASMU<48>Y391_PASMU Pasteurella multocida COG0006<>COG1609 - 2 - Xaa-Pro aminopeptidase ** Transcriptional regulators Q9A119<174>Q9A118 Streptococcus pyogenes M1 Q8K8C2<174>Q8P237 Streptococcus pyogenes M3 AAM99593<210>AAM99594 Streptococcus agalactiae CCPA_STRMU<163>AAN59235 Streptococcus mutans Q9CF33<215>Q9CF32 Lactococcus lactis COG0149<>COG0760 - 2 - Triosephosphate isomerase ** Parvulin-like peptidyl-prolyl isomerase TPIS_CAUCR<140>Q9A732 Caulobacter crescentus AAN30058<219>AAN30059 Brucella suis BAC50072<224>BAC50073 Bradyrhizobium japonicum TPIS_RHILO<144>Q98ME5 Mesorhizobium loti Q8YHF6<219>TPIS_BRUME Brucella melitensis COG0150<>COG0628 - 2 - Phosphoribosylaminoimidazole (AIR) synthetase ** Predicted permease Q8UG98<284>Q8UG97 Agrobacterium tumefaciens Wash Q8UG98<59>Q8UG97 Agrobacterium tumefaciens Cereon Q8XW52<152>Q8XW51 Ralstonia solanacearum Q92QW2<246>Q92QW1 Sinorhizobium meliloti Q8YGC0<490>Q8YGB9 Brucella melitensis COG0260<>COG5010 - 2 - Leucyl aminopeptidase ** Flp pilus assembly protein TadD, contains TPR repeats Q9A4A0<21>Q9A499 Caulobacter crescentus Q8UIS8<98>Q8UIS7 Agrobacterium tumefaciens Wash Q8UIS8<98>Q8UIS7 Agrobacterium tumefaciens Cereon Q98BF1<15>Q98BF0 Mesorhizobium loti Q92KU3<131>Q92T36 Sinorhizobium meliloti COG0506<>COG1522 - 2 - Proline dehydrogenase ** Transcriptional regulators Q9AA07<446>Q9AA06 Caulobacter crescentus Q98L65<110>Q98L64 Mesorhizobium loti Q8U8D3<176>Q8U8D5 Agrobacterium tumefaciens Cereon Q8YCG7<175>Q8YCG6 Brucella melitensis BAC52525<115>BAC52526 Bradyrhizobium japonicum COG0561<>COG2252 - 2 - Predicted hydrolases of the HAD superfamily ** Permeases Q97SP0<136>Q97SN9 Streptococcus pneumoniae TIGR4 AAK99067<136>AAK99068 Streptococcus pneumoniae R6 Q99YE8<264>Q99YE7 Streptococcus pyogenes M1 Q9CEV3<307>Q9CEV2 Lactococcus lactis Q8K640<264>Q8K639 Streptococcus pyogenes M3 COG0604<>NOG09854 - 2 - NADPH:quinone reductase and related Zn-dependent oxidoreductases ** non supervised orthologous group Q9A3B1<88>Q9A3B0 Caulobacter crescentus AAN30637<217>AAN30638 Brucella suis BAC46768<114>BAC46769 Bradyrhizobium japonicum Q98FI0<96>Q98FH9 Mesorhizobium loti Q8YIY8<187>Q8YIY7 Brucella melitensis COG0612<>COG2501 - 2 - Predicted Zn-dependent peptidases ** Uncharacterized conserved protein AAN59743<79>AAN59744 Streptococcus mutans Q9CE72<228>Q9CE71 Lactococcus lactis Q97N46<159>Q97N45 Streptococcus pneumoniae TIGR4 AAL00832<159>AAL00833 Streptococcus pneumoniae R6 AAN01012<239>AAN01013 Streptococcus agalactiae COG0635<>COG0664 - 2 - Coproporphyrinogen III oxidase and related Fe-S oxidoreductases ** cAMP-binding proteins Q8UF01<211>Q8UF00 Agrobacterium tumefaciens Wash Q8UF01<211>Q8UF00 Agrobacterium tumefaciens Cereon Q989I5<158>Q989I4 Mesorhizobium loti Q9K117<205>Q9JQQ8 Neisseria meningitidis B Q988R0<157>Q988Q9 Mesorhizobium loti Q9JQQ8<201>Q9JSW2 Neisseria meningitidis A COG0673<>COG1737 - 2 - Predicted dehydrogenases and related proteins ** Transcriptional regulators Q9A8Q7<168>Q9A8Q6 Caulobacter crescentus AAN33896<234>AAN33897 Brucella suis Q98JM1<287>Q98JM0 Mesorhizobium loti Q8YCF7<174>Q8YCF6 Brucella melitensis Q98CV6<157>Q98CV5 Mesorhizobium loti COG0744<>COG2983 - 2 - Membrane carboxypeptidase (penicillin-binding protein) ** Uncharacterized conserved protein Q8UGV4<179>Q8UGV3 Agrobacterium tumefaciens Wash Q8UGV4<170>Q8UGV3 Agrobacterium tumefaciens Cereon BAC48367<295>BAC48368 Bradyrhizobium japonicum Q92R95<121>Q92R94 Sinorhizobium meliloti Q9A3C8<55>Q9A3C7 Caulobacter crescentus COG1012<>COG1414 - 2 - NAD-dependent aldehyde dehydrogenases ** Transcriptional regulator Q93RV5<123>Q93RV4 Streptomyces coelicolor Q8YIQ7<118>Q8YIQ6 Brucella melitensis Q9WWD6<56>Q8UKH2 Agrobacterium tumefaciens Wash Q9WWD6<41>Q8UKH2 Agrobacterium tumefaciens Cereon AAN30541<118>AAN30542 Brucella suis COG1194<>COG5389 - 2 - A/G-specific DNA glycosylase ** Uncharacterized protein conserved in bacteria Q8UH85<99>Q8U5I1 Agrobacterium tumefaciens Cereon AAN29436<274>AAN29437 Brucella suis Q92RF0<30>Q92RE9 Sinorhizobium meliloti Q9AB56<48>Q9AB55 Caulobacter crescentus Q8YFS9<223>Q8YFS8 Brucella melitensis COG1214<>NOG07973 - 2 - Inactive homolog of metal-dependent proteases, putative molecular chaperone ** non supervised orthologous group Q99Y44<285>Q99Y43 Streptococcus pyogenes M1 Q8NZG5<284>Q99Y43 Streptococcus pyogenes M18 Q8K5W9<284>Q99Y43 Streptococcus pyogenes M3 AAN00622<179>AAN00623 Streptococcus agalactiae Q9CIR5<310>Q9CIR4 Lactococcus lactis COG1940<>COG4213 - 2 - Transcriptional regulator/sugar kinase ** ABC-type xylose transport system, periplasmic component AAN25479<252>AAN25480 Bifidobacterium longum Q8U9Z8<74>Q8U9Z9 Agrobacterium tumefaciens Cereon Q92UD6<386>Q926F3 Sinorhizobium meliloti Q8U9Z9<233>Q8U9Z8 Agrobacterium tumefaciens Wash Q98FL9<274>Q98FL8 Mesorhizobium loti COG0413<>COG1893 - 2 - Ketopantoate hydroxymethyltransferase ** Ketopantoate reductase AAO05783<43>AAO05784 Staphylococcus epidermidis PANB_STAAM<73>Q99R37 Staphylococcus aureus Mu50 PANB_STAAN<73>Q99R37 Staphylococcus aureus N315 PANB_STAAN<73>Q8NUN1 Staphylococcus aureus MW2 PANE_PYRAE<33>PANB_PYRAE Pyrobaculum aerophilum BAC15229<93>BAC15230 Oceanobacillus iheyhensis COG0492<>COG1522 - 2 - Thioredoxin reductase ** Transcriptional regulators TRXB_ECOLI<545>LRP_ECOLI Escherichia coli EDL933 AAN79497<370>LRP_ECOLI Escherichia coli O6 Q98I59<248>Q98I58 Mesorhizobium loti Q92PZ6<434>LRP_RHIME Sinorhizobium meliloti Q8XF12<547>Q8Z815 Salmonella typhi CT18 Q8XF12<546>LRP_SALTY Salmonella typhimurium LT2 AAN42480<394>AAN42481 Shigella flexneri Q8ZGC9<767>Q8ZGC8 Yersinia pestis CO92 AAN55343<1548>AAN55344 Shewanella oneidensis TRXB_ECOLI<545>LRP_ECOLI Escherichia coli K12 TRXB_ECOLI<545>LRP_ECOLI Escherichia coli O157 Q8UDE3<255>Q8UDE2 Agrobacterium tumefaciens Wash Q8UDE3<156>Q8UDE2 Agrobacterium tumefaciens Cereon Q8ZGC8<767>Q8ZGC9 Yersinia pestis KIM BAC52644<193>BAC52645 Bradyrhizobium japonicum COG0023<>COG1996 - 2 - Translation initiation factor 1 (eIF-1/SUI1) and related proteins ** DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) SUI1_AERPE<150>Q9YBG8 Aeropyrum pernix RPOP_SULSO<96>Q97ZX6 Sulfolobus solfataricus COG0049<>COG1259 - 2 - Ribosomal protein S7 ** Uncharacterized conserved protein RS7_SULSO<76>Q980R5 Sulfolobus solfataricus RS7_AERPE<375>Q9YAU6 Aeropyrum pernix COG0112<>COG1072 - 2 - Glycine/serine hydroxymethyltransferase ** Panthothenate kinase GLYA_MYCLE<129>COAA_MYCLE Mycobacterium leprae COAA_CORGL<262>Q93PM7 Corynebacterium glutamicum COAA_MYCTU<388>GLA1_MYCTU Mycobacterium tuberculosis CDC1551 COAA_MYCTU<388>GLA1_MYCTU Mycobacterium tuberculosis H37Rv COG0128<>COG2135 - 2 - 5-enolpyruvylshikimate-3-phosphate synthase ** Uncharacterized conserved protein AROA_CORGL<170>Q8NSB2 Corynebacterium glutamicum AROA_MYCLE<47>Q9CCI2 Mycobacterium leprae O05872<55>AROA_MYCTU Mycobacterium tuberculosis CDC1551 O05872<55>AROA_MYCTU Mycobacterium tuberculosis H37Rv COG0142<>COG0644 - 2 - Geranylgeranyl pyrophosphate synthase ** Dehydrogenases (flavoproteins) Q8NT38<145>Q8NT37 Corynebacterium glutamicum Q9CBA6<31>Q9CBA5 Mycobacterium leprae O06427<16>O06428 Mycobacterium tuberculosis CDC1551 O06427<16>O06428 Mycobacterium tuberculosis H37Rv COG0160<>COG2508 - 2 - 4-aminobutyrate aminotransferase and related aminotransferases ** Regulator of polyketide synthase expression Q8NT36<141>Q8NT35 Corynebacterium glutamicum Q9L022<131>CAD55521 Streptomyces coelicolor COG0161<>COG0502 - 2 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase ** Biotin synthase and related enzymes Q8X827<87>Q8X825 Escherichia coli EDL933 Q8Z894<87>Q8Z893 Salmonella typhi CT18 BIOA_SALTY<87>BIOB_SALTY Salmonella typhimurium LT2 Q8ZGX3<99>Q8ZGX2 Yersinia pestis CO92 Q9KSZ5<127>Q9KSZ4 Vibrio cholerae BIOA_ECOLI<87>BIOB_ECOLI Escherichia coli K12 Q8X827<87>Q8X825 Escherichia coli O157 BIOB_BUCAI<79>BIOA_BUCAI Buchnera aphidicola APS Q8ZGX2<99>AAM86583 Yersinia pestis KIM AAO11274<141>AAO11275 Vibrio vulnificus AAN55768<123>AAN55769 Shewanella oneidensis BIOB_BUCAP<81>BIOA_BUCAP Buchnera aphidicola Schiz COG0192<>COG1560 - 2 - S-adenosylmethionine synthetase ** Lauroyl/myristoyl acyltransferase METK_RALSO<172>Q8Y346 Ralstonia solanacearum Q9JVV7<346>METK_NEIMA Neisseria meningitidis A COG0226<>COG1528 - 2 - ABC-type phosphate transport system, periplasmic component ** Ferritin-like protein PSTS_HAEIN<684>FTN1_HAEIN Haemophilus influenzae FTN_CAMJE<180>Q9PHQ4 Campylobacter jejuni COG0248<>COG0855 - 2 - Exopolyphosphatase ** Polyphosphate kinase Q97LE1<163>Q97LE0 Clostridium acetobutylicum Q8XZ68<74>Q8XZ67 Ralstonia solanacearum COG0287<>NOG06560 - 2 - Prephenate dehydrogenase ** non supervised orthologous group Q8NTS6<8>Q8NTS5 Corynebacterium glutamicum Q9CB34<131>Q9CB33 Mycobacterium leprae O69720<134>O69721 Mycobacterium tuberculosis CDC1551 O69720<200>O69721 Mycobacterium tuberculosis H37Rv COG0365<>COG0517 - 2 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases ** CBS domain Q8ZST7<467>Q8ZST6 Pyrobaculum aerophilum Q97U23<113>Q97U22 Sulfolobus solfataricus COG0373<>COG0457 - 2 - Glutamyl-tRNA reductase ** TPR repeat HEM1_PSEAE<144>YAG7_PSEAE Pseudomonas aeruginosa HEM1_XANCP<66>Q8PC66 Xanthomonas campestris HEM1_XANAC<57>Q8PNU3 Xanthomonas axonopodis Q9PA73<67>HEM1_XYLFA Xylella fastidiosa COG0376<>COG0735 - 2 - Catalase (peroxidase I) ** Fe2+/Zn2+ uptake regulation proteins Q8TS35<241>Q8TS34 Methanosarcina acetivorans FURH_ARCFU<88>CATA_ARCFU Archaeoglobus fulgidus COG0438<>COG2202 - 2 - Glycosyltransferase ** PAS/PAC domain O26275<170>O26276 Methanothermobacter thermautotr AAN66403<155>AAN66404 Pseudomonas putida COG0451<>COG0477 - 2 - Nucleoside-diphosphate-sugar epimerases ** Permeases of the major facilitator superfamily Q9KYL8<371>Q9KYL7 Streptomyces coelicolor Q9HKA9<1474>Q9HKA8 Thermoplasma acidophilum COG0451<>COG1309 - 2 - Nucleoside-diphosphate-sugar epimerases ** Transcriptional regulator Q9CFF8<131>Q9CFF7 Lactococcus lactis Q97DH4<116>Q97DH3 Clostridium acetobutylicum COG0454<>COG0708 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Exonuclease III Q9I0U0<145>Q9I0T9 Pseudomonas aeruginosa Q9RKB3<48>Q9RKB2 Streptomyces coelicolor COG0463<>COG0673 - 2 - Glycosyltransferases involved in cell wall biogenesis ** Predicted dehydrogenases and related proteins Q8PXU5<1235>Q8PXU4 Methanosarcina mazei Q8TZR8<108>Q8TZR7 Pyrococcus furiosus Q9UXX5<166>Q9UXX4 Pyrococcus abyssi O59540<77>O59539 Pyrococcus horikoshii COG0467<>COG1145 - 2 - RecA-superfamily ATPases implicated in signal transduction ** Ferredoxin O29893<52>O29892 Archaeoglobus fulgidus Q8TJ17<1042>Q8TJ16 Methanosarcina acetivorans COG0470<>COG2114 - 2 - ATPase involved in DNA replication ** Adenylate cyclase, family 3 (some proteins contain HAMP domain) O06363<77>O06362 Mycobacterium tuberculosis CDC1551 O06363<86>O06362 Mycobacterium tuberculosis H37Rv Q8NTJ6<548>Q8NTJ5 Corynebacterium glutamicum O69547<156>O69546 Mycobacterium leprae COG0477<>COG0513 - 2 - Permeases of the major facilitator superfamily ** Superfamily II DNA and RNA helicases Q97WT1<68>Q97WT0 Sulfolobus solfataricus Q97X64<63>Q97X63 Sulfolobus solfataricus Q9HYE0<186>Q9HYD9 Pseudomonas aeruginosa COG0477<>COG0531 - 2 - Permeases of the major facilitator superfamily ** Amino acid transporters Q9HIG2<299>Q9HIG1 Thermoplasma acidophilum Q8XR22<430>Q8XR21 Ralstonia solanacearum COG0477<>COG0673 - 2 - Permeases of the major facilitator superfamily ** Predicted dehydrogenases and related proteins Q9RKP4<110>Q9RKP3 Streptomyces coelicolor Q9HK27<607>Q9HK26 Thermoplasma acidophilum COG0477<>COG0679 - 2 - Permeases of the major facilitator superfamily ** Predicted permeases AAN68690<361>AAN68691 Pseudomonas putida BAC08107<37>BAC08108 Synechococcus elongatus COG0477<>COG3226 - 2 - Permeases of the major facilitator superfamily ** Uncharacterized protein conserved in bacteria Q8X6T0<84>Q8X6S8 Escherichia coli EDL933 Q8Z853<168>Q8Z852 Salmonella typhi CT18 Q8ZQK6<168>Q8ZQK5 Salmonella typhimurium LT2 AAN42431<54>AAN42432 Shigella flexneri YBJJ_ECOLI<84>YBJK_ECOLI Escherichia coli K12 Q8X6T0<84>Q8X6S8 Escherichia coli O157 Q9F2S8<126>Q9F2S7 Streptomyces coelicolor COG0491<>COG1309 - 2 - Zn-dependent hydrolases, including glyoxylases ** Transcriptional regulator Q97D03<170>Q97D02 Clostridium acetobutylicum Q53901<9691>Q93IZ0 Streptomyces coelicolor COG0494<>COG1011 - 2 - NTP pyrophosphohydrolases including oxidative damage repair enzymes ** Predicted hydrolase (HAD superfamily) Q9HU13<126>Q9HU12 Pseudomonas aeruginosa Q9CKR2<81>Q9CKR1 Pasteurella multocida AAN65890<65>AAN65891 Pseudomonas putida COG0502<>COG1040 - 2 - Biotin synthase and related enzymes ** Predicted amidophosphoribosyltransferases Q8PDF0<44>Q8PDE9 Xanthomonas campestris Q8PQD7<44>Q8PQD6 Xanthomonas axonopodis Q9PH81<50>Q9PH80 Xylella fastidiosa AAN65992<90>AAN65993 Pseudomonas putida COG0534<>COG1876 - 2 - Na+-driven multidrug efflux pump ** D-alanyl-D-alanine carboxypeptidase Q97E21<2619>Q97E20 Clostridium acetobutylicum O51529<119>O51530 Borrelia burgdorferi COG0556<>COG1448 - 2 - Helicase subunit of the DNA excision repair complex ** Aspartate/tyrosine/aromatic aminotransferase UVRB_PSEAE<188>AAT_PSEAE Pseudomonas aeruginosa Q8Y0N3<317>UVRB_RALSO Ralstonia solanacearum COG0564<>COG0772 - 2 - Pseudouridylate synthases, 23S RNA-specific ** Bacterial cell division membrane protein Q9PN18<78>Q9PN17 Campylobacter jejuni RODA_HELPY<1394>Y745_HELPY Helicobacter pylori 26695 COG0577<>COG4585 - 2 - ABC-type antimicrobial peptide transport system, permease component ** Signal transduction histidine kinase Q9AK94<174>Q9AK93 Streptomyces coelicolor Q8NP16<93>Q8NP15 Corynebacterium glutamicum COG0583<>COG1757 - 2 - Transcriptional regulator ** Na+/H+ antiporter Q97L22<139>Q97L21 Clostridium acetobutylicum AAN24918<219>AAN24919 Bifidobacterium longum COG0583<>COG1788 - 2 - Transcriptional regulator ** Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Q9I2B1<132>Q9I2B0 Pseudomonas aeruginosa AAN68729<141>AAN68730 Pseudomonas putida ATOD_HAEIN<206>Y775_HAEIN Haemophilus influenzae COG0583<>COG2258 - 2 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria Q9I608<102>Q9I607 Pseudomonas aeruginosa O86804<64>O86805 Streptomyces coelicolor COG0583<>COG3403 - 2 - Transcriptional regulator ** Uncharacterized conserved protein Q9RWQ2<287>Q9RWQ1 Deinococcus radiodurans AAN68002<161>AAN68003 Pseudomonas putida COG0583<>COG4992 - 2 - Transcriptional regulator ** Ornithine/acetylornithine aminotransferase AAN66002<211>AAN66003 Pseudomonas putida Q8Y322<141>Q8Y321 Ralstonia solanacearum COG0589<>COG0664 - 2 - Universal stress protein UspA and related nucleotide-binding proteins ** cAMP-binding proteins Q9RIZ8<659>Q9RIZ7 Streptomyces coelicolor AAN68894<541>AAN68895 Pseudomonas putida COG0621<>COG1601 - 2 - 2-methylthioadenine synthetase ** Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain Q97W60<46>IF2B_SULSO Sulfolobus solfataricus Q9YBR9<93>IF2B_AERPE Aeropyrum pernix COG0625<>COG1960 - 2 - Glutathione S-transferase ** Acyl-CoA dehydrogenases Q9A3W4<105>Q9A3W3 Caulobacter crescentus AAN67512<391>AAN67513 Pseudomonas putida COG0628<>COG0681 - 2 - Predicted permease ** Signal peptidase I Q8RDJ7<403>Q8RDJ6 Thermoanaerobacter tengcongensis BAC19444<99>BAC19445 Corynebacterium efficiens COG0657<>COG1454 - 2 - Esterase/lipase ** Alcohol dehydrogenase, class IV Q8TMM7<511>Q8TMM6 Methanosarcina acetivorans Q8XYI7<30>Q8XYI6 Ralstonia solanacearum COG0659<>COG0789 - 2 - Sulfate permease and related transporters (MFS superfamily) ** Predicted transcriptional regulators BAC19010<49>BAC19011 Corynebacterium efficiens Q9X8E8<423>Q9X8E9 Streptomyces coelicolor COG0664<>COG4539 - 2 - cAMP-binding proteins Q9I6L5<76>Q9I6L4 Pseudomonas aeruginosa Q8XRM6<137>Q8XRM5 Ralstonia solanacearum COG0668<>NOG06361 - 2 - Small-conductance mechanosensitive channel ** non supervised orthologous group Q8R6L9<152>Q8R6L8 Thermoanaerobacter tengcongensis Q97CX0<138>Q97CW9 Clostridium acetobutylicum COG0693<>COG2771 - 2 - Putative intracellular protease/amidase ** DNA-binding HTH domain-containing proteins Q8ZSI9<89>Q8ZSI8 Nostoc sp PCC 7120 HCHA_PSEAE<172>Q9I4J9 Pseudomonas aeruginosa COG0698<>COG1113 - 2 - Ribose 5-phosphate isomerase RpiB ** Gamma-aminobutyrate permease and related permeases Q97L40<250>Q97L39 Clostridium acetobutylicum Q9L206<215>Q9L205 Streptomyces coelicolor COG0721<>NOG06574 - 2 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit ** non supervised orthologous group GATC_MYCLE<137>Q9CBR7 Mycobacterium leprae GATC_MYCTU<19>O53260 Mycobacterium tuberculosis CDC1551 GATC_MYCTU<85>O53260 Mycobacterium tuberculosis H37Rv Q8NR19<223>Q8NR18 Corynebacterium glutamicum COG0730<>COG2207 - 2 - Predicted permeases ** AraC-type DNA-binding domain-containing proteins Q93JA1<40>Q93JA0 Streptomyces coelicolor Q9I5E8<107>Q9I5E7 Pseudomonas aeruginosa COG0739<>COG3935 - 2 - Membrane proteins related to metalloendopeptidases ** Putative primosome component and related proteins Q8R6U3<188>Q8R6U2 Thermoanaerobacter tengcongensis Q8XH74<231>Q8XH73 Clostridium perfringens COG0745<>COG1131 - 2 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** ABC-type multidrug transport system, ATPase component Q97MB0<172>Q97MA9 Clostridium acetobutylicum BAC08881<202>BAC08882 Synechococcus elongatus COG0789<>COG1062 - 2 - Predicted transcriptional regulators ** Zn-dependent alcohol dehydrogenases, class III Q9JR70<121>Q9JRB0 Neisseria meningitidis B Q9JR70<121>Q9JRB0 Neisseria meningitidis A ADH3_HAEIN<123>Y186_HAEIN Haemophilus influenzae COG1028<>COG3284 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Transcriptional activator of acetoin/glycerol metabolism CAD55431<314>Q9S2E4 Streptomyces coelicolor Q9HWN4<332>Q9HWN3 Pseudomonas aeruginosa COG1028<>COG4948 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Q972M4<155>Q972M3 Sulfolobus tokodaii Q9RZP3<221>Q9RZP2 Deinococcus radiodurans COG1048<>NOG11389 - 2 - Aconitase A ** non supervised orthologous group O53166<158>O53167 Mycobacterium tuberculosis CDC1551 O53166<158>O53167 Mycobacterium tuberculosis H37Rv Q8NQ99<354>Q8NQ98 Corynebacterium glutamicum Q9CBL4<283>Q9CBL3 Mycobacterium leprae COG1061<>COG3372 - 2 - DNA or RNA helicases of superfamily II ** Uncharacterized conserved protein Q970I2<38>Q970I1 Sulfolobus tokodaii Q8TZT1<51>Q8TZT0 Pyrococcus furiosus Q9UYC4<50>Q9UYC3 Pyrococcus abyssi O58176<40>O58175 Pyrococcus horikoshii COG1108<>COG1121 - 2 - ABC-type Mn2+/Zn2+ transport systems, permease components ** ABC-type Mn/Zn transport systems, ATPase component Q8NUB1<30>Q8NUB0 Corynebacterium glutamicum Q9RJF9<16>Q9RJF8 Streptomyces coelicolor COG1132<>COG1846 - 2 - ABC-type multidrug transport system, ATPase and permease components ** Transcriptional regulators Q9EWY2<146>Q9EWY1 Streptomyces coelicolor Q8XN13<325>Q8XN12 Clostridium perfringens COG1175<>COG1653 - 2 - ABC-type sugar transport systems, permease components ** ABC-type sugar transport system, periplasmic component Q97UZ1<192>Q97UZ0 Sulfolobus solfataricus Q9WZ64<95>Q9WZ65 Thermotoga maritima COG1194<>NOG08688 - 2 - A/G-specific DNA glycosylase ** non supervised orthologous group BAC19336<656>BAC19338 Corynebacterium efficiens Q9CBJ2<779>Q9CBJ0 Mycobacterium leprae O53572<707>O53574 Mycobacterium tuberculosis CDC1551 O53572<731>O53574 Mycobacterium tuberculosis H37Rv COG1225<>COG2897 - 2 - Peroxiredoxin ** Rhodanese-related sulfurtransferase Q8ZUL0<208>Q8ZUK9 Pyrobaculum aerophilum Q96ZQ0<105>Q96ZP9 Sulfolobus tokodaii COG1309<>COG4757 - 2 - Transcriptional regulator ** Predicted alpha/beta hydrolase Q9I454<112>Q9I453 Pseudomonas aeruginosa Q8XRN6<78>Q8XRN5 Ralstonia solanacearum COG1335<>COG2020 - 2 - Amidases related to nicotinamidase ** Putative protein-S-isoprenylcysteine methyltransferase Q8KBV5<78>Q8KBV4 Chlorobium tepidum Q8PVQ5<429>Q8PVQ4 Methanosarcina mazei COG1373<>COG1602 - 2 - Predicted ATPase (AAA+ superfamily) ** Uncharacterized conserved protein Q973A4<726>Q973A3 Sulfolobus tokodaii Q8ZXI7<243>Q8ZXI6 Pyrobaculum aerophilum COG1414<>COG1629 - 2 - Transcriptional regulator ** Outer membrane receptor proteins, mostly Fe transport Q9A7B5<170>Q9A7B3 Caulobacter crescentus Q9HWM5<256>Q9HWM4 Pseudomonas aeruginosa COG1459<>COG4969 - 2 - Type II secretory pathway, component PulF ** Tfp pilus assembly protein, major pilin PilA Q9PAI0<172>Q9PAH9 Xylella fastidiosa AAN66258<217>AAN66259 Pseudomonas putida Q8P671<327>Q8P670 Xanthomonas campestris Q8PHL0<357>Q8PHK9 Xanthomonas axonopodis COG1494<>NOG08651 - 2 - Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins ** non supervised orthologous group Q8NRM9<235>Q8NRM8 Corynebacterium glutamicum O53447<251>O53448 Mycobacterium tuberculosis CDC1551 O53447<101>O53448 Mycobacterium tuberculosis H37Rv Q9X787<80>Q9CBH9 Mycobacterium leprae COG1522<>COG1878 - 2 - Transcriptional regulators ** Predicted metal-dependent hydrolase Q9I234<133>Q9I233 Pseudomonas aeruginosa Q8Y1D0<160>Q8Y1C9 Ralstonia solanacearum COG1585<>NOG09974 - 2 - Membrane protein implicated in regulation of membrane protease activity ** non supervised orthologous group BAC18465<955>BAC18467 Corynebacterium efficiens Q9CBM4<58>YE86_MYCLE Mycobacterium leprae YE86_MYCTU<58>P71767 Mycobacterium tuberculosis CDC1551 YE86_MYCTU<16>P71767 Mycobacterium tuberculosis H37Rv COG1788<>COG1846 - 2 - Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit ** Transcriptional regulators Q9XAM7<210>Q9XAM6 Streptomyces coelicolor Q97Z53<91>Q97Z52 Sulfolobus solfataricus COG2165<>NOG20238 - 2 - Type II secretory pathway, pseudopilin PulG ** non supervised orthologous group Q9I5P7<147>Q9I5P6 Pseudomonas aeruginosa Q8XUT0<173>Q8XUS9 Ralstonia solanacearum COG3079<>NOG07340 - 2 - Uncharacterized protein conserved in bacteria ** non supervised orthologous group YK10_XYLFA<193>Q9PBX4 Xylella fastidiosa YGFB_PSEAE<87>Q9HTW4 Pseudomonas aeruginosa Q8P5S6<236>Q8P5S5 Xanthomonas campestris Q8PH54<236>Q8PH53 Xanthomonas axonopodis COG3547<>COG4584 - 2 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives BAC18046<179>BAC18047 Corynebacterium efficiens O69923<132>O69924 Streptomyces coelicolor COG1309<>COG1566 - 2 - Transcriptional regulator ** Multidrug resistance efflux pump Q8U7H2<160>Q8U7H1 Agrobacterium tumefaciens Wash Q8YAY4<125>Q8YAY3 Brucella melitensis Q98D84<129>Q98D83 Mesorhizobium loti AAO05574<141>AAO05575 Staphylococcus epidermidis Q9F0Z0<121>Q99RS1 Staphylococcus aureus Mu50 Q9F0Z0<121>Q99RS1 Staphylococcus aureus N315 Q8U7H1<79>Q8U7H2 Agrobacterium tumefaciens Cereon Q9F0Z0<121>Q8NV49 Staphylococcus aureus MW2 BAC51523<114>BAC51524 Bradyrhizobium japonicum BAC51887<200>BAC51888 Bradyrhizobium japonicum Q92LW4<306>Q92LW3 Sinorhizobium meliloti COG0251<>COG2964 - 2 - Putative translation initiation inhibitor, yjgF family ** Uncharacterized protein conserved in bacteria Q9A1R1<174>Q9A1R0 Streptococcus pyogenes M1 Q9A1R1<174>Q9A1R0 Streptococcus pyogenes M18 Q9PMR3<168>Q9PMR2 Campylobacter jejuni Q9A1R1<174>Q9A1R0 Streptococcus pyogenes M3 COG0596<>COG1959 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Predicted transcriptional regulator Q8KF08<150>Q8KF07 Chlorobium tepidum Q8U9R2<4>Q8UEE7 Agrobacterium tumefaciens Cereon Q8UEE7<175>Q8U9R2 Agrobacterium tumefaciens Wash Q8UEE7<31>Q8UEE6 Agrobacterium tumefaciens Wash COG0644<>COG1573 - 2 - Dehydrogenases (flavoproteins) ** Uracil-DNA glycosylase Q8YG42<389>Q8YG41 Brucella melitensis Q9A8M0<151>Q9A8L9 Caulobacter crescentus AAN29549<389>AAN29550 Brucella suis BAC47788<136>BAC47789 Bradyrhizobium japonicum COG0726<>COG2351 - 2 - Predicted xylanase/chitin deacetylase ** Transthyretin-like protein Q9I3J6<373>YF18_PSEAE Pseudomonas aeruginosa AAN29294<268>AAN29295 Brucella suis Q98CI8<184>YFD3_RHILO Mesorhizobium loti Q92VC0<168>YII9_RHIME Sinorhizobium meliloti AAN69865<400>AAN69866 Pseudomonas putida COG0787<>COG1522 - 2 - Alanine racemase ** Transcriptional regulators ALR_BRUME<241>Q8YD02 Brucella melitensis Q8UAS6<128>ALR2_AGRT5 Agrobacterium tumefaciens Wash AAN34094<250>AAN34095 Brucella suis Q9JYC5<325>ALR_NEIMB Neisseria meningitidis B Q9JTA7<325>ALR_NEIMA Neisseria meningitidis A COG1064<>COG2207 - 2 - Zn-dependent alcohol dehydrogenases ** AraC-type DNA-binding domain-containing proteins Q9I1J9<209>Q9I1J8 Pseudomonas aeruginosa Q92MD4<222>Q92MD3 Sinorhizobium meliloti Q8UDU8<190>Q8UDU7 Agrobacterium tumefaciens Wash Q8UDU8<511>Q8UDU7 Agrobacterium tumefaciens Cereon AAN68037<182>AAN68038 Pseudomonas putida COG1309<>COG2080 - 2 - Transcriptional regulator ** Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs BAC47481<223>BAC47482 Bradyrhizobium japonicum Q98JI8<315>Q98JI7 Mesorhizobium loti Q9EWZ2<189>Q9EWZ1 Streptomyces coelicolor Q98FC6<125>Q98FC5 Mesorhizobium loti COG1609<>COG3538 - 2 - Transcriptional regulators ** Uncharacterized conserved protein Q99YP7<106>Q99YP6 Streptococcus pyogenes M1 Q8P021<106>Q8P020 Streptococcus pyogenes M18 Q8K6L1<313>Q8K6L0 Streptococcus pyogenes M3 Q9CFH7<239>Q9CFH6 Lactococcus lactis COG0181<>COG3072 - 2 - Porphobilinogen deaminase ** Adenylate cyclase HEM3_ECO57<367>Q8XAP1 Escherichia coli EDL933 HEM3_YERPE<326>CYAA_YERPE Yersinia pestis KIM AAN83157<366>AAN83158 Escherichia coli O6 HEM3_SALTY<362>CYAA_SALTY Salmonella typhimurium LT2 AAN45314<366>AAN45315 Shigella flexneri AAO09598<364>AAO09599 Vibrio vulnificus HEM3_ECOLI<366>CYAA_ECOLI Escherichia coli K12 HEM3_ECO57<366>Q8XAP1 Escherichia coli O157 CYAA_SALTY<377>HEM3_SALTY Salmonella typhi CT18 CYAA_YERPE<494>HEM3_YERPE Yersinia pestis CO92 AAN57281<202>AAN57282 Shewanella oneidensis CYAA_PASMU<143>HEM3_PASMU Pasteurella multocida COG0391<>COG2896 - 2 - Uncharacterized conserved protein ** Molybdenum cofactor biosynthesis enzyme YBHK_ECO57<397>MOAA_ECOL6 Escherichia coli EDL933 AAN79334<256>MOAA_ECOL6 Escherichia coli O6 YBHK_SALTI<397>MOAA_SALTY Salmonella typhi CT18 YBHK_SALTY<397>MOAA_SALTY Salmonella typhimurium LT2 AAN42365<256>AAN42366 Shigella flexneri YB58_YERPE<532>MOAA_YERPE Yersinia pestis CO92 YA23_VIBCH<291>MOAA_VIBCH Vibrio cholerae YBHK_ECOLI<397>MOAA_ECOLI Escherichia coli K12 YBHK_ECO57<397>MOAA_ECOL6 Escherichia coli O157 MOAA_YERPE<487>YB58_YERPE Yersinia pestis KIM AAO11411<316>AAO11412 Vibrio vulnificus MOAA_PASMU<374>Y626_PASMU Pasteurella multocida COG0473<>COG0583 - 2 - Isocitrate/isopropylmalate dehydrogenase ** Transcriptional regulator Q8XR65<115>Q8XR64 Ralstonia solanacearum Q8ZDR0<91>Q8ZDQ9 Yersinia pestis CO92 Q8XDS5<82>Q8XDS4 Escherichia coli EDL933 Q8ZDQ9<91>AAM85261 Yersinia pestis KIM YEAT_ECOLI<82>TTUC_ECOLI Escherichia coli K12 Q8XDS5<82>Q8XDS4 Escherichia coli O157 COG0621<>COG0654 - 2 - 2-methylthioadenine synthetase ** 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases YLEA_ECOLI<146>Q8XBK0 Escherichia coli EDL933 AAM84772<128>Q8ZDE7 Yersinia pestis KIM YLEA_ECOLI<125>AAN79221 Escherichia coli O6 Q8Z8G5<102>Q8Z8G4 Salmonella typhi CT18 Q9RCI2<144>Q8ZQY2 Salmonella typhimurium LT2 Q8ZDE8<242>Q8ZDE7 Yersinia pestis CO92 Q9KTE0<224>Q9KTD9 Vibrio cholerae YA01_PASMU<146>Q9CM42 Pasteurella multocida YLEA_ECOLI<146>UBIF_ECOLI Escherichia coli K12 YLEA_ECOLI<146>Q8XBK0 Escherichia coli O157 AAN42257<140>AAN42258 Shigella flexneri AAO08799<235>AAO08800 Vibrio vulnificus COG1414<>COG2055 - 2 - Transcriptional regulator ** Malate/L-lactate dehydrogenases AAN82831<201>AAN82832 Escherichia coli O6 Q8ZL84<230>Q8ZL83 Salmonella typhimurium LT2 AAN45066<200>AAN45067 Shigella flexneri YIAJ_ECOLI<201>YIAK_ECOLI Escherichia coli K12 Q8Z2C5<230>Q8Z2C4 Salmonella typhi CT18 YIAK_HAEIN<176>YIAJ_HAEIN Haemophilus influenzae YC56_PASMU<217>Q9CLH4 Pasteurella multocida COG1937<>COG2215 - 2 - Uncharacterized protein conserved in bacteria ** ABC-type uncharacterized transport system, permease component YOHL_ECOLI<121>Q8X3U5 Escherichia coli EDL933 YOHL_ECOLI<121>AAN81089 Escherichia coli O6 Q8XFV2<122>Q8ZM94 Salmonella typhimurium LT2 YOHL_ECOLI<121>YOHM_ECOLI Escherichia coli K12 YOHL_ECOLI<121>Q8X369 Escherichia coli O157 Q8XSC6<102>Q8XSC5 Ralstonia solanacearum COG0488<>COG2344 - 2 - ATPase components of ABC transporters with duplicated ATPase domains ** AT-rich DNA-binding protein BAC12607<147>BAC12608 Oceanobacillus iheyhensis Q9KFD1<163>Q9Z9P6 Bacillus halodurans AAO05246<348>AAO05247 Staphylococcus epidermidis Q97FM3<562>Q97FM2 Clostridium acetobutylicum Q99SK6<253>Q99SK5 Staphylococcus aureus Mu50 Q99SK6<253>Q99SK5 Staphylococcus aureus N315 Q929U6<311>Q8Y5I9 Listeria monocytogenes Q929U6<311>Q929U5 Listeria innocua Q99SK6<253>Q8NVJ7 Staphylococcus aureus MW2 COG1609<>COG1879 - 2 - Transcriptional regulators ** ABC-type sugar transport system, periplasmic component Q8XKQ4<218>Q8XKQ3 Clostridium perfringens Q8U6R4<240>Q8U6R3 Agrobacterium tumefaciens Wash Q98CX1<683>Q98CX0 Mesorhizobium loti Q92W80<274>Q92W79 Sinorhizobium meliloti Q8U6R3<240>Q8U6R4 Agrobacterium tumefaciens Cereon Q98LI9<179>Q98LI8 Mesorhizobium loti Q926G7<224>Q92V12 Sinorhizobium meliloti COG0003<>NOG08630 - 2 - Oxyanion-translocating ATPase ** non supervised orthologous group Q9XA37<153>Q9XA36 Streptomyces coelicolor Q8VIV6<85>Y0H9_MYCTU Mycobacterium tuberculosis CDC1551 COG0052<>COG0739 - 2 - Ribosomal protein S2 ** Membrane proteins related to metalloendopeptidases BAC18725<368>BAC18726 Corynebacterium efficiens RS2_CORGL<371>Q8NP00 Corynebacterium glutamicum RS2_MYCTU<284>YS91_MYCTU Mycobacterium tuberculosis H37Rv COG0057<>COG0229 - 2 - Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase ** Conserved domain frequently associated with peptide methionine sulfoxide reductase G3P1_SALTY<312>MSRB_SALTY Salmonella typhimurium LT2 AAN43042<333>AAN43043 Shigella flexneri Q8ZEK8<339>MSRB_YERPE Yersinia pestis CO92 MSRB_ECOLI<342>G3P1_ECOLI Escherichia coli EDL933 MSRB_YERPE<282>Q8ZEK8 Yersinia pestis KIM MSRB_ECOLI<303>G3P1_ECOLI Escherichia coli O6 MSRB_SALTY<312>G3P1_SALTY Salmonella typhi CT18 AAO11459<337>AAO11460 Vibrio vulnificus MSRB_PASMU<248>Q9CMB0 Pasteurella multocida MSRB_ECOLI<342>G3P1_ECOLI Escherichia coli K12 MSRB_ECOLI<342>G3P1_ECOLI Escherichia coli O157 COG0121<>COG2379 - 2 - Predicted glutamine amidotransferase ** Putative glycerate kinase Q8Y251<1261>Q8Y250 Ralstonia solanacearum Q8U4Q5<43>Q8U4Q4 Pyrococcus furiosus COG0151<>COG0537 - 2 - Phosphoribosylamine-glycine ligase ** Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases BAC19300<616>BAC19302 Corynebacterium efficiens PUR2_CORGL<160>Q8NMH2 Corynebacterium glutamicum PUR2_MYCLE<1841>YHI1_MYCLE Mycobacterium leprae COG0158<>COG0773 - 2 - Fructose-1,6-bisphosphatase ** UDP-N-acetylmuramate-alanine ligase Q8XCF0<176>Q8XEI2 Escherichia coli EDL933 AAM84252<66>Q8ZBA0 Yersinia pestis KIM Q8Z146<175>Q8Z145 Salmonella typhi CT18 Q8ZK67<175>Q8ZK66 Salmonella typhimurium LT2 F16P_ECOLI<176>MPL_ECOLI Escherichia coli K12 Q8XCF0<176>Q8XEI2 Escherichia coli O157 AAN45675<113>AAN45676 Shigella flexneri Q8ZBA0<171>Q8ZB99 Yersinia pestis CO92 Q9KP37<306>Q9KP35 Vibrio cholerae AAO09216<249>AAO09217 Vibrio vulnificus Q9CMA5<146>Q9CMA4 Pasteurella multocida COG0174<>NOG07399 - 2 - Glutamine synthetase ** non supervised orthologous group BAC18913<284>BAC18914 Corynebacterium efficiens Q8NNI7<281>O32354 Corynebacterium glutamicum Q8VJP3<125>GLN1_MYCTU Mycobacterium tuberculosis CDC1551 COG0210<>COG0695 - 2 - Superfamily I DNA and RNA helicases ** Glutaredoxin and related proteins UVRD_MYCTU<124>Q8VJ51 Mycobacterium tuberculosis CDC1551 Q9FCK1<45>Q9FCK0 Streptomyces coelicolor COG0210<>COG1605 - 2 - Superfamily I DNA and RNA helicases ** Chorismate mutase BAC17739<90>BAC17740 Corynebacterium efficiens Q8NS29<63>Q8NS28 Corynebacterium glutamicum Y948_MYCTU<297>PCRA_MYCTU Mycobacterium tuberculosis H37Rv COG0237<>COG0516 - 2 - Dephospho-CoA kinase ** IMP dehydrogenase/GMP reductase COAE_BUCAI<56>GUAC_BUCAI Buchnera aphidicola APS COAE_ECOLI<225>GUAC_ECO57 Escherichia coli EDL933 COAE_YERPE<296>GUAC_YERPE Yersinia pestis KIM AAN78621<225>AAN78622 Escherichia coli O6 COAE_SALTY<226>GUAC_SALTI Salmonella typhi CT18 COAE_SALTY<226>GUAC_SALTY Salmonella typhimurium LT2 AAN41765<225>AAN41766 Shigella flexneri COAE_ECOLI<225>GUAC_ECOLI Escherichia coli K12 COAE_ECOLI<225>GUAC_ECO57 Escherichia coli O157 COAE_BUCAP<150>GUAC_BUCAP Buchnera aphidicola Schiz COG0268<>NOG04272 - 2 - Ribosomal protein S20 ** non supervised orthologous group RS20_CLOAB<184>Q97JJ9 Clostridium acetobutylicum RS20_BACHD<282>Q9KD78 Bacillus halodurans GPR_BACSU<204>RS20_BACSU Bacillus subtilis Q8XIS3<196>RS20_CLOPE Clostridium perfringens BAC13931<217>BAC13932 Oceanobacillus iheyhensis COG0277<>COG0578 - 2 - FAD/FMN-containing dehydrogenases ** Glycerol-3-phosphate dehydrogenase AAN49460<174>AAN49461 Leptospira interrogans GLPD_MYCTU<617>Q8VJN8 Mycobacterium tuberculosis CDC1551 COG0277<>COG1309 - 2 - FAD/FMN-containing dehydrogenases ** Transcriptional regulator Q9RJ97<78>Q9RJ96 Streptomyces coelicolor YM50_MYCTU<121>O53525 Mycobacterium tuberculosis H37Rv COG0316<>NOG07398 - 2 - Uncharacterized conserved protein ** non supervised orthologous group BAC18899<113>BAC18900 Corynebacterium efficiens Q9LCB6<273>Q8NNK0 Corynebacterium glutamicum YM06_MYCLE<1649>Q9CCF5 Mycobacterium leprae COG0431<>COG1309 - 2 - Predicted flavoprotein ** Transcriptional regulator P95105<92>P95103 Mycobacterium tuberculosis H37Rv Q9RD23<140>Q9RD22 Streptomyces coelicolor COG0596<>COG2963 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Transposase and inactivated derivatives O06338<97>YIA4_MYCTU Mycobacterium tuberculosis H37Rv O86607<314>O86608 Streptomyces coelicolor COG0611<>NOG08661 - 2 - Thiamine monophosphate kinase ** non supervised orthologous group Q9CBS2<184>Q9CBS1 Mycobacterium leprae BAC18243<169>BAC18245 Corynebacterium efficiens Q8NQV1<62>Q8NQV0 Corynebacterium glutamicum COG0743<>NOG08671 - 2 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase ** non supervised orthologous group BAC18715<35>BAC18716 Corynebacterium efficiens DXR_CORGL<244>Q8NP09 Corynebacterium glutamicum DXR_MYCLE<155>YS76_MYCLE Mycobacterium leprae COG1028<>COG1565 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Uncharacterized conserved protein Q9PDC2<75>Q9PDC1 Xylella fastidiosa Q8Y326<18>Q8Y325 Ralstonia solanacearum COG1100<>COG1896 - 2 - GTPase SAR1 and related small G proteins ** Predicted hydrolases of HD superfamily Q8TZA0<203>Q8TZ99 Methanopyrus kandleri Q8U3R1<381>Q8U3Q9 Pyrococcus furiosus COG1215<>COG1309 - 2 - Glycosyltransferases, probably involved in cell wall biogenesis ** Transcriptional regulator Q9A906<255>Q9A905 Caulobacter crescentus Q9RQQ0<164>Q99QX3 Staphylococcus aureus Mu50 Q9RQQ0<164>Q99QX3 Staphylococcus aureus N315 Q9RQQ0<164>Q8NUI7 Staphylococcus aureus MW2 COG1278<>NOG06569 - 2 - Cold shock proteins ** non supervised orthologous group O33052<2324>O33049 Mycobacterium leprae BAC17704<520>BAC17705 Corynebacterium efficiens Q8NS60<539>Q8NS59 Corynebacterium glutamicum COG1309<>COG2050 - 2 - Transcriptional regulator ** Uncharacterized protein, possibly involved in aromatic compounds catabolism Q9A7Q7<65>Q9A7Q6 Caulobacter crescentus O06178<1183>O08377 Mycobacterium tuberculosis CDC1551 COG1349<>COG2084 - 2 - Transcriptional regulators of sugar metabolism ** 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases AAN81745<166>AAN81746 Escherichia coli O6 AAN83253<908>AAN83255 Escherichia coli O6 YGBI_HAEIN<159>YGBJ_HAEIN Haemophilus influenzae YGBI_ECOLI<166>YGBJ_ECOLI Escherichia coli K12 Q8ZMG4<197>Q8ZMG3 Salmonella typhimurium LT2 Q9CL76<215>Q9CL75 Pasteurella multocida COG1485<>COG1985 - 2 - Predicted ATPase ** Pyrimidine reductase, riboflavin biosynthesis Q9X824<581>Q9X825 Streptomyces coelicolor P71967<56>P71968 Mycobacterium tuberculosis CDC1551 COG1488<>NOG08685 - 2 - Nicotinic acid phosphoribosyltransferase ** non supervised orthologous group YD30_MYCTU<184>YD32_MYCTU Mycobacterium tuberculosis H37Rv Q9S2G6<562>Q9S2G4 Streptomyces coelicolor COG1737<>COG3010 - 2 - Transcriptional regulators ** Putative N-acetylmannosamine-6-phosphate epimerase Q99WQ9<140>Q99WQ8 Staphylococcus aureus Mu50 Q99WQ9<140>Q99WQ8 Staphylococcus aureus N315 Q8NYC5<141>Q8NYC4 Staphylococcus aureus MW2 Q9CGC2<259>Q9CGC1 Lactococcus lactis COG1846<>COG2388 - 2 - Transcriptional regulators ** Predicted acetyltransferase Q99RB5<226>Q99RB4 Staphylococcus aureus Mu50 Q99RB5<226>Q99RB4 Staphylococcus aureus N315 Q9AK01<152>Q9AK00 Streptomyces coelicolor Q99RB5<226>Q8NUT4 Staphylococcus aureus MW2 COG1974<>COG2937 - 2 - SOS-response transcriptional repressors (RecA-mediated autopeptidases) ** Glycerol-3-phosphate O-acyltransferase LEXA_VIBCH<311>PLSB_VIBCH Vibrio cholerae LEXA_PASMU<459>PLSB_PASMU Pasteurella multocida PLSB_YERPE<495>AAM84160 Yersinia pestis KIM AAO09636<318>AAO09637 Vibrio vulnificus AAN57562<162>AAN57563 Shewanella oneidensis PLSB_HAEIN<249>LEXA_HAEIN Haemophilus influenzae COG2114<>COG2200 - 2 - Adenylate cyclase, family 3 (some proteins contain HAMP domain) ** EAL domain AAN48383<182>AAN48384 Leptospira interrogans YD57_MYCTU<396>Q11028 Mycobacterium tuberculosis H37Rv COG2609<>NOG06580 - 2 - Pyruvate dehydrogenase complex, dehydrogenase (E1) component ** non supervised orthologous group O69479<913>Q9CBS8 Mycobacterium leprae Q9KY20<380>Q9KY19 Streptomyces coelicolor COG4675<>NOG04823 - 2 - Microcystin-dependent protein ** non supervised orthologous group Q8Y366<504>Q8Y365 Ralstonia solanacearum Q8P377<248>Q8P376 Xanthomonas campestris NOG05521<>NOG09501 - 2 - non supervised orthologous group ** non supervised orthologous group BAC18884<128>BAC18885 Corynebacterium efficiens Q8NNL4<159>Q8NNL3 Corynebacterium glutamicum O69571<1017>O69570 Mycobacterium leprae NOG06566<>NOG08645 - 2 - non supervised orthologous group ** non supervised orthologous group BAC17593<565>BAC17594 Corynebacterium efficiens Q8RQC6<526>Q8NSB0 Corynebacterium glutamicum Q9CCH7<1287>Q9CCH6 Mycobacterium leprae COG0010<>COG0583 - 2 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family ** Transcriptional regulator Q9I3S3<207>Q9I3S2 Pseudomonas aeruginosa Q92MV8<217>Q92MV7 Sinorhizobium meliloti AAN70096<213>AAN70097 Pseudomonas putida Q98D23<276>Q98D22 Mesorhizobium loti COG0115<>COG1846 - 2 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ** Transcriptional regulators Q9A4A8<81>Q9A4A7 Caulobacter crescentus BAC52724<296>BAC52725 Bradyrhizobium japonicum Q98HX8<307>Q98HX7 Mesorhizobium loti COG0142<>COG4123 - 2 - Geranylgeranyl pyrophosphate synthase ** Predicted O-methyltransferase Q9A6I1<93>Q9A6I0 Caulobacter crescentus Q8UHP6<378>Q8UHP4 Agrobacterium tumefaciens Cereon Q986C3<88>Q986C2 Mesorhizobium loti COG0160<>COG0583 - 2 - 4-aminobutyrate aminotransferase and related aminotransferases ** Transcriptional regulator Q8UK22<102>Q8UK21 Agrobacterium tumefaciens Wash Q8UK22<51>Q8UK21 Agrobacterium tumefaciens Cereon Q9KYZ2<87>Q9KYZ1 Streptomyces coelicolor COG0219<>COG0723 - 2 - Predicted rRNA methylase (SpoU class) ** Rieske Fe-S protein Q9AAX1<202>Q9AAX0 Caulobacter crescentus BAC47749<278>BAC47750 Bradyrhizobium japonicum AAN30453<4289>AAN30454 Brucella suis COG0259<>COG2214 - 2 - Pyridoxamine-phosphate oxidase ** DnaJ-class molecular chaperone BAC47889<632>BAC47891 Bradyrhizobium japonicum Q986A0<603>Q985Z8 Mesorhizobium loti Q9A9Q7<106>Q9A9Q6 Caulobacter crescentus COG0300<>COG1309 - 2 - Short-chain dehydrogenases of various substrate specificities ** Transcriptional regulator Q9A5W0<525>Q9A5V8 Caulobacter crescentus Q8UJN3<111>Q8UJN2 Agrobacterium tumefaciens Wash Q8UJN3<18>Q8UJN2 Agrobacterium tumefaciens Cereon COG0346<>COG0454 - 2 - Lactoylglutathione lyase and related lyases ** Histone acetyltransferase HPA2 and related acetyltransferases Q8UCY5<165>Q8UCY4 Agrobacterium tumefaciens Wash Q8UCY5<117>Q8UCY4 Agrobacterium tumefaciens Cereon Q9K3Q7<84>Q9K3Q6 Streptomyces coelicolor COG0346<>COG1846 - 2 - Lactoylglutathione lyase and related lyases ** Transcriptional regulators Q9K3T3<1073>Q9K3T1 Streptomyces coelicolor BAC47595<121>BAC47596 Bradyrhizobium japonicum BAC48684<105>BAC48685 Bradyrhizobium japonicum COG0384<>COG0583 - 2 - Predicted epimerase, PhzC/PhzF homolog ** Transcriptional regulator Q8U680<118>Q8U679 Agrobacterium tumefaciens Wash Q9RJQ1<77>Q9RJQ0 Streptomyces coelicolor Q930V0<118>Q930U9 Sinorhizobium meliloti COG0438<>COG3206 - 2 - Glycosyltransferase ** Uncharacterized protein involved in exopolysaccharide biosynthesis BAC48626<279>BAC48627 Bradyrhizobium japonicum Q8YLS4<1145>Q8YLS3 Nostoc sp PCC 7120 BAC50237<202>BAC50238 Bradyrhizobium japonicum COG0454<>NOG06269 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** non supervised orthologous group Q9CJA2<152>Q9CJA1 Lactococcus lactis AAN59652<148>AAN59653 Streptococcus mutans AAN00836<327>AAN00837 Streptococcus agalactiae COG0477<>COG0500 - 2 - Permeases of the major facilitator superfamily ** SAM-dependent methyltransferases Q8UGJ7<159>Q8UGJ6 Agrobacterium tumefaciens Wash Q8UGJ7<135>Q8UGJ6 Agrobacterium tumefaciens Cereon Q8PUK3<1150>Q8PUK2 Methanosarcina mazei Q8TR38<1236>Q8TR37 Methanosarcina acetivorans COG0583<>COG1680 - 2 - Transcriptional regulator ** Beta-lactamase class C and other penicillin binding proteins Q8UBD8<18>Q8UBD9 Agrobacterium tumefaciens Cereon AMPR_PSEAE<149>AMPC_PSEAE Pseudomonas aeruginosa Q8UBD9<135>Q8UBD8 Agrobacterium tumefaciens Wash Q9I1G0<115>Q9I1F9 Pseudomonas aeruginosa COG0596<>COG2207 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** AraC-type DNA-binding domain-containing proteins Q98KT5<214>Q98KT4 Mesorhizobium loti Q9RK96<2>Q9RK95 Streptomyces coelicolor BAC49445<177>BAC49446 Bradyrhizobium japonicum COG0625<>COG1733 - 2 - Glutathione S-transferase ** Predicted transcriptional regulators Q8UKG2<182>Q8UKG1 Agrobacterium tumefaciens Wash Q8UKG2<86>Q8UKG1 Agrobacterium tumefaciens Cereon Q8Y174<164>Q8Y173 Ralstonia solanacearum COG0640<>COG3832 - 2 - Predicted transcriptional regulators ** Uncharacterized conserved protein AAN48290<33>AAN48291 Leptospira interrogans Q98F43<46>Q98F42 Mesorhizobium loti Q92R39<52>Q92KH6 Sinorhizobium meliloti COG0667<>COG2207 - 2 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) ** AraC-type DNA-binding domain-containing proteins Q8U6D9<196>Q8U6D8 Agrobacterium tumefaciens Wash Q8U6D8<196>Q8U6D9 Agrobacterium tumefaciens Cereon Q9X0A0<129>Q9X0A1 Thermotoga maritima COG0697<>COG1309 - 2 - Permeases of the drug/metabolite transporter (DMT) superfamily ** Transcriptional regulator Q8UGP3<62>Q8UGP2 Agrobacterium tumefaciens Wash Q8UGP3<62>Q8UGP2 Agrobacterium tumefaciens Cereon O86513<92>O86514 Streptomyces coelicolor COG0721<>COG0816 - 2 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit ** Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) GATC_CAUCR<180>Q9A5K8 Caulobacter crescentus Q8UFT1<1311>Q8UFS9 Agrobacterium tumefaciens Wash Q8UFT1<1161>Q8UFS9 Agrobacterium tumefaciens Cereon COG0745<>COG1126 - 2 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** ABC-type polar amino acid transport system, ATPase component Q93MY4<353>AAN59169 Streptococcus mutans O50495<303>O50496 Streptomyces coelicolor AAM99605<340>AAM99606 Streptococcus agalactiae COG1012<>COG1522 - 2 - NAD-dependent aldehyde dehydrogenases ** Transcriptional regulators Q8U6P5<122>Q8U6P4 Agrobacterium tumefaciens Wash Q8U6P4<146>Q8U6P5 Agrobacterium tumefaciens Cereon O86743<181>O86742 Streptomyces coelicolor COG1629<>COG2207 - 2 - Outer membrane receptor proteins, mostly Fe transport ** AraC-type DNA-binding domain-containing proteins Q8YTY3<467>Q8YTY2 Nostoc sp PCC 7120 Q8YDS1<566>Q8YDS0 Brucella melitensis RHRA_RHIME<169>RHTA_RHIME Sinorhizobium meliloti COG1686<>NOG09913 - 2 - D-alanyl-D-alanine carboxypeptidase ** non supervised orthologous group Q9A6D4<156>Q9A6D3 Caulobacter crescentus BAC50420<390>BAC50421 Bradyrhizobium japonicum Q98MA2<286>Q98MA1 Mesorhizobium loti COG1733<>COG2514 - 2 - Predicted transcriptional regulators ** Predicted ring-cleavage extradiol dioxygenase Q8NZ39<186>Q8NZ38 Streptococcus pyogenes M18 Q8K5K8<285>Q8K5K7 Streptococcus pyogenes M3 Q9Y8W7<210>Q9Y8W5 Aeropyrum pernix COG2207<>COG4954 - 2 - AraC-type DNA-binding domain-containing proteins ** Uncharacterized protein conserved in bacteria Q8UIQ4<95>Q8UIQ3 Agrobacterium tumefaciens Cereon Q9FCG3<50>Q9FCG2 Streptomyces coelicolor Q98CG6<52>Q98CG5 Mesorhizobium loti COG0583<>COG4221 - 2 - Transcriptional regulator ** Short-chain alcohol dehydrogenase of unknown specificity Q8X5E9<99>Q8X6K1 Escherichia coli EDL933 Q8U820<241>Q8U819 Agrobacterium tumefaciens Wash Q8UH29<253>Q8UH28 Agrobacterium tumefaciens Wash Q8UH29<28>Q8UH28 Agrobacterium tumefaciens Cereon Q92XI5<112>Q92XI4 Sinorhizobium meliloti AAN57113<179>AAN57114 Shewanella oneidensis Q8X5E9<249>Q8X6K1 Escherichia coli O157 Q8U819<277>Q8U820 Agrobacterium tumefaciens Cereon BAC48905<223>BAC48906 Bradyrhizobium japonicum Q9KKP5<148>Q9KKP4 Vibrio cholerae Q9F172<138>AAO08299 Vibrio vulnificus COG0174<>COG1217 - 2 - Glutamine synthetase ** Predicted membrane GTPase involved in stress response GLNA_ECOLI<373>TYPA_ECOL6 Escherichia coli EDL933 GLNA_ECOLI<373>TYPA_ECOL6 Escherichia coli O6 GLNA_SALTY<376>Q9F2E0 Salmonella typhimurium LT2 GLNA_ECOLI<373>TYPA_ECOL6 Shigella flexneri GLNA_ECOLI<373>TYPA_ECOLI Escherichia coli K12 GLNA_ECOLI<373>TYPA_ECOL6 Escherichia coli O157 Q8ZJR3<538>AAM87349 Yersinia pestis KIM Q9F2I6<376>GLNA_SALTY Salmonella typhi CT18 AAO09391<531>AAO09392 Vibrio vulnificus TYPA_HAEIN<231>GLNA_HAEIN Haemophilus influenzae COG0242<>COG0758 - 2 - N-formylmethionyl-tRNA deformylase ** Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DEF_YERPE<135>Q8ZJ78 Yersinia pestis KIM AAN65702<207>AAN65703 Pseudomonas putida DEF_SALTI<132>Q8Z1W8 Salmonella typhi CT18 DEF_YERPE<135>Q8ZJ78 Yersinia pestis CO92 Q8X8F4<130>DEF_ECOLI Escherichia coli EDL933 AAN82484<130>DEF_ECOLI Escherichia coli O6 Q8ZLM8<132>DEF_SALTY Salmonella typhimurium LT2 AAN44780<99>AAN44781 Shigella flexneri SMF_ECOLI<130>DEF_ECOLI Escherichia coli K12 Q8X8F4<130>DEF_ECOLI Escherichia coli O157 COG0333<>COG0572 - 2 - Ribosomal protein L32 ** Uridine kinase URK_UREPA<186>RL32_UREPA Ureaplasma parvum BAC09466<211>BAC09467 Synechococcus elongatus COG0373<>COG3017 - 2 - Glutamyl-tRNA reductase ** Outer membrane lipoprotein involved in outer membrane biogenesis BAC24492<349>BAC24493 Wigglesworthia brevipalpis HEM1_YERPE<189>LOLB_YERPE Yersinia pestis KIM HEM1_SALTY<314>LOLB_SALTI Salmonella typhi CT18 HEM1_SALTY<314>LOLB_SALTY Salmonella typhimurium LT2 HEM1_VIBCH<141>LOLB_VIBCH Vibrio cholerae AAO08790<187>AAO08791 Vibrio vulnificus AAN56811<255>AAN56812 Shewanella oneidensis LOLB_ECOLI<214>HEM1_ECOLI Escherichia coli EDL933 LOLB_ECOLI<16>AAN42826 Shigella flexneri LOLB_YERPE<306>HEM1_YERPE Yersinia pestis CO92 LOLB_ECOLI<214>HEM1_ECOLI Escherichia coli K12 LOLB_ECOLI<214>HEM1_ECOLI Escherichia coli O157 COG0425<>COG4783 - 2 - Predicted redox protein, regulator of disulfide bond formation ** Putative Zn-dependent protease, contains TPR repeats Q9KQ41<184>YL64_VIBCH Vibrio cholerae AAN55884<113>AAN55885 Shewanella oneidensis Q9I4W8<163>Q9I4W7 Pseudomonas aeruginosa AAN66856<123>AAN66857 Pseudomonas putida AAO10308<186>AAO10309 Vibrio vulnificus COG0583<>COG0678 - 2 - Transcriptional regulator ** Peroxiredoxin Q8ZA96<147>Q8ZA95 Yersinia pestis CO92 Q9KNU4<128>Q9KNU3 Vibrio cholerae OXYR_HAEIN<123>Y572_HAEIN Haemophilus influenzae Q9CL94<136>Q9CL93 Pasteurella multocida Q8ZA95<147>Q8ZA96 Yersinia pestis KIM COG0596<>COG3057 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Negative regulator of replication initiationR Q8X9H1<185>Q8X9G7 Escherichia coli EDL933 AAN79246<50>SEQA_ECOLI Escherichia coli O6 Q8Z8F2<185>Q8XGE6 Salmonella typhi CT18 Q8ZQX0<185>Q8XGE6 Salmonella typhimurium LT2 Q9CNS0<80>Q9CNR9 Pasteurella multocida YBFF_ECOLI<185>SEQA_ECOLI Escherichia coli K12 Q8X9H1<185>Q8X9G7 Escherichia coli O157 AAN42244<132>AAN42245 Shigella flexneri Q9KQA4<93>Q9KQA3 Vibrio cholerae AAO08708<93>AAO08709 Vibrio vulnificus COG0752<>COG2818 - 2 - Glycyl-tRNA synthetase, alpha subunit ** 3-methyladenine DNA glycosylase SYGA_YERPE<328>AAM87634 Yersinia pestis KIM SYGA_PSEAE<105>Q9I7B6 Pseudomonas aeruginosa AAN65695<84>AAN65696 Pseudomonas putida SYGA_YERPE<328>Q8Z9W5 Yersinia pestis CO92 AAN53102<118>AAN53103 Shewanella oneidensis COG1485<>COG3105 - 2 - Predicted ATPase ** Uncharacterized protein conserved in bacteria YHCM_ECOLI<188>YHCB_ECOLI Escherichia coli EDL933 BAC24287<154>BAC24288 Wigglesworthia brevipalpis AAM83729<212>Q8ZB59 Yersinia pestis KIM AAN82426<188>YHCB_ECOLI Escherichia coli O6 Q8Z3E8<187>Q8Z3E7 Salmonella typhi CT18 Q8ZLQ3<187>Q8ZLQ2 Salmonella typhimurium LT2 AAN44736<188>AAN44737 Shigella flexneri Q8ZB60<224>Q8ZB59 Yersinia pestis CO92 AAO09116<169>AAO09117 Vibrio vulnificus YHCM_ECOLI<188>YHCB_ECOLI Escherichia coli K12 YHCM_ECOLI<188>YHCB_ECOLI Escherichia coli O157 Q9KUF4<154>Q9KUF3 Vibrio cholerae COG0110<>COG0583 - 2 - Acetyltransferase (isoleucine patch superfamily) ** Transcriptional regulator Q9RKA1<114>Q9RKA0 Streptomyces coelicolor Q8Y9U0<118>Q8Y9T9 Listeria monocytogenes Q92EK9<118>Q92EK8 Listeria innocua COG0183<>COG3425 - 2 - Acetyl-CoA acetyltransferase ** 3-hydroxy-3-methylglutaryl CoA synthase Q9CFB0<309>Q9CFA9 Lactococcus lactis Q8Y782<150>Q8Y781 Listeria monocytogenes Q92BU1<150>Q92BU0 Listeria innocua COG0534<>COG1846 - 2 - Na+-driven multidrug efflux pump ** Transcriptional regulators Q8Y9C7<166>Q8Y9C6 Listeria monocytogenes Q92E47<167>Q92E46 Listeria innocua NORM_THEMA<109>Q9WZS3 Thermotoga maritima COG0614<>COG1120 - 2 - ABC-type Fe3+-hydroxamate transport system, periplasmic component ** ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Q8Y5U6<165>Q8Y5U5 Listeria monocytogenes Q92A49<166>Q92A48 Listeria innocua Y872_METJA<133>Y873_METJA Methanococcus jannaschii COG1272<>COG1307 - 2 - Predicted membrane protein, hemolysin III homolog ** Uncharacterized protein conserved in bacteria Q9CI69<181>Q9CI68 Lactococcus lactis Q8Y637<180>Q8Y636 Listeria monocytogenes Q92AE5<182>Q92AE4 Listeria innocua COG1472<>COG1653 - 2 - Beta-glucosidase-related glycosidases ** ABC-type sugar transport system, periplasmic component Q8Y6F8<428>Q8Y6F7 Listeria monocytogenes Q92AS9<429>Q92AS8 Listeria innocua Q9KYT0<250>Q9KYS9 Streptomyces coelicolor COG1609<>COG1940 - 2 - Transcriptional regulators ** Transcriptional regulator/sugar kinase Q8YAT2<202>Q8YAT1 Listeria monocytogenes Q92FS3<202>Q92FS2 Listeria innocua Q9K422<241>Q9K421 Streptomyces coelicolor COG1846<>COG2353 - 2 - Transcriptional regulators ** Uncharacterized conserved protein BAC18082<144>BAC18083 Corynebacterium efficiens Q8Y8U6<255>Q8Y8U5 Listeria monocytogenes Q92DM4<256>Q92DM3 Listeria innocua Q8NR83<279>Q8NR82 Corynebacterium glutamicum COG2060<>COG2205 - 2 - K+-transporting ATPase, A chain ** Osmosensitive K+ channel histidine kinase Q99SH9<272>Q99SH8 Staphylococcus aureus Mu50 Q99SH9<272>Q99SH8 Staphylococcus aureus N315 Q8NVI1<272>Q8NVI0 Staphylococcus aureus MW2 Q99QS9<304>ATKA_STAAM Staphylococcus aureus Mu50 Q99QS9<304>ATKA_STAAM Staphylococcus aureus N315 KDPD_MYCTU<293>ATKA_MYCTU Mycobacterium tuberculosis CDC1551 KDPD_MYCTU<326>ATKA_MYCTU Mycobacterium tuberculosis H37Rv COG0180<>COG1393 - 2 - Tryptophanyl-tRNA synthetase ** Arsenate reductase and related proteins, glutaredoxin family AAO04282<291>AAO04283 Staphylococcus epidermidis SYW_UREPA<125>Y176_UREPA Ureaplasma parvum SYW_STAAM<294>Q99V93 Staphylococcus aureus Mu50 SYW_STAAM<294>Q99V93 Staphylococcus aureus N315 SYW_STAAM<295>Q99V93 Staphylococcus aureus MW2 SYW_MYCGE<36>Y127_MYCGE Mycoplasma genitalium SYW_MYCPN<57>Y127_MYCPN Mycoplasma pneumoniae COG1263<>COG2188 - 2 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ** Transcriptional regulators Q8KST1<174>Q8KST2 Streptococcus mutans Q99XQ4<211>Q99XQ3 Streptococcus pyogenes M1 Q8XC06<290>Q8XC05 Escherichia coli EDL933 Q97NW9<185>Q97NW8 Streptococcus pneumoniae TIGR4 AAL00502<35>AAL00503 Streptococcus pneumoniae R6 Q8NZ40<211>Q99XQ3 Streptococcus pyogenes M18 Q8K5K9<211>Q99XQ3 Streptococcus pyogenes M3 PTIC_ECOLI<35>YIDP_ECOLI Escherichia coli K12 Q8XC06<35>Q8XC05 Escherichia coli O157 AAN45221<88>AAN45222 Shigella flexneri COG0115<>COG0354 - 2 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ** Predicted aminomethyltransferase related to GcvT Q8NMJ3<108>Q8NMJ2 Corynebacterium glutamicum O53825<65>Q8VKD6 Mycobacterium tuberculosis CDC1551 O53825<83>O53826 Mycobacterium tuberculosis H37Rv COG0189<>COG0456 - 2 - Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) ** Acetyltransferases AAN68564<95>AAN68565 Pseudomonas putida AAO10191<67>AAO10192 Vibrio vulnificus Q9I2G1<191>Q9I2G0 Pseudomonas aeruginosa Q9KPN4<205>Q9KPN3 Vibrio cholerae COG0196<>COG0268 - 2 - FAD synthase ** Ribosomal protein S20 RIBF_BUCAI<215>RS20_BUCAI Buchnera aphidicola APS BAC24441<160>BAC24442 Wigglesworthia brevipalpis Q8ZIM1<415>RS20_YERPE Yersinia pestis KIM RIBF_BUCAP<164>RS20_BUCAP Buchnera aphidicola Schiz AAN41686<329>RIBF_ECOLI Shigella flexneri COG0226<>COG1117 - 2 - ABC-type phosphate transport system, periplasmic component ** ABC-type phosphate transport system, ATPase component PST2_MYCTU<216>PSTB_MYCTU Mycobacterium tuberculosis CDC1551 PST2_MYCTU<216>PSTB_MYCTU Mycobacterium tuberculosis H37Rv Q97ZT9<146>Q97ZT8 Sulfolobus solfataricus COG0232<>NOG27175 - 2 - dGTP triphosphohydrolase ** non supervised orthologous group BAC18983<734>BAC18985 Corynebacterium efficiens DGT1_MYCTU<69>P95241 Mycobacterium tuberculosis CDC1551 DGT1_MYCTU<69>P95241 Mycobacterium tuberculosis H37Rv COG0271<>COG3056 - 2 - Stress-induced morphogen (activity unknown) ** Uncharacterized lipoprotein Q8ZC62<349>Q8ZC61 Yersinia pestis CO92 Q8XE62<170>Q8XE61 Escherichia coli EDL933 Q8ZC61<349>Q8ZC62 Yersinia pestis KIM Q8Z8V2<304>Q8XFC2 Salmonella typhi CT18 Q8ZRC1<250>Q8XFC2 Salmonella typhimurium LT2 AAN42034<113>AAN42035 Shigella flexneri YAJG_HAEIN<94>BOLA_HAEIN Haemophilus influenzae YAJG_ECOLI<170>BOLA_ECOLI Escherichia coli K12 Q8XE62<170>Q8XE61 Escherichia coli O157 COG0277<>COG2186 - 2 - FAD/FMN-containing dehydrogenases ** Transcriptional regulators GLCD_ECOLI<191>GLCC_ECOLI Escherichia coli O6 Q9HTK3<205>Q9HTK2 Pseudomonas aeruginosa GLCD_ECOLI<251>GLCC_ECOLI Escherichia coli K12 AAN69339<168>AAN69340 Pseudomonas putida COG0302<>COG0303 - 2 - GTP cyclohydrolase I ** Molybdopterin biosynthesis enzyme GCH1_VIBCH<41>Q9KLX4 Vibrio cholerae AAO07492<176>AAO07493 Vibrio vulnificus GCH1_HAEIN<138>MOEA_HAEIN Haemophilus influenzae GCH1_PASMU<243>Q9CMW0 Pasteurella multocida COG0340<>COG1268 - 2 - Biotin-(acetyl-CoA carboxylase) ligase ** Uncharacterized conserved protein Q8U0C3<96>Q8U0C2 Pyrococcus furiosus Q977Y8<167>Q97MI5 Clostridium acetobutylicum Q9V2B9<49>Q9V2B8 Pyrococcus abyssi COG0363<>COG1263 - 2 - 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase ** Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific NAGB_ECOLI<333>Q8X9H9 Escherichia coli EDL933 Q8ZDE1<399>Q8ZDE0 Yersinia pestis KIM Q8Z8G0<327>Q8Z8F9 Salmonella typhi CT18 Q8ZQX7<327>Q8ZQX6 Salmonella typhimurium LT2 Q8ZDE1<400>Q8ZDE0 Yersinia pestis CO92 Q9CMF4<308>Q9CMF3 Pasteurella multocida NAGB_ECOLI<333>PTAA_ECOLI Escherichia coli K12 NAGB_ECOLI<333>Q8X9H9 Escherichia coli O157 AAN42252<333>AAN42253 Shigella flexneri COG0436<>COG1169 - 2 - Aspartate/tyrosine/aromatic aminotransferase ** Isochorismate synthase Q9CPI6<170>MENF_PASMU Pasteurella multocida Q9KQM2<215>Q9KQM1 Vibrio cholerae AAO11489<232>AAO11490 Vibrio vulnificus MENF_HAEIN<136>YFBQ_HAEIN Haemophilus influenzae COG0483<>COG1940 - 2 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family ** Transcriptional regulator/sugar kinase Q8NPA5<16>Q8NPA4 Corynebacterium glutamicum SUHB_MYCTU<162>PPGK_MYCTU Mycobacterium tuberculosis CDC1551 SUHB_MYCTU<123>PPGK_MYCTU Mycobacterium tuberculosis H37Rv COG0494<>NOG06583 - 2 - NTP pyrophosphohydrolases including oxidative damage repair enzymes ** non supervised orthologous group Q8NM32<195>Q8NM31 Corynebacterium glutamicum P96258<94>P96259 Mycobacterium tuberculosis CDC1551 P96258<94>P96259 Mycobacterium tuberculosis H37Rv COG0538<>COG1187 - 2 - Isocitrate dehydrogenases ** 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Q8X724<202>Q8X722 Escherichia coli EDL933 Q8ZFQ3<80>AAM85370 Yersinia pestis KIM Q8Z7G6<172>Q8Z7G5 Salmonella typhi CT18 Q8ZPZ1<172>Q8ZPZ0 Salmonella typhimurium LT2 AAN42771<202>AAN42772 Shigella flexneri Q8ZFQ3<131>Q8ZFQ2 Yersinia pestis CO92 Q9CKK7<189>Q9CKK6 Pasteurella multocida YMFC_ECOLI<202>IDH_ECOLI Escherichia coli K12 Q8X724<172>Q8X722 Escherichia coli O157 COG0582<>COG2801 - 2 - Integrase ** Transposase and inactivated derivatives Q8X7K8<505>Q8X7K7 Escherichia coli EDL933 Q8XGL4<158>Q8XZB0 Ralstonia solanacearum Q8X7K8<568>Q8X7K7 Escherichia coli O157 COG0583<>COG1396 - 2 - Transcriptional regulator ** Predicted transcriptional regulators Q9PCQ9<9>Q9PCQ8 Xylella fastidiosa AAN67789<121>AAN67790 Pseudomonas putida Q8P638<103>Q8P637 Xanthomonas campestris COG1012<>COG1940 - 2 - NAD-dependent aldehyde dehydrogenases ** Transcriptional regulator/sugar kinase Q8ZL72<169>Q8ZL71 Salmonella typhimurium LT2 AAN25365<515>AAN25366 Bifidobacterium longum Q8Z2D6<169>Q8Z2D5 Salmonella typhi CT18 COG1018<>COG1309 - 2 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 ** Transcriptional regulator Q9HUS4<159>Q9HUS3 Pseudomonas aeruginosa Q8P437<76>Q8P436 Xanthomonas campestris Q8PFM0<93>Q8PFL9 Xanthomonas axonopodis COG1061<>NOG08647 - 2 - DNA or RNA helicases of superfamily II ** non supervised orthologous group BAC17701<2341>BAC17703 Corynebacterium efficiens Q8VKC6<2554>O53875 Mycobacterium tuberculosis CDC1551 O53873<2448>O53875 Mycobacterium tuberculosis H37Rv COG1230<>COG1937 - 2 - Co/Zn/Cd efflux system component ** Uncharacterized protein conserved in bacteria Q9I447<68>Q9I446 Pseudomonas aeruginosa Q8P3U6<66>Q8P3U5 Xanthomonas campestris Q8PFC4<66>Q8PFC3 Xanthomonas axonopodis COG1309<>COG2072 - 2 - Transcriptional regulator ** Predicted flavoprotein involved in K+ transport Q9I3H5<114>Q9I3H4 Pseudomonas aeruginosa P96223<76>P96222 Mycobacterium tuberculosis CDC1551 P96223<76>P96222 Mycobacterium tuberculosis H37Rv COG1737<>COG2103 - 2 - Transcriptional regulators ** Predicted sugar phosphate isomerase Q8XBJ3<164>Q8XBJ2 Escherichia coli EDL933 Q8ZCP7<208>Q8ZCP8 Yersinia pestis KIM AAO08041<238>AAO08042 Vibrio vulnificus YFET_ECOLI<164>YFEU_ECOLI Escherichia coli K12 Q8XBJ3<164>Q8XBJ2 Escherichia coli O157 Q8Z4L2<116>Q8Z4L1 Salmonella typhi CT18 Q8ZN25<116>Q8ZN24 Salmonella typhimurium LT2 Q8ZCP8<208>Q8ZCP7 Yersinia pestis CO92 YF76_PASMU<120>Q9CKN4 Pasteurella multocida COG1757<>COG2916 - 2 - Na+/H+ antiporter ** DNA-binding protein H-NS AAO11254<827>AAO11255 Vibrio vulnificus YF86_HAEIN<404>HNS_HAEIN Haemophilus influenzae Q9CMF8<488>Q9CMF7 Pasteurella multocida Q9KSX6<688>Q9KSX5 Vibrio cholerae COG2072<>COG2207 - 2 - Predicted flavoprotein involved in K+ transport ** AraC-type DNA-binding domain-containing proteins Q9I219<147>Q9I218 Pseudomonas aeruginosa VIRS_MYCTU<42>O53300 Mycobacterium tuberculosis CDC1551 VIRS_MYCTU<78>O53300 Mycobacterium tuberculosis H37Rv COG2115<>COG2207 - 2 - Xylose isomerase ** AraC-type DNA-binding domain-containing proteins XYLA_LACLA<105>Q9CFG6 Lactococcus lactis Q8ZL90<363>Q8ZL89 Salmonella typhimurium LT2 Q8Z2B9<363>Q8Z2B8 Salmonella typhi CT18 COG2197<>COG4585 - 2 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain ** Signal transduction histidine kinase AGMR_PSEAE<665>Q9I2C8 Pseudomonas aeruginosa O53856<72>O53857 Mycobacterium tuberculosis CDC1551 O53856<84>O53857 Mycobacterium tuberculosis H37Rv NOG05972<>NOG29144 - 2 - non supervised orthologous group ** non supervised orthologous group BAC18414<283>BAC18415 Corynebacterium efficiens Q8VJR5<166>O53492 Mycobacterium tuberculosis CDC1551 O53491<304>O53492 Mycobacterium tuberculosis H37Rv COG0008<>COG0658 - 2 - Glutamyl- and glutaminyl-tRNA synthetases ** Predicted membrane metal-binding protein Q9A722<163>Q9A721 Caulobacter crescentus Q98MD1<295>Q98MD0 Mesorhizobium loti COG0041<>COG2199 - 2 - Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase ** GGDEF domain Q9A3C0<231>Q9A3B9 Caulobacter crescentus BAC52378<89>BAC52379 Bradyrhizobium japonicum COG0105<>COG0488 - 2 - Nucleoside diphosphate kinase ** ATPase components of ABC transporters with duplicated ATPase domains Q9A7M3<97>NDK_CAUCR Caulobacter crescentus BAC49383<1028>BAC49384 Bradyrhizobium japonicum COG0123<>COG0778 - 2 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein ** Nitroreductase Y130_ARCFU<73>O30106 Archaeoglobus fulgidus Q985Y8<362>Q985Y7 Mesorhizobium loti COG0129<>COG2186 - 2 - Dihydroxyacid dehydratase/phosphogluconate dehydratase ** Transcriptional regulators Q9RJZ4<109>Q9RJZ3 Streptomyces coelicolor Q92T72<78>Q92T71 Sinorhizobium meliloti COG0144<>NOG08509 - 2 - tRNA and rRNA cytosine-C5-methylases ** non supervised orthologous group Q9ABW8<63>Q9ABW7 Caulobacter crescentus BAC45843<190>BAC45844 Bradyrhizobium japonicum COG0155<>COG2242 - 2 - Sulfite reductase, beta subunit (hemoprotein) ** Precorrin-6B methylase 2 Q9HZU1<337>Q9HZU0 Pseudomonas aeruginosa AAN70398<244>AAN70399 Pseudomonas putida AAN30203<74>AAN30204 Brucella suis COG0192<>COG0340 - 2 - S-adenosylmethionine synthetase ** Biotin-(acetyl-CoA carboxylase) ligase METK_LACLA<1771>Q9CED9 Lactococcus lactis AAM99717<185>AAM99718 Streptococcus agalactiae COG0196<>COG0784 - 2 - FAD synthase ** CheY-like receiver Q8XWL8<149>Q8XWL7 Ralstonia solanacearum BAC52744<61>BAC52745 Bradyrhizobium japonicum COG0300<>COG1846 - 2 - Short-chain dehydrogenases of various substrate specificities ** Transcriptional regulators O86553<132>O86554 Streptomyces coelicolor Q98I94<212>Q98I93 Mesorhizobium loti COG0318<>COG1028 - 2 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Q9A7C3<1316>Q9A7C1 Caulobacter crescentus BAC45773<101>BAC45774 Bradyrhizobium japonicum COG0321<>COG1886 - 2 - Lipoate-protein ligase B ** Flagellar motor switch/type III secretory pathway protein Q9A6B9<58>Q9A6B8 Caulobacter crescentus BAC50521<68>BAC50522 Bradyrhizobium japonicum COG0350<>COG0454 - 2 - Methylated DNA-protein cysteine methyltransferase ** Histone acetyltransferase HPA2 and related acetyltransferases Q9CI36<147>Q9CI35 Lactococcus lactis Q98I81<1126>Q98I79 Mesorhizobium loti COG0351<>COG0642 - 2 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase ** Signal transduction histidine kinase BAC51170<261>BAC51171 Bradyrhizobium japonicum Q9HX42<211>Q9HX41 Pseudomonas aeruginosa AAN70350<266>AAN70351 Pseudomonas putida COG0414<>COG1192 - 2 - Panthothenate synthetase ** ATPases involved in chromosome partitioning Q9A6C9<198>PANC_CAUCR Caulobacter crescentus BAC50426<279>BAC50427 Bradyrhizobium japonicum COG0463<>COG0500 - 2 - Glycosyltransferases involved in cell wall biogenesis ** SAM-dependent methyltransferases Q9UXK5<39>Q9UXK6 Sulfolobus solfataricus BAC52839<407>BAC52840 Bradyrhizobium japonicum Q96Z67<306>Q96Z66 Sulfolobus tokodaii COG0477<>COG0625 - 2 - Permeases of the major facilitator superfamily ** Glutathione S-transferase Q9A5G6<108>Q9A5G5 Caulobacter crescentus Q8UH49<685>Q8UH47 Agrobacterium tumefaciens Cereon COG0477<>COG0782 - 2 - Permeases of the major facilitator superfamily ** Transcription elongation factor Q9RSZ9<178>Q9RSZ8 Deinococcus radiodurans GREA_RHIME<293>Q92PZ5 Sinorhizobium meliloti COG0477<>COG1063 - 2 - Permeases of the major facilitator superfamily ** Threonine dehydrogenase and related Zn-dependent dehydrogenases Q8XTQ4<273>Q8XTQ3 Ralstonia solanacearum BAC50831<231>BAC50832 Bradyrhizobium japonicum COG0477<>COG1972 - 2 - Permeases of the major facilitator superfamily ** Nucleoside permease BAC50885<51>BAC50886 Bradyrhizobium japonicum O25792<317>O25793 Helicobacter pylori 26695 Q9ZK36<330>Q9ZK35 Helicobacter pylori J99 COG0500<>COG0695 - 2 - SAM-dependent methyltransferases ** Glutaredoxin and related proteins Q9A9Y2<825>Q9A9Y0 Caulobacter crescentus Q98G79<747>Q98G77 Mesorhizobium loti COG0534<>COG1309 - 2 - Na+-driven multidrug efflux pump ** Transcriptional regulator BAC52169<81>BAC52170 Bradyrhizobium japonicum Q9HRF3<414>Q9HRF2 Halobacterium sp NRC-1 COG0543<>COG0583 - 2 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases ** Transcriptional regulator AAN58909<253>AAN58910 Streptococcus mutans Q8Y0F3<134>Q8Y0F2 Ralstonia solanacearum COG0572<>COG0673 - 2 - Uridine kinase ** Predicted dehydrogenases and related proteins AAN59052<219>AAN59053 Streptococcus mutans URK_LACLA<298>Q9CF20 Lactococcus lactis COG0580<>NOG04844 - 2 - Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) ** non supervised orthologous group GLA_LACLA<172>PEPX_LACLA Lactococcus lactis AAN58151<115>AAN58152 Streptococcus mutans COG0583<>COG0654 - 2 - Transcriptional regulator ** 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Q8XX74<122>Q8XX73 Ralstonia solanacearum BAC45674<67>BAC45675 Bradyrhizobium japonicum COG0583<>COG0834 - 2 - Transcriptional regulator ** ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Q8XPR4<162>Q8XPR3 Ralstonia solanacearum Q8YJG8<396>Q8YJG7 Brucella melitensis COG0583<>COG1359 - 2 - Transcriptional regulator ** Uncharacterized conserved protein Q9I5M0<116>Q9I5L9 Pseudomonas aeruginosa Q9HY52<96>Q9HY51 Pseudomonas aeruginosa Q930A8<4>Q930A7 Sinorhizobium meliloti COG0583<>COG3485 - 2 - Transcriptional regulator ** Protocatechuate 3,4-dioxygenase beta subunit Q8XZG1<99>Q8XZG0 Ralstonia solanacearum BAC47597<60>BAC47598 Bradyrhizobium japonicum COG0583<>COG3631 - 2 - Transcriptional regulator ** Ketosteroid isomerase-related protein Q9A6F1<73>Q9A6F0 Caulobacter crescentus BAC47769<56>BAC47770 Bradyrhizobium japonicum COG0589<>COG0784 - 2 - Universal stress protein UspA and related nucleotide-binding proteins ** CheY-like receiver BAC47549<798>BAC47550 Bradyrhizobium japonicum Q9K4L6<145>Q9K4L5 Streptomyces coelicolor COG0614<>COG1629 - 2 - ABC-type Fe3+-hydroxamate transport system, periplasmic component ** Outer membrane receptor proteins, mostly Fe transport Q92YC2<263>Q92YC1 Sinorhizobium meliloti Q8RF35<203>Q8RF34 Fusobacterium nucleatum COG0625<>COG2202 - 2 - Glutathione S-transferase ** PAS/PAC domain Q92RD1<266>Q92KJ3 Sinorhizobium meliloti Q9A472<602>Q9A470 Caulobacter crescentus COG0640<>COG1309 - 2 - Predicted transcriptional regulators ** Transcriptional regulator AAN51663<835>AAN51664 Leptospira interrogans BAC50916<111>BAC50917 Bradyrhizobium japonicum COG0642<>COG0668 - 2 - Signal transduction histidine kinase ** Small-conductance mechanosensitive channel Q8YQX0<551>Q8YQW9 Nostoc sp PCC 7120 Q92ZH9<293>Q92ZH8 Sinorhizobium meliloti COG0664<>COG0784 - 2 - cAMP-binding proteins Q9AA54<167>Q9AA53 Caulobacter crescentus BAC45800<108>BAC45801 Bradyrhizobium japonicum COG0664<>COG1028 - 2 - cAMP-binding proteins Q92MW8<343>Q92MW7 Sinorhizobium meliloti Q8RGR9<188>Q8RGR8 Fusobacterium nucleatum COG0665<>COG1802 - 2 - Glycine/D-amino acid oxidases (deaminating) ** Transcriptional regulators Q8XXK0<767>Q8XXJ9 Ralstonia solanacearum Q8YJ32<280>Q8YJ30 Brucella melitensis COG0673<>COG2188 - 2 - Predicted dehydrogenases and related proteins ** Transcriptional regulators Q8UC94<396>Q8UC92 Agrobacterium tumefaciens Cereon Q9RKT7<129>Q9RKT6 Streptomyces coelicolor COG0683<>COG2207 - 2 - ABC-type branched-chain amino acid transport systems, periplasmic component ** AraC-type DNA-binding domain-containing proteins Q8XUX2<193>Q8XUX1 Ralstonia solanacearum BAC51672<40>BAC51673 Bradyrhizobium japonicum COG0725<>COG3585 - 2 - ABC-type molybdate transport system, periplasmic component ** Molybdopterin-binding protein Q98KI1<213>Q98KI0 Mesorhizobium loti Q8YLW9<99>Q8YLW8 Nostoc sp PCC 7120 COG0735<>COG0803 - 2 - Fe2+/Zn2+ uptake regulation proteins ** ABC-type metal ion transport system, periplasmic component/surface adhesin P73084<107>P73085 Synechocystis sp PCC 6803 Q92LL6<122>Q92LL5 Sinorhizobium meliloti COG0745<>COG3713 - 2 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** Outer membrane protein V Q8XUW9<182>Q8XUW8 Ralstonia solanacearum BAC51141<197>BAC51142 Bradyrhizobium japonicum COG0834<>COG1414 - 2 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain ** Transcriptional regulator Q8XTY5<205>Q8XTY4 Ralstonia solanacearum Q98FF7<170>Q98FF6 Mesorhizobium loti COG0834<>COG2812 - 2 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain ** DNA polymerase III, gamma/tau subunits Q9I3I2<37>Q9I3I1 Pseudomonas aeruginosa AAN69849<122>AAN69850 Pseudomonas putida BAC53381<374>BAC53382 Bradyrhizobium japonicum COG1014<>COG1522 - 2 - Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit ** Transcriptional regulators Q9A3M6<5>Q9A3M5 Caulobacter crescentus BAC52853<155>BAC52854 Bradyrhizobium japonicum COG1028<>COG1959 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Predicted transcriptional regulator Q8U9R1<262>Q8U9R0 Agrobacterium tumefaciens Wash Q9L1Y4<128>Q9L1Y3 Streptomyces coelicolor COG1182<>COG1733 - 2 - Acyl carrier protein phosphodiesterase ** Predicted transcriptional regulators ACPD_ANASP<231>Q8YV75 Nostoc sp PCC 7120 BAC50370<84>BAC50371 Bradyrhizobium japonicum COG1218<>COG5385 - 2 - 3-Phosphoadenosine 5-phosphosulfate (PAPS) 3-phosphatase ** Uncharacterized protein conserved in bacteria Q9A2T7<244>Q9A2T6 Caulobacter crescentus BAC47455<128>BAC47456 Bradyrhizobium japonicum COG1309<>COG1879 - 2 - Transcriptional regulator ** ABC-type sugar transport system, periplasmic component Q9X837<356>O66122 Streptomyces coelicolor Q92YT4<250>Q92YT3 Sinorhizobium meliloti COG1309<>COG1924 - 2 - Transcriptional regulator ** Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) AAN58189<281>AAN58190 Streptococcus mutans Q9CDI2<409>Q9CDI1 Lactococcus lactis COG1309<>COG2376 - 2 - Transcriptional regulator ** Dihydroxyacetone kinase Q9CIV9<121>Q9CIV8 Lactococcus lactis Q8P228<152>Q8P227 Streptococcus pyogenes M18 COG1309<>NOG14306 - 2 - Transcriptional regulator ** non supervised orthologous group Q9KZX2<182>Q9KZX1 Streptomyces coelicolor BAC53449<223>BAC53450 Bradyrhizobium japonicum COG1309<>NOG25065 - 2 - Transcriptional regulator ** non supervised orthologous group AAN57827<168>AAN57828 Streptococcus mutans Q97L42<167>Q97L41 Clostridium acetobutylicum Q97L44<152>Q97L43 Clostridium acetobutylicum COG1321<>COG1914 - 2 - Mn-dependent transcriptional regulator ** Mn2+ and Fe2+ transporters of the NRAMP family Q9PEL5<165>Q9PEL3 Xylella fastidiosa Q8P8R9<144>Q8P8R8 Xanthomonas campestris Q98IA0<231>MNTH_RHILO Mesorhizobium loti Q8PKX1<161>Q8PKX0 Xanthomonas axonopodis COG1396<>COG1476 - 2 - Predicted transcriptional regulators ** Predicted transcriptional regulators Q97QS0<120>Q97QR9 Streptococcus pneumoniae TIGR4 Q9CE99<149>Q9CE98 Lactococcus lactis COG1522<>COG2515 - 2 - Transcriptional regulators ** 1-aminocyclopropane-1-carboxylate deaminase Q8XS36<109>Q8XS35 Ralstonia solanacearum BAC45505<164>BAC45506 Bradyrhizobium japonicum COG1522<>COG3545 - 2 - Transcriptional regulators ** Predicted esterase of the alpha/beta hydrolase fold Q8XX01<124>Q8XX00 Ralstonia solanacearum Q98JQ9<109>Q98JQ8 Mesorhizobium loti COG1522<>COG5006 - 2 - Transcriptional regulators ** Predicted permease, DMT superfamily Q8XVM9<205>Q8XVM8 Ralstonia solanacearum Q98KG1<42>Q98KG0 Mesorhizobium loti COG1566<>COG1846 - 2 - Multidrug resistance efflux pump ** Transcriptional regulators Q8XVV2<76>Q8XVV1 Ralstonia solanacearum BAC53221<704>BAC53223 Bradyrhizobium japonicum COG1609<>COG1960 - 2 - Transcriptional regulators ** Acyl-CoA dehydrogenases Q9KYS3<293>Q9KYS2 Streptomyces coelicolor BAC51642<10>BAC51643 Bradyrhizobium japonicum COG1611<>COG5265 - 2 - Predicted Rossmann fold nucleotide-binding protein ** ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components Q9A8P0<108>Q9A8N9 Caulobacter crescentus BAC49059<192>BAC49060 Bradyrhizobium japonicum COG1653<>COG1802 - 2 - ABC-type sugar transport system, periplasmic component ** Transcriptional regulators Q9FBS5<136>Q9FBS4 Streptomyces coelicolor Q98IN6<227>Q98IN5 Mesorhizobium loti COG1695<>NOG08247 - 2 - Predicted transcriptional regulators ** non supervised orthologous group BAC46421<72>BAC46422 Bradyrhizobium japonicum Q9FC31<81>Q9FC30 Streptomyces coelicolor COG1802<>COG4638 - 2 - Transcriptional regulators ** Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Q9A5Q5<142>Q9A5Q4 Caulobacter crescentus Q92YP5<217>Q92YP4 Sinorhizobium meliloti COG1846<>COG4312 - 2 - Transcriptional regulators ** Uncharacterized protein conserved in bacteria Q8UH33<150>Q8UH32 Agrobacterium tumefaciens Wash Q8Y0D2<161>Q8Y0D1 Ralstonia solanacearum COG1846<>NOG13236 - 2 - Transcriptional regulators ** non supervised orthologous group Q98CH2<53>Q98CH1 Mesorhizobium loti Q8XYB4<139>Q8XYB3 Ralstonia solanacearum COG1937<>COG2217 - 2 - Uncharacterized protein conserved in bacteria ** Cation transport ATPase AAN24245<112>AAN24246 Bifidobacterium longum BAC45965<69>BAC45966 Bradyrhizobium japonicum COG1952<>COG4395 - 2 - Preprotein translocase subunit SecB ** Uncharacterized protein conserved in bacteria BAC45906<416>BAC45907 Bradyrhizobium japonicum Q9A225<44>Q9A224 Caulobacter crescentus COG1960<>COG2207 - 2 - Acyl-CoA dehydrogenases ** AraC-type DNA-binding domain-containing proteins Q8XS29<119>Q8XS28 Ralstonia solanacearum BAC49683<148>BAC49684 Bradyrhizobium japonicum COG2038<>COG3313 - 2 - NaMN:DMB phosphoribosyltransferase ** Predicted Fe-S protein Q98MI8<198>Q98MI7 Mesorhizobium loti Q9A8P5<87>Q9A8P4 Caulobacter crescentus COG2199<>COG4977 - 2 - GGDEF domain ** Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain AAN69263<1389>AAN69265 Pseudomonas putida Q9I2P5<249>Q9I2P4 Pseudomonas aeruginosa Q98JA7<162>Q98JA6 Mesorhizobium loti COG2207<>COG2963 - 2 - AraC-type DNA-binding domain-containing proteins ** Transposase and inactivated derivatives Q989X8<563>Q989X7 Mesorhizobium loti Q8XYC7<579>Q8XYC6 Ralstonia solanacearum COG2884<>NOG10097 - 2 - Predicted ATPase involved in cell division ** non supervised orthologous group Q9A679<26>Q9A678 Caulobacter crescentus BAC46654<111>BAC46655 Bradyrhizobium japonicum COG2755<>COG3127 - 2 - Lysophospholipase L1 and related esterases ** Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Q8XCZ6<651>Q8XCZ5 Escherichia coli EDL933 AAM84677<609>AAM84679 Yersinia pestis KIM TESA_ECOLI<621>AAN79094 Escherichia coli O6 BAC45724<661>BAC45726 Bradyrhizobium japonicum Q8Z8R9<654>Q8Z8R8 Salmonella typhi CT18 Q8ZR91<654>Q8ZR90 Salmonella typhimurium LT2 TESA_ECOLI<651>YBBP_ECOLI Escherichia coli K12 Q8XCZ6<651>Q8XCZ5 Escherichia coli O157 Q8YEL8<934>Q8YEL7 Brucella melitensis Q8ZCB5<651>Q8ZCB3 Yersinia pestis CO92 Q9KLG3<625>Q9KLG1 Vibrio cholerae AAN55940<734>AAN55942 Shewanella oneidensis COG0095<>COG1404 - 2 - Lipoate-protein ligase A ** Subtilisin-like serine proteases Q9KF14<234>Q9KF13 Bacillus halodurans O67764<35>O67765 Aquifex aeolicus COG0111<>COG0243 - 2 - Phosphoglycerate dehydrogenase and related dehydrogenases ** Anaerobic dehydrogenases, typically selenocysteine-containing O34815<324>O34323 Bacillus subtilis Q8TYH9<457>Q8TYH8 Methanopyrus kandleri COG0315<>COG0521 - 2 - Molybdenum cofactor biosynthesis enzyme ** Molybdopterin biosynthesis enzymes MOAC_THEAC<88>Q9HKV0 Thermoplasma acidophilum MOAC_THEVO<716>Q97AP9 Thermoplasma volcanium Q9K8I4<181>MOAC_BACHD Bacillus halodurans COG0438<>COG1109 - 2 - Glycosyltransferase ** Phosphomannomutase AAO05682<218>AAO05683 Staphylococcus epidermidis O66800<1081>O66801 Aquifex aeolicus COG0438<>NOG07017 - 2 - Glycosyltransferase ** non supervised orthologous group CTSA_BACSU<190>O34656 Bacillus subtilis Q97F47<792>Q97F46 Clostridium acetobutylicum Q8XIA3<109>Q8XIA2 Clostridium perfringens COG0451<>COG1210 - 2 - Nucleoside-diphosphate-sugar epimerases ** UDP-glucose pyrophosphorylase Q8PXT3<120>Q8PXT2 Methanosarcina mazei Q8THQ3<111>Q8THQ2 Methanosarcina acetivorans Q9KAI4<373>Q9KAI3 Bacillus halodurans COG0454<>COG0583 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Transcriptional regulator O34350<153>YTLI_BACSU Bacillus subtilis AAN67687<198>AAN67688 Pseudomonas putida Q9I641<88>Q9I640 Pseudomonas aeruginosa COG0454<>COG1167 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs O07578<110>O07579 Bacillus subtilis Q9HWL6<132>Q9HWL5 Pseudomonas aeruginosa Q9HTD5<128>Q9HTD4 Pseudomonas aeruginosa COG0454<>COG1846 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Transcriptional regulators Q9AJY7<31>Q9AJY6 Streptomyces coelicolor YYBA_BACSU<120>YYAT_BACSU Bacillus subtilis COG0583<>COG2076 - 2 - Transcriptional regulator ** Membrane transporters of cations and cationic drugs Q9HUH6<85>Q9HUH5 Pseudomonas aeruginosa AAN70496<72>AAN70497 Pseudomonas putida Q9KEL3<109>Q9KEL2 Bacillus halodurans COG0604<>COG1024 - 2 - NADPH:quinone reductase and related Zn-dependent oxidoreductases ** Enoyl-CoA hydratase/carnithine racemase Q9A3W7<277>Q9A3W6 Caulobacter crescentus BAC12773<287>BAC12774 Oceanobacillus iheyhensis COG0604<>COG1733 - 2 - NADPH:quinone reductase and related Zn-dependent oxidoreductases ** Predicted transcriptional regulators Q8UGN9<105>Q8UGN8 Agrobacterium tumefaciens Wash Q8UGN9<105>Q8UGN8 Agrobacterium tumefaciens Cereon Q98I31<140>Q98I30 Mesorhizobium loti Q92R74<101>Q92R73 Sinorhizobium meliloti BAC50635<134>BAC50636 Bradyrhizobium japonicum Q98HL4<90>Q98HL3 Mesorhizobium loti Q985B7<33>Q985B6 Mesorhizobium loti Q9KEW2<131>Q9KEW1 Bacillus halodurans COG0608<>COG3666 - 2 - Single-stranded DNA-specific exonuclease ** Transposase and inactivated derivatives AAO04917<476>AAO04918 Staphylococcus epidermidis Q8R6I3<225>Q8R6A6 Fusobacterium nucleatum COG0640<>NOG15998 - 2 - Predicted transcriptional regulators ** non supervised orthologous group AAO03735<521>AAO03736 Staphylococcus epidermidis O52028<341>O52029 Halobacterium sp NRC-1 COG0683<>COG0831 - 2 - ABC-type branched-chain amino acid transport systems, periplasmic component ** Urea amidohydrolase (urease) gamma subunit Q9KG62<237>Q9KG61 Bacillus halodurans Q9RYJ3<230>Q9RYJ2 Deinococcus radiodurans COG0778<>COG1846 - 2 - Nitroreductase ** Transcriptional regulators AAO05607<156>AAO05608 Staphylococcus epidermidis Q8Y332<152>Q8Y331 Ralstonia solanacearum COG1012<>COG1609 - 2 - NAD-dependent aldehyde dehydrogenases ** Transcriptional regulators Q9KAH5<486>Q9KAH4 Bacillus halodurans Q9RKF2<162>Q9RKF1 Streptomyces coelicolor COG1023<>COG1737 - 2 - Predicted 6-phosphogluconate dehydrogenase ** Transcriptional regulators Q9CDN4<361>Q9CDN3 Lactococcus lactis Q9K9H3<172>Q9K9H2 Bacillus halodurans COG1028<>COG2378 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Predicted transcriptional regulator Q9KFR7<107>Q9KFR6 Bacillus halodurans AAN50106<519>AAN50107 Leptospira interrogans COG1075<>COG1695 - 2 - Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold ** Predicted transcriptional regulators Q9RSP6<68>Q9RSP5 Deinococcus radiodurans P94443<273>P94444 Bacillus subtilis COG1272<>NOG29765 - 2 - Predicted membrane protein, hemolysin III homolog ** non supervised orthologous group Q97KN6<200>Q97KN5 Clostridium acetobutylicum Q8XKC7<239>Q8XKC6 Clostridium perfringens BAC14365<164>BAC14366 Oceanobacillus iheyhensis COG1396<>NOG15503 - 2 - Predicted transcriptional regulators ** non supervised orthologous group Q9CGT1<168>Q9CGT0 Lactococcus lactis Q8NVM5<159>Q8NVM4 Staphylococcus aureus MW2 COG1544<>COG3666 - 2 - Ribosome-associated protein Y (PSrp-1) ** Transposase and inactivated derivatives Q9K6W6<497>Q9K6W5 Bacillus halodurans Q8RCC1<192>Q8RCC0 Thermoanaerobacter tengcongensis COG2207<>COG3011 - 2 - AraC-type DNA-binding domain-containing proteins ** Uncharacterized protein conserved in bacteria Q8YSB8<154>Q8YSB7 Nostoc sp PCC 7120 Q9KEK1<140>Q9KEK0 Bacillus halodurans COG2357<>COG4116 - 2 - Uncharacterized protein conserved in bacteria ** Uncharacterized protein conserved in bacteria AAN58745<499>AAN58747 Streptococcus mutans AAM99976<110>AAM99977 Streptococcus agalactiae Q99ZQ9<88>Q99ZQ8 Streptococcus pyogenes M1 Q97QV2<128>Q97QV1 Streptococcus pneumoniae TIGR4 AAK99807<128>AAK99808 Streptococcus pneumoniae R6 BAC13175<173>BAC13176 Oceanobacillus iheyhensis Q8P136<88>Q99ZQ8 Streptococcus pyogenes M18 Q8K7J3<88>Q99ZQ8 Streptococcus pyogenes M3 COG0082<>COG2840 - 2 - Chorismate synthase ** Uncharacterized protein conserved in bacteria AROC_BUCAI<296>Y098_BUCAI Buchnera aphidicola APS AROC_ECOL6<1133>YFCN_ECO57 Escherichia coli EDL933 AROC_ECOL6<1130>YFCN_ECOLI Escherichia coli O6 AAN43918<1130>YFCN_ECOLI Shigella flexneri AROC_ECOLI<1133>YFCN_ECOLI Escherichia coli K12 AROC_ECOL6<1133>YFCN_ECO57 Escherichia coli O157 AROC_BUCAP<203>Y091_BUCAP Buchnera aphidicola Schiz COG0243<>COG1526 - 2 - Anaerobic dehydrogenases, typically selenocysteine-containing ** Uncharacterized protein required for formate dehydrogenase activity Q8X8B7<194>Q8X8B5 Escherichia coli EDL933 AAN83273<194>AAN83275 Escherichia coli O6 Q8ZKS8<195>Q8ZKS7 Salmonella typhimurium LT2 AAN45405<194>AAN45406 Shigella flexneri Q9CNL8<243>FDHD_PASMU Pasteurella multocida FDOG_ECOLI<194>FDHD_ECOLI Escherichia coli K12 Q8X8B7<194>Q8X8B5 Escherichia coli O157 Q8Z2U7<228>Q8Z2U6 Salmonella typhi CT18 COG0301<>COG1722 - 2 - Thiamine biosynthesis ATP pyrophosphatase ** Exonuclease VII small subunit EX7S_ECOLI<206>THII_ECO57 Escherichia coli EDL933 EX7S_ECOLI<206>AAN79012 Escherichia coli O6 EX7S_SALTY<210>THII_SALTI Salmonella typhi CT18 EX7S_SALTY<210>THII_SALTY Salmonella typhimurium LT2 AAN42017<206>AAN42018 Shigella flexneri EX7S_PASMU<201>THII_PASMU Pasteurella multocida EX7S_ECOLI<206>THII_ECOLI Escherichia coli K12 EX7S_ECOLI<206>THII_ECO57 Escherichia coli O157 COG0457<>COG1309 - 2 - TPR repeat ** Transcriptional regulator Q55362<217>Q55363 Synechocystis sp PCC 6803 AAO08541<491>AAO08542 Vibrio vulnificus COG0477<>COG1940 - 2 - Permeases of the major facilitator superfamily ** Transcriptional regulator/sugar kinase Q8ZEB5<1313>Q8ZEB4 Yersinia pestis CO92 Q9L112<113>Q9L111 Streptomyces coelicolor COG0500<>COG0741 - 2 - SAM-dependent methyltransferases ** Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Q8ZH31<809>AAM86648 Yersinia pestis KIM Q9JZ46<179>Q9JZ45 Neisseria meningitidis B Q9JU40<178>Q9JU39 Neisseria meningitidis A COG0517<>COG1032 - 2 - CBS domain ** Fe-S oxidoreductase Q978T0<190>Q978S9 Thermoplasma volcanium Q9KRD2<280>Q9KRD1 Vibrio cholerae Q9HLE0<164>Q9HLD9 Thermoplasma acidophilum COG0582<>COG1501 - 2 - Integrase ** Alpha-glucosidases, family 31 of glycosyl hydrolases AAN24365<496>AAN24366 Bifidobacterium longum AAN45143<2052>AAN45144 Shigella flexneri COG0583<>COG1414 - 2 - Transcriptional regulator ** Transcriptional regulator Q53869<3354>Q9X9U3 Streptomyces coelicolor Q8Z8R3<787>Q8Z8R2 Salmonella typhi CT18 COG0583<>COG3329 - 2 - Transcriptional regulator ** Predicted permease AAN56738<125>AAN56739 Shewanella oneidensis Q9A2P7<29>Q9A2P6 Caulobacter crescentus COG0583<>COG3508 - 2 - Transcriptional regulator ** Homogentisate 1,2-dioxygenase HGD_RALSO<205>Q8XRY9 Ralstonia solanacearum AAN55014<219>AAN55016 Shewanella oneidensis COG0604<>COG2199 - 2 - NADPH:quinone reductase and related Zn-dependent oxidoreductases ** GGDEF domain Q8P783<777>Q8P782 Xanthomonas campestris Q8ZAW8<401>Q8ZAW7 Yersinia pestis CO92 Q8X9C7<152>Q8X9C1 Escherichia coli EDL933 Q8ZAW7<401>Q8ZAW8 Yersinia pestis KIM AAN82448<152>AAN82449 Escherichia coli O6 Q8Z3D5<204>Q8XG63 Salmonella typhi CT18 Q8ZLP2<204>Q8XG63 Salmonella typhimurium LT2 AAN44754<152>AAN44755 Shigella flexneri YHDA_ECOLI<152>YHDH_ECOLI Escherichia coli K12 Q8X9C7<152>Q8X9C1 Escherichia coli O157 COG0644<>COG2086 - 2 - Dehydrogenases (flavoproteins) ** Electron transfer flavoprotein, beta subunit Q9HZP6<321>Q9HZP5 Pseudomonas aeruginosa AAN69783<536>AAN69784 Pseudomonas putida AAO07426<221>AAO07427 Vibrio vulnificus COG0741<>COG4886 - 2 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) ** Leucine-rich repeat (LRR) protein Q8XRJ0<440>Q8XRI9 Ralstonia solanacearum AAN56990<349>AAN56991 Shewanella oneidensis COG0744<>COG0745 - 2 - Membrane carboxypeptidase (penicillin-binding protein) ** Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Q8YLH5<533>Q8YLH4 Nostoc sp PCC 7120 Q9KSD8<376>Q9KSD7 Vibrio cholerae COG0784<>COG2197 - 2 - CheY-like receiver ** Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Q9I3U8<146>Q9I3U7 Pseudomonas aeruginosa Q9HX69<282>Q9HX68 Pseudomonas aeruginosa AAN57409<97>AAN57410 Shewanella oneidensis COG0784<>COG2265 - 2 - CheY-like receiver ** SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase AAO09997<173>AAO09998 Vibrio vulnificus RUMA_ECO57<57>BARA_ECOLI Escherichia coli EDL933 AAN81796<57>BARA_ECOLI Escherichia coli O6 RUMA_XYLFA<198>Q9PAY6 Xylella fastidiosa RUMA_SALTY<58>Q9L9E4 Salmonella typhimurium LT2 AAN44286<57>BARA_SHIFL Shigella flexneri RUMA_VIBCH<172>Q9KPC0 Vibrio cholerae AAN56449<121>AAN56450 Shewanella oneidensis RUMA_ECOLI<57>BARA_ECOLI Escherichia coli K12 RUMA_ECO57<57>BARA_ECOLI Escherichia coli O157 COG0810<>COG1629 - 2 - Periplasmic protein TonB, links inner and outer membranes ** Outer membrane receptor proteins, mostly Fe transport O66812<73>O66813 Aquifex aeolicus AAN56654<246>AAN56655 Shewanella oneidensis COG1017<>COG3604 - 2 - Hemoglobin-like flavoprotein ** Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Q9I0H4<155>Q9I0H3 Pseudomonas aeruginosa AAN66432<156>AAN66433 Pseudomonas putida Q9KMY4<191>HMPA_VIBCH Vibrio cholerae COG1183<>NOG07341 - 2 - Phosphatidylserine synthase ** non supervised orthologous group Q9PG60<193>Q9PG58 Xylella fastidiosa AAN56564<91>AAN56565 Shewanella oneidensis Q8PGQ1<165>Q8PGQ0 Xanthomonas axonopodis Q8PCS3<169>Q8PCS2 Xanthomonas campestris COG1278<>COG2206 - 2 - Cold shock proteins ** HD-GYP domain Q9X210<224>CSP_THEMA Thermotoga maritima Q9KL18<349>CSPV_VIBCH Vibrio cholerae COG1309<>COG1398 - 2 - Transcriptional regulator ** Fatty-acid desaturase Q8YME3<386>Q8YME2 Nostoc sp PCC 7120 AAN53284<144>AAN53285 Shewanella oneidensis COG1344<>COG1345 - 2 - Flagellin and related hook-associated proteins ** Flagellar capping protein Q9K2Y6<266>FLID_ECO57 Escherichia coli EDL933 Q8ZF76<297>Q8ZF77 Yersinia pestis KIM AAN80797<266>AAN80798 Escherichia coli O6 Q56086<257>Q8Z5S7 Salmonella typhi CT18 FLIC_SALTY<257>FLID_SALTY Salmonella typhimurium LT2 FLIC_SHIFL<266>AAN43517 Shigella flexneri FLIC_ECOLI<266>FLID_ECOLI Escherichia coli K12 Q9K2Y6<266>FLID_ECO57 Escherichia coli O157 BAC24209<203>BAC24210 Wigglesworthia brevipalpis Q8ZF77<297>Q8ZF76 Yersinia pestis CO92 COG1560<>COG2870 - 2 - Lauroyl/myristoyl acyltransferase ** ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase AAN56728<103>AAN56729 Shewanella oneidensis RFAE_HAEIN<85>HTRB_HAEIN Haemophilus influenzae Q9CME6<224>Q9CME5 Pasteurella multocida COG1666<>COG1893 - 2 - Uncharacterized protein conserved in bacteria ** Ketopantoate reductase Q8ZC52<223>PANE_YERPE Yersinia pestis CO92 PANE_ECO57<150>YAJQ_ECOLI Escherichia coli EDL933 AAN79014<0>YAJQ_ECOLI Escherichia coli O6 AAN66974<101>AAN66975 Pseudomonas putida PANE_SALTI<108>Q8Z8W2 Salmonella typhi CT18 PANE_SALTY<108>Q8ZRC9 Salmonella typhimurium LT2 PANE_ECOLI<150>YAJQ_ECOLI Escherichia coli K12 PANE_ECO57<150>YAJQ_ECOLI Escherichia coli O157 COG2220<>COG3037 - 2 - Predicted Zn-dependent hydrolases of the beta-lactamase fold ** Uncharacterized protein conserved in bacteria Q8XDJ6<292>Q8XDJ5 Escherichia coli EDL933 AAN83701<349>AAN83702 Escherichia coli O6 Q8XG87<330>Q8Z172 Salmonella typhi CT18 Q8XG87<330>Q8ZK90 Salmonella typhimurium LT2 AAN45764<292>AAN45765 Shigella flexneri Q9CMQ2<263>Q9CMQ1 Pasteurella multocida YJFR_ECOLI<292>SGAT_ECOLI Escherichia coli K12 Q8XDJ6<292>Q8XDJ5 Escherichia coli O157 COG2813<>COG3145 - 2 - 16S RNA G1207 methylase RsmC ** Alkylated DNA repair protein AAN54168<368>AAN54169 Shewanella oneidensis Q9K3M0<76>Q9K3L9 Streptomyces coelicolor COG2963<>COG4584 - 2 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives Q8XWY6<99>Q8XG54 Ralstonia solanacearum P74993<87>Q8ZAT6 Yersinia pestis CO92 COG3547<>COG4886 - 2 - Transposase and inactivated derivatives ** Leucine-rich repeat (LRR) protein Q8VSM4<337>Q8VSM3 Shigella flexneri AAN47900<251>AAN47901 Leptospira interrogans COG0266<>COG2226 - 2 - Formamidopyrimidine-DNA glycosylase ** Methylase involved in ubiquinone/menaquinone biosynthesis Q8UIH5<144>FPG_AGRT5 Agrobacterium tumefaciens Wash Q8UIH5<60>FPG_AGRT5 Agrobacterium tumefaciens Cereon BAC46026<82>BAC46027 Bradyrhizobium japonicum Q92SK7<146>FPG_RHIME Sinorhizobium meliloti UBIE_RICCN<29>FPG_RICCN Rickettsia conorii COG0277<>COG0583 - 2 - FAD/FMN-containing dehydrogenases ** Transcriptional regulator Q8YB37<165>Q8YB36 Brucella melitensis AAN70068<153>AAN70069 Pseudomonas putida Q8UHL6<94>Q8UHL5 Agrobacterium tumefaciens Wash Q8UHL6<148>Q8UHL5 Agrobacterium tumefaciens Cereon Q92RS4<200>Q92RS3 Sinorhizobium meliloti COG2188<>COG2820 - 2 - Transcriptional regulators ** Uridine phosphorylase Q8XNE9<234>Q8XNE8 Clostridium perfringens Q99Y49<240>Q99Y48 Streptococcus pyogenes M1 Q99Y49<241>Q8NZG8 Streptococcus pyogenes M18 Q99Y49<241>Q8NZG8 Streptococcus pyogenes M3 AAN00931<158>AAN00932 Streptococcus agalactiae COG0477<>COG1670 - 2 - Permeases of the major facilitator superfamily ** Acetyltransferases, including N-acetylases of ribosomal proteins Q8X8N0<206>RIMJ_ECOLI Escherichia coli EDL933 YCEL_ECOLI<206>AAN79806 Escherichia coli O6 Q8Z7L0<237>Q8Z7K9 Salmonella typhi CT18 Q8ZQ19<237>Q8ZQ18 Salmonella typhimurium LT2 AAN42693<206>RIMJ_ECOLI Shigella flexneri Q8ZHB4<1895>Q8ZHB3 Yersinia pestis CO92 Q8ZEW3<294>Q8ZEW2 Yersinia pestis CO92 YCEL_ECOLI<206>RIMJ_ECOLI Escherichia coli K12 Q8X8N0<206>RIMJ_ECOLI Escherichia coli O157 Q8Y3J1<155>Q8Y3J0 Listeria monocytogenes Q926R5<155>Q926R4 Listeria innocua Q8ZEW2<294>Q8ZEW3 Yersinia pestis KIM COG0073<>COG1828 - 2 - EMAP domain ** Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Q9UX19<678>Q97ZQ8 Sulfolobus solfataricus Q97BA7<92>Q97BA6 Thermoplasma volcanium COG0446<>COG0607 - 2 - Uncharacterized NAD(FAD)-dependent dehydrogenases ** Rhodanese-related sulfurtransferase Q8NM70<255>Q8NM69 Corynebacterium glutamicum Q974P6<489>Q974P4 Sulfolobus tokodaii COG0446<>COG1695 - 2 - Uncharacterized NAD(FAD)-dependent dehydrogenases ** Predicted transcriptional regulators Q96YG1<120>Q96YG0 Sulfolobus tokodaii Q97DV1<249>Q97DV0 Clostridium acetobutylicum COG0451<>COG0463 - 2 - Nucleoside-diphosphate-sugar epimerases ** Glycosyltransferases involved in cell wall biogenesis Q97KX2<129>Q97KX1 Clostridium acetobutylicum Q9UXJ3<1529>Q9UXJ4 Sulfolobus solfataricus COG0454<>COG1396 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Predicted transcriptional regulators Q97G79<345>Q97G78 Clostridium acetobutylicum Q9I2L3<86>Q9I2L2 Pseudomonas aeruginosa COG0463<>COG1216 - 2 - Glycosyltransferases involved in cell wall biogenesis ** Predicted glycosyltransferases BAC17145<110>BAC17146 Corynebacterium efficiens Q96Z71<50>Q96Z70 Sulfolobus tokodaii COG0463<>COG1887 - 2 - Glycosyltransferases involved in cell wall biogenesis ** Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC O58133<59>O58134 Pyrococcus horikoshii Q8P4G5<1>Q8P4G4 Xanthomonas campestris Q8PG26<1>Q8PG25 Xanthomonas axonopodis COG0639<>COG4948 - 2 - Diadenosine tetraphosphatase and related serine/threonine protein phosphatases ** L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Q96Y01<78>Q96Y00 Sulfolobus tokodaii Q979E3<1273>Q979E2 Thermoplasma volcanium COG0745<>COG4232 - 2 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain ** Thiol:disulfide interchange protein ARCA_HAEIN<192>DSBD_HAEIN Haemophilus influenzae DSD2_PSEAE<163>Q9I103 Pseudomonas aeruginosa COG0747<>COG3335 - 2 - ABC-type dipeptide transport system, periplasmic component ** Transposase and inactivated derivatives AAN70033<491>AAN70034 Pseudomonas putida Q8TSF9<1037>Q8TSF8 Methanosarcina acetivorans COG0840<>COG1396 - 2 - Methyl-accepting chemotaxis protein ** Predicted transcriptional regulators Q97IR2<137>Q97IR1 Clostridium acetobutylicum AAN67869<267>AAN67870 Pseudomonas putida COG1197<>COG4591 - 2 - Transcription-repair coupling factor (superfamily II helicase) ** ABC-type transport system, involved in lipoprotein release, permease component MFD_BUCAI<475>LOLC_BUCAI Buchnera aphidicola APS BAC24245<251>BAC24246 Wigglesworthia brevipalpis Q8ZFR6<270>Q8ZFR5 Yersinia pestis KIM Q8Z7I1<227>Q8XEW4 Salmonella typhi CT18 Q8ZQ01<227>Q8XEW4 Salmonella typhimurium LT2 Q8ZFR6<270>Q8ZFR5 Yersinia pestis CO92 COG2115<>COG4213 - 2 - Xylose isomerase ** ABC-type xylose transport system, periplasmic component Q8XDM3<366>Q8XDM2 Escherichia coli EDL933 AAN82821<276>AAN82822 Escherichia coli O6 XYLA_ECOLI<366>XYLF_ECOLI Escherichia coli K12 Q8XDM3<366>Q8XDM2 Escherichia coli O157 Q8Z9Z2<463>Q8Z9Z1 Yersinia pestis KIM Q8Z9Z2<463>Q8Z9Z1 Yersinia pestis CO92 XYLF_HAEIN<234>XYLA_HAEIN Haemophilus influenzae COG2223<>COG3850 - 2 - Nitrate/nitrite transporter ** Signal transduction histidine kinase, nitrate/nitrite-specific O54041<175>O54040 Pseudomonas aeruginosa Q8ZP36<341>Q8ZP35 Salmonella typhimurium LT2 NARX_ECOLI<339>Q8XDD0 Escherichia coli EDL933 Q8Z7G1<340>Q8Z7G0 Salmonella typhi CT18 NARX_ECOLI<333>AAN42839 Shigella flexneri NARX_ECOLI<339>NARK_ECOLI Escherichia coli K12 NARX_ECOLI<339>Q8XDD0 Escherichia coli O157 COG0637<>COG2252 - 2 - Predicted phosphatase/phosphohexomutase ** Permeases Q8Y524<173>Q8Y523 Listeria monocytogenes Q929C2<173>Q929C1 Listeria innocua Q8Z2P3<43>Q8Z2P2 Salmonella typhi CT18 AAN45189<204>AAN45190 Shigella flexneri Q8XB20<166>Q8XB19 Escherichia coli EDL933 AAM87663<436>Q8Z9T7 Yersinia pestis KIM AAN83069<167>AAN83070 Escherichia coli O6 Q8ZKX8<43>Q8ZKX7 Salmonella typhimurium LT2 Q8Z9T8<493>Q8Z9T7 Yersinia pestis CO92 YIEG_ECOLI<165>YIEH_ECOLI Escherichia coli K12 Q8XB20<166>Q8XB19 Escherichia coli O157 COG0346<>COG1309 - 2 - Lactoylglutathione lyase and related lyases ** Transcriptional regulator Q98IG1<68>Q98IG0 Mesorhizobium loti Q92T19<68>Q92T18 Sinorhizobium meliloti O86342<55>O53680 Mycobacterium tuberculosis CDC1551 O86342<97>O53680 Mycobacterium tuberculosis H37Rv COG0500<>COG2207 - 2 - SAM-dependent methyltransferases ** AraC-type DNA-binding domain-containing proteins Q8UKG9<84>Q8UKG8 Agrobacterium tumefaciens Wash Q8UKG9<84>Q8UKG8 Agrobacterium tumefaciens Cereon Q8VIT2<44>P96245 Mycobacterium tuberculosis CDC1551 P96246<56>P96245 Mycobacterium tuberculosis H37Rv COG0477<>COG0664 - 2 - Permeases of the major facilitator superfamily ** cAMP-binding proteins Q99Y60<7>Q99Y59 Streptococcus pyogenes M1 Q8Y7M4<205>Q8Y7M3 Listeria monocytogenes Q92CF5<198>Q92CF4 Listeria innocua Q8NZH7<1>Q99Y59 Streptococcus pyogenes M18 Q8K5X8<106>Q99Y59 Streptococcus pyogenes M3 AAN00597<157>AAN00598 Streptococcus agalactiae AAN57922<105>AAN57923 Streptococcus mutans COG0376<>COG0583 - 2 - Catalase (peroxidase I) ** Transcriptional regulator Q8U714<185>Q8U715 Agrobacterium tumefaciens Cereon AAN69268<387>AAN69269 Pseudomonas putida Q8U715<209>Q8U714 Agrobacterium tumefaciens Wash Q987S1<82>Q987S0 Mesorhizobium loti COG0583<>COG5383 - 2 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria AAN80310<76>AAN80311 Escherichia coli O6 AAN34078<148>AAN34079 Brucella suis Q92L10<114>Q92L09 Sinorhizobium meliloti YDCI_ECOLI<76>YDCJ_ECOLI Escherichia coli K12 Q8X9V0<76>Q8X5B3 Escherichia coli O157 Q8X432<76>Q8X9V0 Escherichia coli EDL933 Q8YCY8<121>Q8YCY7 Brucella melitensis Q8ZPB1<293>Q8ZPB0 Salmonella typhimurium LT2 AAN43356<76>AAN43357 Shigella flexneri COG0683<>COG1846 - 2 - ABC-type branched-chain amino acid transport systems, periplasmic component ** Transcriptional regulators BAC16836<177>BAC16837 Corynebacterium efficiens BAC45464<144>BAC45465 Bradyrhizobium japonicum BAC47525<934>BAC47527 Bradyrhizobium japonicum BAC51342<153>BAC51343 Bradyrhizobium japonicum COG1024<>COG1414 - 2 - Enoyl-CoA hydratase/carnithine racemase ** Transcriptional regulator Q9I393<242>Q9I392 Pseudomonas aeruginosa Q8YB79<236>Q8YB78 Brucella melitensis BAC53086<44>BAC53087 Bradyrhizobium japonicum AAN33425<260>AAN33426 Brucella suis COG1028<>COG1960 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Acyl-CoA dehydrogenases BAC45402<261>BAC45403 Bradyrhizobium japonicum BAC53164<235>BAC53165 Bradyrhizobium japonicum Q98H02<124>Q98H01 Mesorhizobium loti Q978P8<107>Q978P7 Thermoplasma volcanium COG1653<>COG2207 - 2 - ABC-type sugar transport system, periplasmic component ** AraC-type DNA-binding domain-containing proteins Q8UB66<93>Q8UB65 Agrobacterium tumefaciens Wash Q8XNG3<189>Q8XNG2 Clostridium perfringens Q8UB65<93>Q8UB66 Agrobacterium tumefaciens Cereon O68525<105>Q989G4 Mesorhizobium loti COG0278<>COG0605 - 2 - Glutaredoxin-related protein ** Superoxide dismutase Q8P7V8<122>Q8P7V7 Xanthomonas campestris Q9KQF4<252>Q9KQF3 Vibrio cholerae AAO11429<286>AAO11430 Vibrio vulnificus AAN55896<227>AAN55897 Shewanella oneidensis Q8PJ66<122>Q8PJ65 Xanthomonas axonopodis COG0477<>COG2721 - 2 - Permeases of the major facilitator superfamily ** Altronate dehydratase GARP_ECOLI<375>Q8XAE2 Escherichia coli EDL933 AAN82323<375>AAN82324 Escherichia coli O6 Q9HIE9<388>Q9HIE8 Thermoplasma acidophilum AAN44633<444>AAN44634 Shigella flexneri GARP_ECOLI<375>GARD_ECOLI Escherichia coli K12 GARP_ECOLI<375>Q8XAE2 Escherichia coli O157 COG0591<>COG4230 - 2 - Na+/proline symporter ** Delta 1-pyrroline-5-carboxylate dehydrogenase AAN70513<356>AAN70514 Pseudomonas putida Q8XEG0<423>Q8XAT3 Escherichia coli EDL933 Q8Z7N5<422>Q8Z7N4 Salmonella typhi CT18 PUTA_SALTY<422>PUTP_SALTY Salmonella typhimurium LT2 PUTA_ECOLI<423>PUTP_ECOLI Escherichia coli K12 Q8XEG0<423>Q8XAT3 Escherichia coli O157 COG0850<>COG3100 - 2 - Septum formation inhibitor ** Uncharacterized protein conserved in bacteria MINC_PASMU<94>Q9CNI7 Pasteurella multocida Q8ZES3<721>MINC_YERPE Yersinia pestis KIM Q8Z681<87>MINC_SALTY Salmonella typhi CT18 Q8ZP11<87>MINC_SALTY Salmonella typhimurium LT2 AAO08669<176>AAO08670 Vibrio vulnificus AAN55605<124>AAN55606 Shewanella oneidensis COG1292<>COG1309 - 2 - Choline-glycine betaine transporter ** Transcriptional regulator Q8X6C3<129>BETT_ECOLI Escherichia coli EDL933 AAN78914<111>AAN78915 Escherichia coli O6 Q9HTJ0<333>Q9HTI9 Pseudomonas aeruginosa Q8ZGV8<365>Q8ZGV7 Yersinia pestis CO92 BETI_ECOLI<129>BETT_ECOLI Escherichia coli K12 Q8X6C3<129>BETT_ECOLI Escherichia coli O157 COG0431<>COG0583 - 2 - Predicted flavoprotein ** Transcriptional regulator Q8Y4T1<243>Q8Y4T0 Listeria monocytogenes Q928T7<242>Q928T6 Listeria innocua Q8PDM0<110>Q8PDL9 Xanthomonas campestris Q8PQJ0<191>Q8PQI9 Xanthomonas axonopodis COG0079<>COG0546 - 2 - Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase ** Predicted phosphatases BAC18946<2>BAC18947 Corynebacterium efficiens YM31_MYCTU<579>YM32_MYCTU Mycobacterium tuberculosis H37Rv COG0124<>COG0652 - 2 - Histidyl-tRNA synthetase ** Peptidyl-prolyl cis-trans isomerase (rotamase) BAC18573<689>BAC18575 Corynebacterium efficiens SYH_MYCTU<722>PPIB_MYCTU Mycobacterium tuberculosis CDC1551 COG0177<>COG0664 - 2 - Predicted EndoIII-related endonuclease ** cAMP-binding proteins END3_MYCLE<426>Q9CB91 Mycobacterium leprae BAC17097<533>BAC17099 Corynebacterium efficiens COG0253<>COG1965 - 2 - Diaminopimelate epimerase ** Protein implicated in iron transport, frataxin homolog DAPF_BUCAI<125>CYAY_BUCAI Buchnera aphidicola APS DAPF_BUCAP<120>CYAY_BUCAP Buchnera aphidicola Schiz CYAY_ECOLI<700>DAPF_ECOLI Escherichia coli K12 CYAY_ECO57<700>DAPF_ECO57 Escherichia coli O157 COG0361<>COG1088 - 2 - Translation initiation factor 1 (IF-1) ** dTDP-D-glucose 4,6-dehydratase IF1_MYCTU<515>Q9CBH7 Mycobacterium leprae Q9CM15<133>IF1_PASMU Pasteurella multocida COG0373<>COG0560 - 2 - Glutamyl-tRNA reductase ** Phosphoserine phosphatase HEM1_MYCLE<1102>Y505_MYCLE Mycobacterium leprae BAC17244<416>BAC17245 Corynebacterium efficiens COG0456<>NOG10175 - 2 - Acetyltransferases ** non supervised orthologous group Q8NMJ7<60>Q8NMJ6 Corynebacterium glutamicum Q9CBC9<917>Q50040 Mycobacterium leprae COG0477<>COG1335 - 2 - Permeases of the major facilitator superfamily ** Amidases related to nicotinamidase Q97YW8<598>Q97YW7 Sulfolobus solfataricus Q8XEB8<315>Q8XEB7 Escherichia coli EDL933 AAN42489<315>AAN42490 Shigella flexneri YCAC_ECOLI<314>YCAD_ECOLI Escherichia coli K12 Q8XEB8<315>Q8XEB7 Escherichia coli O157 COG0477<>COG1573 - 2 - Permeases of the major facilitator superfamily ** Uracil-DNA glycosylase Q8TNM1<1427>Q8TNM0 Methanosarcina acetivorans YC58_MYCTU<92>YC59_MYCTU Mycobacterium tuberculosis CDC1551 COG0483<>COG0568 - 2 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family ** DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) BAC18612<1235>BAC18614 Corynebacterium efficiens Q59532<934>SUHB_MYCLE Mycobacterium leprae COG0583<>NOG25859 - 2 - Transcriptional regulator ** non supervised orthologous group AAN67308<76>AAN67309 Pseudomonas putida Q8PBD3<130>Q8PBD2 Xanthomonas campestris COG0596<>COG0789 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Predicted transcriptional regulators Q9I0C5<233>Q9I0C4 Pseudomonas aeruginosa Q8PQK5<192>Q8PQK4 Xanthomonas axonopodis COG0603<>COG1132 - 2 - Predicted PP-loop superfamily ATPase ** ABC-type multidrug transport system, ATPase and permease components Q9ZCM9<566>Q9ZCM8 Rickettsia prowazekii Y463_BUCAP<231>MDLA_BUCAP Buchnera aphidicola Schiz COG0640<>COG0730 - 2 - Predicted transcriptional regulators ** Predicted permeases O58648<139>O58647 Pyrococcus horikoshii Q9I6L2<94>Q9I6L1 Pseudomonas aeruginosa COG0642<>COG1129 - 2 - Signal transduction histidine kinase ** ABC-type sugar transport system, ATPase component Q8ZA53<189>Q8ZA54 Yersinia pestis KIM Q8X5Q4<81>Q8X5Q3 Escherichia coli EDL933 Q8ZA54<189>Q8ZA53 Yersinia pestis CO92 Q9CL63<442>Q9CL62 Pasteurella multocida Q8X5Q4<114>Q8X5Q3 Escherichia coli O157 COG1221<>COG2513 - 2 - Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ** PEP phosphonomutase and related enzymes Q8X698<239>Q8X695 Escherichia coli EDL933 AAN78929<239>AAN78930 Escherichia coli O6 Q8PBT9<146>Q8PBT8 Xanthomonas campestris Q8Z906<266>Q8Z905 Salmonella typhi CT18 PRPR_SALTY<265>PRPB_SALTY Salmonella typhimurium LT2 PRPR_ECOLI<239>PRPB_ECOLI Escherichia coli K12 Q8X698<239>Q8X695 Escherichia coli O157 COG2207<>COG2807 - 2 - AraC-type DNA-binding domain-containing proteins ** Cyanate permease Q8XDT3<97>Q8XDT0 Escherichia coli EDL933 AAN80654<97>AAN80655 Escherichia coli O6 Q8Z6E4<101>Q8Z6E3 Salmonella typhi CT18 YEAM_ECOLI<97>YEAN_ECOLI Escherichia coli K12 Q8XDT3<97>Q8XDT0 Escherichia coli O157 Q8ZPW9<101>Q8ZPW8 Salmonella typhimurium LT2 Q8PKE1<97>Q8PKE0 Xanthomonas axonopodis COG2431<>COG3593 - 2 - Predicted membrane protein ** Predicted ATP-dependent endonuclease of the OLD family Q8Z828<201>Q8Z827 Salmonella typhi CT18 Q8ZQE7<202>Q8ZQE6 Salmonella typhimurium LT2 Q8ZGE0<353>Q8ZGD9 Yersinia pestis CO92 Q9CNG6<69>Q9CNG5 Pasteurella multocida AAM86368<329>Q8ZGE0 Yersinia pestis KIM COG2610<>COG3265 - 2 - H+/gluconate symporter and related permeases ** Gluconate kinase Q8ZA64<217>Q8ZA65 Yersinia pestis KIM Q9KV71<154>Q9KV70 Vibrio cholerae Q8ZA65<217>Q8ZA64 Yersinia pestis CO92 AAO09578<153>AAO09579 Vibrio vulnificus Q9CMM6<253>Q9CMM5 Pasteurella multocida NOG04171<>NOG08647 - 2 - non supervised orthologous group ** non supervised orthologous group Q8NS62<36>Q8NS61 Corynebacterium glutamicum Q9CBE2<98>Q9CBE1 Mycobacterium leprae COG1028<>COG1349 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Transcriptional regulators of sugar metabolism Q8UA89<201>Q8UA88 Agrobacterium tumefaciens Wash Q92S13<201>Q92S12 Sinorhizobium meliloti Q92LM7<168>Q92LM6 Sinorhizobium meliloti Q9KEP9<231>Q9KEP8 Bacillus halodurans Q8UA88<108>Q8UA89 Agrobacterium tumefaciens Cereon Q98B67<185>Q98B66 Mesorhizobium loti COG0467<>COG0784 - 2 - RecA-superfamily ATPases implicated in signal transduction ** CheY-like receiver Q8PA40<148>Q8PA39 Xanthomonas campestris BAC47441<301>BAC47442 Bradyrhizobium japonicum Q8PLW9<270>Q8PLW8 Xanthomonas axonopodis COG0531<>COG0569 - 2 - Amino acid transporters ** K+ transport systems, NAD-binding component AAN00453<206>AAN00454 Streptococcus agalactiae O07192<135>O07193 Mycobacterium tuberculosis CDC1551 O07192<135>O07193 Mycobacterium tuberculosis H37Rv COG0583<>COG2367 - 2 - Transcriptional regulator ** Beta-lactamase class A Q8P6D1<101>Q8P6D0 Xanthomonas campestris Q92Y19<103>Q92Y18 Sinorhizobium meliloti Q8PHT7<101>Q8PHT6 Xanthomonas axonopodis COG0596<>COG1058 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA Q8VJU6<17>CINA_MYCTU Mycobacterium tuberculosis CDC1551 O07732<29>CINA_MYCTU Mycobacterium tuberculosis H37Rv Q98NH1<164>Q98NH0 Mesorhizobium loti COG0673<>COG3386 - 2 - Predicted dehydrogenases and related proteins ** Gluconolactonase Q8U8X4<850>Q8U8X6 Agrobacterium tumefaciens Cereon Q8PCC0<32>Q8PCB9 Xanthomonas campestris Q8PP01<141>Q8PP00 Xanthomonas axonopodis COG1012<>COG1680 - 2 - NAD-dependent aldehyde dehydrogenases ** Beta-lactamase class C and other penicillin binding proteins BAC49263<545>BAC49264 Bradyrhizobium japonicum Q8VJY2<366>P71989 Mycobacterium tuberculosis CDC1551 P71988<432>P71989 Mycobacterium tuberculosis H37Rv COG1028<>COG1804 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** Predicted acyl-CoA transferases/carnitine dehydratase BAC48293<362>BAC48295 Bradyrhizobium japonicum P95150<96>Q8VJV5 Mycobacterium tuberculosis CDC1551 P95150<174>P95149 Mycobacterium tuberculosis H37Rv COG1309<>COG2199 - 2 - Transcriptional regulator ** GGDEF domain Q8P5K7<207>Q8P5K6 Xanthomonas campestris Q92W41<518>Q92W40 Sinorhizobium meliloti Q8PH02<268>Q8PH01 Xanthomonas axonopodis COG0438<>COG1089 - 2 - Glycosyltransferase ** GDP-D-mannose dehydratase Q8YBP8<198>Q9XDD8 Brucella melitensis Q8TRK1<390>Q8TRK0 Methanosarcina acetivorans AAN33615<1535>AAN33616 Brucella suis COG0492<>COG1959 - 2 - Thioredoxin reductase ** Predicted transcriptional regulator Q8UIQ6<155>Q8UIQ5 Agrobacterium tumefaciens Wash Q8UIQ6<155>Q8UIQ5 Agrobacterium tumefaciens Cereon Q9HWL2<81>Q9HWL1 Pseudomonas aeruginosa COG0500<>COG1278 - 2 - SAM-dependent methyltransferases ** Cold shock proteins BAC47211<291>BAC47212 Bradyrhizobium japonicum BAC45324<408>BAC45325 Bradyrhizobium japonicum Q9CMZ5<348>Q9CMZ4 Pasteurella multocida COG0583<>COG1064 - 2 - Transcriptional regulator ** Zn-dependent alcohol dehydrogenases Q8NTT1<114>Q8NTT0 Corynebacterium glutamicum Q8UK83<176>Q8UK82 Agrobacterium tumefaciens Wash Q8UK83<149>Q8UK82 Agrobacterium tumefaciens Cereon COG0583<>COG1804 - 2 - Transcriptional regulator ** Predicted acyl-CoA transferases/carnitine dehydratase BAC45961<107>BAC45962 Bradyrhizobium japonicum BAC17535<107>BAC17536 Corynebacterium efficiens Q8YB25<180>Q8YB24 Brucella melitensis COG0583<>COG3803 - 2 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria Q9HZX0<46>Q9HZW9 Pseudomonas aeruginosa Q92YJ4<105>Q92YJ3 Sinorhizobium meliloti Q92PM8<95>Q92PM7 Sinorhizobium meliloti COG0655<>COG1309 - 2 - Multimeric flavodoxin WrbA ** Transcriptional regulator Q8U897<553>Q8U899 Agrobacterium tumefaciens Cereon Q8U899<583>Q8U897 Agrobacterium tumefaciens Wash Q8TPY2<1972>Q8TPY1 Methanosarcina acetivorans COG0747<>COG0864 - 2 - ABC-type dipeptide transport system, periplasmic component ** Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Q9AL82<267>NIKR_BRUSU Brucella suis NIKR_BRUME<210>Q8YCP1 Brucella melitensis AAN68945<88>AAN68946 Pseudomonas putida COG0747<>COG2186 - 2 - ABC-type dipeptide transport system, periplasmic component ** Transcriptional regulators Q8U8A6<361>Q8U8A7 Agrobacterium tumefaciens Cereon Q8NMC7<299>Q8NMC6 Corynebacterium glutamicum Q8U8A7<286>Q8U8A6 Agrobacterium tumefaciens Wash COG1070<>COG1349 - 2 - Sugar (pentulose and hexulose) kinases ** Transcriptional regulators of sugar metabolism Q97N88<176>Q97N87 Streptococcus pneumoniae TIGR4 AAL00775<131>AAL00776 Streptococcus pneumoniae R6 Q8XNL7<192>Q8XNL6 Clostridium perfringens COG1129<>COG1879 - 2 - ABC-type sugar transport system, ATPase component ** ABC-type sugar transport system, periplasmic component Q92UP2<210>Q926F9 Sinorhizobium meliloti Q98K07<450>Q98K06 Mesorhizobium loti Q9CLB4<127>Q9CLB3 Pasteurella multocida COG1309<>COG4122 - 2 - Transcriptional regulator ** Predicted O-methyltransferase Q9I3U2<93>Q9I3U1 Pseudomonas aeruginosa BAC49494<98>BAC49495 Bradyrhizobium japonicum Q98B82<93>Q98B81 Mesorhizobium loti COG1522<>COG2334 - 2 - Transcriptional regulators ** Putative homoserine kinase type II (protein kinase fold) Q8YD31<173>Q8YD30 Brucella melitensis Q92MD2<220>Q92MD1 Sinorhizobium meliloti AAN68965<144>AAN68966 Pseudomonas putida COG1802<>COG1914 - 2 - Transcriptional regulators ** Mn2+ and Fe2+ transporters of the NRAMP family Q8U922<237>Q8U921 Agrobacterium tumefaciens Wash BAC17877<65>BAC17878 Corynebacterium efficiens Q8U921<165>Q8U922 Agrobacterium tumefaciens Cereon COG0488<>COG0513 - 2 - ATPase components of ABC transporters with duplicated ATPase domains ** Superfamily II DNA and RNA helicases O34512<173>O34750 Bacillus subtilis Q8P8G1<101>Q8P8G0 Xanthomonas campestris Q8PJY8<102>Q8PJY7 Xanthomonas axonopodis COG1012<>COG2508 - 2 - NAD-dependent aldehyde dehydrogenases ** Regulator of polyketide synthase expression P94359<184>P94358 Bacillus subtilis O50442<85>O50443 Mycobacterium tuberculosis CDC1551 O50442<85>O50443 Mycobacterium tuberculosis H37Rv COG0582<>COG1396 - 2 - Integrase ** Predicted transcriptional regulators Q99ZK3<469>Q99ZK2 Streptococcus pyogenes M1 Q8P0Y8<463>Q8P0Y7 Streptococcus pyogenes M18 Q99ZK3<470>Q99ZK2 Streptococcus pyogenes M3 Q8PMD1<1985>Q8PMC9 Xanthomonas axonopodis COG0288<>COG0583 - 2 - Carbonic anhydrase ** Transcriptional regulator Q9I262<115>Q9I261 Pseudomonas aeruginosa Q8X4M5<110>CYNT_ECOLI Escherichia coli EDL933 CYNR_ECOLI<109>CYNT_ECOLI Escherichia coli K12 Q8X4M5<110>CYNT_ECOLI Escherichia coli O157 COG0477<>COG3328 - 2 - Permeases of the major facilitator superfamily ** Transposase and inactivated derivatives O68779<58>AAM86136 Yersinia pestis KIM Q8VIQ5<274>O05301 Mycobacterium tuberculosis CDC1551 TRA1_MYCTU<337>O05301 Mycobacterium tuberculosis H37Rv COG0583<>COG2910 - 2 - Transcriptional regulator ** Putative NADH-flavin reductase AAN67014<184>AAN67015 Pseudomonas putida AAN53843<138>AAN53844 Shewanella oneidensis Q9KKP8<100>Q9KKP7 Vibrio cholerae AAO08296<262>AAO08297 Vibrio vulnificus COG0782<>COG2183 - 2 - Transcription elongation factor ** Transcriptional accessory protein GREB_VIBCH<245>Q9KNL6 Vibrio cholerae AAO09362<248>AAO09363 Vibrio vulnificus Q8ZJH3<534>GREB_YERPE Yersinia pestis CO92 YHGF_HAEIN<96>GREB_HAEIN Haemophilus influenzae COG1021<>COG3433 - 2 - Peptide arylation enzymes ** Aryl carrier domain AAO07763<226>AAO07764 Vibrio vulnificus P71717<99>P71716 Mycobacterium tuberculosis CDC1551 P71717<99>P71716 Mycobacterium tuberculosis H37Rv COG1484<>COG2963 - 2 - DNA replication protein ** Transposase and inactivated derivatives BAC18038<403>BAC18039 Corynebacterium efficiens AAN42947<1106>AAN42948 Shigella flexneri Q9AFW7<38>Q9AFW6 Shigella flexneri Q99Q67<252>Q8VSK0 Shigella flexneri COG2963<>COG3328 - 2 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives BAC18757<162>BAC18758 Corynebacterium efficiens AAN54098<589>AAN54099 Shewanella oneidensis AAN83598<272>AAN83599 Escherichia coli O6 Q8XC63<44>O85620 Escherichia coli O157 COG4591<>NOG25122 - 2 - ABC-type transport system, involved in lipoprotein release, permease component ** non supervised orthologous group Q9KQW4<164>Q9KQW3 Vibrio cholerae AAN67766<94>AAN67767 Pseudomonas putida AAO10467<350>AAO10468 Vibrio vulnificus AAN55296<95>AAN55297 Shewanella oneidensis COG1167<>COG2240 - 2 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs ** Pyridoxal/pyridoxine/pyridoxamine kinase AAN58657<98>AAN58658 Streptococcus mutans Q99ZJ3<90>Q99ZJ2 Streptococcus pyogenes M1 Q8P0X9<90>Q8P0X8 Streptococcus pyogenes M18 Q8K7E4<90>Q8K7E3 Streptococcus pyogenes M3 Q8Z4W1<83>Q8Z4W0 Salmonella typhi CT18 PDXK_SALTY<83>PTSJ_SALTY Salmonella typhimurium LT2 COG0640<>COG1853 - 2 - Predicted transcriptional regulators ** Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family Q9HI98<171>Q9HI97 Thermoplasma acidophilum Q9KFT6<92>Q9KFT5 Bacillus halodurans P96682<90>P96683 Bacillus subtilis COG0477<>COG4264 - 2 - Permeases of the major facilitator superfamily ** Siderophore synthetase component AAO05412<103>AAO05413 Staphylococcus epidermidis Q99S86<102>Q99S85 Staphylococcus aureus Mu50 Q99S86<102>Q99S85 Staphylococcus aureus N315 AAM86928<251>AAM86930 Yersinia pestis KIM Q8NVD3<102>Q8NVD2 Staphylococcus aureus MW2 AAN45160<70>AAN45161 Shigella flexneri AAN82075<73>AAN82076 Escherichia coli O6 COG0437<>COG1526 - 2 - Fe-S-cluster-containing hydrogenase components 1 ** Uncharacterized protein required for formate dehydrogenase activity Q8Z9X8<3224>AAM87622 Yersinia pestis KIM Q8Z9X8<3257>Q8Z9X7 Yersinia pestis CO92 FDHD_HAEIN<3359>FDXH_HAEIN Haemophilus influenzae COG0477<>COG3203 - 2 - Permeases of the major facilitator superfamily ** Outer membrane protein (porin) Q8ZGR2<1094>Q8ZGR1 Yersinia pestis CO92 Q8ZGR1<1095>Q8ZGR2 Yersinia pestis KIM AAN68310<68>AAN68311 Pseudomonas putida COG0517<>COG5007 - 2 - CBS domain ** Predicted transcriptional regulator, BolA superfamily BAC24473<583>BAC24474 Wigglesworthia brevipalpis Q9PDG6<62>Q9PDG5 Xylella fastidiosa COG0642<>COG3437 - 2 - Signal transduction histidine kinase ** Response regulator containing a CheY-like receiver domain and an HD-GYP domain Q9I0R5<78>Q9I0R4 Pseudomonas aeruginosa AAO07892<138>AAO07893 Vibrio vulnificus AAN56976<228>AAN56977 Shewanella oneidensis COG1012<>COG3970 - 2 - NAD-dependent aldehyde dehydrogenases ** Fumarylacetoacetate (FAA) hydrolase family protein Q8ZGK1<352>Q8ZGK2 Yersinia pestis KIM Q97UA1<74>Q97UA0 Sulfolobus solfataricus Q8ZGK2<352>Q8ZGK1 Yersinia pestis CO92 COG1280<>COG2207 - 2 - Putative threonine efflux protein ** AraC-type DNA-binding domain-containing proteins Q9KKV0<201>Q9KKU9 Vibrio cholerae AAO07517<231>AAO07518 Vibrio vulnificus AAN68630<74>AAN68631 Pseudomonas putida COG2333<>COG3216 - 2 - Predicted hydrolase (metallo-beta-lactamase superfamily) ** Uncharacterized protein conserved in bacteria Q9HZM0<131>Q9HZL9 Pseudomonas aeruginosa AAN55825<45>AAN55826 Shewanella oneidensis AAO10471<36>AAO10472 Vibrio vulnificus COG0006<>COG1396 - 2 - Xaa-Pro aminopeptidase ** Predicted transcriptional regulators Q9HVS3<168>Q9HVS2 Pseudomonas aeruginosa Q981H4<207>Q981H3 Mesorhizobium loti COG0251<>COG0697 - 2 - Putative translation initiation inhibitor, yjgF family ** Permeases of the drug/metabolite transporter (DMT) superfamily BAC49943<147>BAC49944 Bradyrhizobium japonicum BAC18930<57>BAC18931 Corynebacterium efficiens COG0431<>COG1733 - 2 - Predicted flavoprotein ** Predicted transcriptional regulators Q98I27<92>Q98I26 Mesorhizobium loti Q9CKY0<148>Q9CKX9 Pasteurella multocida COG0454<>COG0673 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Predicted dehydrogenases and related proteins Q8Z238<467>Q8Z237 Salmonella typhi CT18 Q8X6V5<346>Q8X6V2 Escherichia coli EDL933 Q92QY5<115>Q92QY4 Sinorhizobium meliloti Q8ZLG2<469>Q8ZLG1 Salmonella typhimurium LT2 AAN44922<510>AAN44923 Shigella flexneri YHHX_ECOLI<333>YHHY_ECOLI Escherichia coli K12 Q8X6V5<334>Q8X6V2 Escherichia coli O157 COG0454<>NOG05908 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** non supervised orthologous group Q8UIQ0<61>Q8U5N3 Agrobacterium tumefaciens Cereon AAN66519<116>AAN66520 Pseudomonas putida COG0477<>COG0495 - 2 - Permeases of the major facilitator superfamily ** Leucyl-tRNA synthetase BAC19658<1558>BAC19660 Corynebacterium efficiens AAN00916<377>AAN00917 Streptococcus agalactiae COG0477<>COG1136 - 2 - Permeases of the major facilitator superfamily ** ABC-type antimicrobial peptide transport system, ATPase component Q97LV2<406>Q97LV1 Clostridium acetobutylicum BAC46267<146>BAC46268 Bradyrhizobium japonicum COG0488<>COG1309 - 2 - ATPase components of ABC transporters with duplicated ATPase domains ** Transcriptional regulator Q9HVJ1<493>Q9HVJ0 Pseudomonas aeruginosa Q92XG5<111>Q92XG4 Sinorhizobium meliloti COG0500<>COG0789 - 2 - SAM-dependent methyltransferases ** Predicted transcriptional regulators Q9HU69<84>Q9HU68 Pseudomonas aeruginosa Q98BY3<84>Q98BY2 Mesorhizobium loti COG0511<>COG0583 - 2 - Biotin carboxyl carrier protein ** Transcriptional regulator Q8U828<764>Q8U827 Agrobacterium tumefaciens Wash Q9I3U5<205>Q9I3U4 Pseudomonas aeruginosa COG0583<>COG0687 - 2 - Transcriptional regulator ** Spermidine/putrescine-binding periplasmic protein AAN67807<94>AAN67808 Pseudomonas putida BAC52462<28>BAC52463 Bradyrhizobium japonicum COG0583<>COG1574 - 2 - Transcriptional regulator ** Predicted metal-dependent hydrolase with the TIM-barrel fold Q9I135<123>Q9I134 Pseudomonas aeruginosa Q930Z5<183>Q930Z4 Sinorhizobium meliloti COG0583<>COG1893 - 2 - Transcriptional regulator ** Ketopantoate reductase AAN68605<94>AAN68606 Pseudomonas putida BAC51661<104>BAC51662 Bradyrhizobium japonicum COG0583<>COG2070 - 2 - Transcriptional regulator ** Dioxygenases related to 2-nitropropane dioxygenase Q9HWH9<108>Q9HWH8 Pseudomonas aeruginosa BAC50357<98>BAC50358 Bradyrhizobium japonicum COG0583<>COG2175 - 2 - Transcriptional regulator ** Probable taurine catabolism dioxygenase AAN70041<246>AAN70042 Pseudomonas putida BODG_RHILO<119>Q98KJ9 Mesorhizobium loti COG0583<>COG3842 - 2 - Transcriptional regulator ** ABC-type spermidine/putrescine transport systems, ATPase components Q9I6T2<231>Q9I6T1 Pseudomonas aeruginosa BAC52093<164>BAC52094 Bradyrhizobium japonicum COG0637<>COG3436 - 2 - Predicted phosphatase/phosphohexomutase ** Transposase and inactivated derivatives AAN68720<62>AAN68721 Pseudomonas putida BAC46842<224>BAC46844 Bradyrhizobium japonicum COG0667<>COG0673 - 2 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) ** Predicted dehydrogenases and related proteins Q97UJ7<461>Q97UJ6 Sulfolobus solfataricus Q92SS1<123>Q92SS0 Sinorhizobium meliloti COG0715<>COG1309 - 2 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components ** Transcriptional regulator AAN69128<272>AAN69129 Pseudomonas putida BAC49474<56>BAC49475 Bradyrhizobium japonicum COG0834<>COG1396 - 2 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain ** Predicted transcriptional regulators Q9HYY0<104>Q9HYX9 Pseudomonas aeruginosa BAC47488<164>BAC47489 Bradyrhizobium japonicum COG2188<>COG2222 - 2 - Transcriptional regulators ** Predicted phosphosugar isomerases Q92LS6<219>Q92LS5 Sinorhizobium meliloti Q97DH6<181>Q97DH5 Clostridium acetobutylicum COG0523<>COG1846 - 2 - Putative GTPases (G3E family) ** Transcriptional regulators Q98CG8<147>Q98CG7 Mesorhizobium loti Q99VT5<227>Q99VT4 Staphylococcus aureus Mu50 Q99VT5<227>Q99VT4 Staphylococcus aureus N315 Q8U7E5<900>Q8U7E7 Agrobacterium tumefaciens Cereon Q99VT5<227>Q8NXQ1 Staphylococcus aureus MW2 COG0524<>COG1653 - 2 - Sugar kinases, ribokinase family ** ABC-type sugar transport system, periplasmic component Q8UB51<263>Q8UB52 Agrobacterium tumefaciens Cereon Q9HH01<234>O51923 Pyrococcus furiosus Q8UB52<302>Q8UB51 Agrobacterium tumefaciens Wash COG0642<>COG0845 - 2 - Signal transduction histidine kinase ** Membrane-fusion protein AAN29223<285>AAN29225 Brucella suis Q8PQJ7<161>Q8PQJ6 Xanthomonas axonopodis Q8YF76<528>Q8YF74 Brucella melitensis COG0431<>COG2141 - 2 - Predicted flavoprotein ** Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Q8NRN4<216>Q8NRN3 Corynebacterium glutamicum BAC15034<512>BAC15035 Oceanobacillus iheyhensis COG0454<>COG0457 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** TPR repeat O32293<111>RAPG_BACSU Bacillus subtilis Q97G79<345>Q97G78 Clostridium acetobutylicum COG0477<>COG1167 - 2 - Permeases of the major facilitator superfamily ** Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Q9HTS2<163>Q9HTS1 Pseudomonas aeruginosa Q9K9F3<295>Q9K9F2 Bacillus halodurans COG0500<>COG0793 - 2 - SAM-dependent methyltransferases ** Periplasmic protease O34666<153>O34954 Bacillus subtilis TRI_THEVO<91>Q97A94 Thermoplasma volcanium COG0534<>COG0789 - 2 - Na+-driven multidrug efflux pump ** Predicted transcriptional regulators Q9K5P3<81>Q9K5P2 Bacillus halodurans Q97DM9<92>Q97DM8 Clostridium acetobutylicum COG0596<>COG1357 - 2 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ** Uncharacterized low-complexity proteins O06733<206>O06734 Bacillus subtilis Q8PU05<496>Q8PU04 Methanosarcina mazei COG0642<>COG3547 - 2 - Signal transduction histidine kinase ** Transposase and inactivated derivatives Q9KCM3<117>Q9JWR2 Bacillus halodurans Q8PRR4<1590>Q8PVN2 Methanosarcina mazei COG0642<>COG3594 - 2 - Signal transduction histidine kinase ** Fucose 4-O-acetylase and related acetyltransferases Q8XNX5<367>Q8XNX4 Clostridium perfringens O31660<253>O31661 Bacillus subtilis COG1670<>COG2202 - 2 - Acetyltransferases, including N-acetylases of ribosomal proteins ** PAS/PAC domain Q92AW2<191>Q92AW1 Listeria innocua Q9HYX1<266>Q9HYX0 Pseudomonas aeruginosa COG2207<>COG3942 - 2 - AraC-type DNA-binding domain-containing proteins ** Surface antigen AAO05512<572>Q9KJT6 Staphylococcus epidermidis AAN58684<185>AAN58685 Streptococcus mutans Q99RX5<610>Q99RX4 Staphylococcus aureus Mu50 Q99RX5<610>Q99RX4 Staphylococcus aureus N315 Q8NV84<610>Q8NV83 Staphylococcus aureus MW2 COG0028<>COG0477 - 2 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] ** Permeases of the major facilitator superfamily Q8NMG5<461>Q8NMG4 Corynebacterium glutamicum AAN45229<61>AAN45230 Shigella flexneri COG0161<>COG1012 - 2 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase ** NAD-dependent aldehyde dehydrogenases Q9HTP2<230>Q9HTP1 Pseudomonas aeruginosa AAN56489<282>AAN56490 Shewanella oneidensis COG0437<>COG0642 - 2 - Fe-S-cluster-containing hydrogenase components 1 ** Signal transduction histidine kinase Q9Z4S8<164>Q8ZPP6 Salmonella typhimurium LT2 Q9CMT5<148>Q9CMT4 Pasteurella multocida COG0477<>COG3385 - 2 - Permeases of the major facilitator superfamily ** Transposase and inactivated derivatives Q97UY4<281>Q97UY3 Sulfolobus solfataricus INSG_ECOLI<567>YJHB_ECOLI Escherichia coli K12 COG0582<>COG4584 - 2 - Integrase ** Transposase and inactivated derivatives Q8TP88<115>Q8TH55 Methanosarcina acetivorans P74993<70>AAM85787 Yersinia pestis KIM COG0583<>COG1454 - 2 - Transcriptional regulator ** Alcohol dehydrogenase, class IV AAN68257<143>AAN68258 Pseudomonas putida AAN53079<336>AAN53080 Shewanella oneidensis COG0583<>COG2015 - 2 - Transcriptional regulator ** Alkyl sulfatase and related hydrolases Q9I5J0<103>Q9I5I9 Pseudomonas aeruginosa AAN54662<124>AAN54663 Shewanella oneidensis COG0583<>COG2329 - 2 - Transcriptional regulator ** Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides Q9I1K6<87>Q9I1K5 Pseudomonas aeruginosa Q9S457<1879>Q935H8 Salmonella typhi CT18 COG0583<>COG3238 - 2 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria AAN53454<235>AAN53455 Shewanella oneidensis Q9HYS5<89>Q9HYS4 Pseudomonas aeruginosa COG0739<>NOG27115 - 2 - Membrane proteins related to metalloendopeptidases ** non supervised orthologous group Q9LCT4<147>Q9HW03 Pseudomonas aeruginosa AAN57184<28>AAN57185 Shewanella oneidensis COG1145<>COG3850 - 2 - Ferredoxin ** Signal transduction histidine kinase, nitrate/nitrite-specific Q9KLR7<158>Q9KLR6 Vibrio cholerae Q9CKM1<196>Q9CKM0 Pasteurella multocida COG1157<>NOG11757 - 2 - Flagellar biosynthesis/type III secretory pathway ATPase ** non supervised orthologous group Q9I330<191>O30531 Pseudomonas aeruginosa YOPN_YERPE<198>O68695 Yersinia pestis CO92 COG1496<>COG4105 - 2 - Uncharacterized conserved protein ** DNA uptake lipoprotein AAN56567<1053>AAN56568 Shewanella oneidensis AAN66248<1107>AAN66249 Pseudomonas putida COG1638<>COG3010 - 2 - TRAP-type C4-dicarboxylate transport system, periplasmic component ** Putative N-acetylmannosamine-6-phosphate epimerase AAO07665<361>AAO07666 Vibrio vulnificus YHCJ_HAEIN<350>Y146_HAEIN Haemophilus influenzae COG2801<>COG2932 - 2 - Transposase and inactivated derivatives ** Predicted transcriptional regulator Q9JZF4<546>Q9JZF3 Neisseria meningitidis B AAN53719<407>AAN53721 Shewanella oneidensis COG4197<>NOG13753 - 2 - Uncharacterized protein conserved in bacteria, prophage-related ** non supervised orthologous group Q8X8C5<125>Q8X8C4 Escherichia coli EDL933 Q9PG02<59>Q9PG01 Xylella fastidiosa RACR_ECOLI<124>YDAS_ECOLI Escherichia coli K12 Q8X8C5<125>Q8X8C4 Escherichia coli O157 COG1396<>COG2963 - 2 - Predicted transcriptional regulators ** Transposase and inactivated derivatives Q8Y974<231>Q8Y973 Listeria monocytogenes Q92DZ8<235>Q92DZ7 Listeria innocua Q8NKZ0<170>Q8PKJ7 Xanthomonas axonopodis COG1263<>COG1737 - 2 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ** Transcriptional regulators AAO05538<198>AAO05539 Staphylococcus epidermidis Q99RV0<330>Q99RU9 Staphylococcus aureus Mu50 Q99RV0<330>Q99RU9 Staphylococcus aureus N315 Q99RV0<330>Q99RU9 Staphylococcus aureus MW2 AAN43986<863>AAN43988 Shigella flexneri COG0500<>COG2199 - 2 - SAM-dependent methyltransferases ** GGDEF domain Q8UB11<307>Q8UB10 Agrobacterium tumefaciens Wash Q8UB10<283>Q8UB11 Agrobacterium tumefaciens Cereon Q98IQ7<190>Q98IQ6 Mesorhizobium loti AAN55468<151>AAN55469 Shewanella oneidensis COG1284<>COG1307 - 2 - Uncharacterized conserved protein ** Uncharacterized protein conserved in bacteria Q97QT8<142>Q97QT7 Streptococcus pneumoniae TIGR4 AAK99822<142>AAK99823 Streptococcus pneumoniae R6 P70945<138>YITT_BACSU Bacillus subtilis BAC13144<108>BAC13145 Oceanobacillus iheyhensis COG2188<>COG2723 - 2 - Transcriptional regulators ** Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase Q8Y9Z6<157>Q8Y9Z5 Listeria monocytogenes Q92ER8<157>Q92ER7 Listeria innocua Q97NK6<158>Q97NK5 Streptococcus pneumoniae TIGR4 AAL00635<116>AAL00636 Streptococcus pneumoniae R6 COG0001<>COG0316 - 2 - Glutamate-1-semialdehyde aminotransferase ** Uncharacterized conserved protein BAC24219<150>BAC24220 Wigglesworthia brevipalpis GSA_VIBCH<284>Q9KU96 Vibrio cholerae AAO10094<302>AAO10095 Vibrio vulnificus COG0688<>COG1949 - 2 - Phosphatidylserine decarboxylase ** Oligoribonuclease (3->5 exoribonuclease) BAC24574<259>BAC24575 Wigglesworthia brevipalpis DPSD_ECOLI<1127>ORN_ECOLI Escherichia coli O6 DPSD_ECOLI<1127>AAN45737 Shigella flexneri COG1528<>NOG07474 - 2 - Ferritin-like protein ** non supervised orthologous group BAC24361<58>BAC24362 Wigglesworthia brevipalpis AAM86080<251>AAM86081 Yersinia pestis KIM Q8ZFD2<401>Q8ZFD1 Yersinia pestis CO92 COG0402<>COG2986 - 2 - Cytosine deaminase and related metal-dependent hydrolases ** Histidine ammonia-lyase Q8YD09<131>Q8YD08 Brucella melitensis HUTH_XANCP<1279>Q8PAA5 Xanthomonas campestris COG0491<>COG0847 - 2 - Zn-dependent hydrolases, including glyoxylases ** DNA polymerase III, epsilon subunit and related 3-5 exonucleases GLO2_BUCAI<563>DP3E_BUCAI Buchnera aphidicola APS Q9A0S2<1040>Q9A0S1 Streptococcus pyogenes M1 COG0527<>COG1024 - 2 - Aspartokinases ** Enoyl-CoA hydratase/carnithine racemase AAK99178<325>AAK99179 Streptococcus pneumoniae R6 Q9PEB3<281>Q9PEB2 Xylella fastidiosa COG0583<>COG4925 - 2 - Transcriptional regulator ** Uncharacterized conserved protein BAC51795<101>BAC51796 Bradyrhizobium japonicum Q9PCM7<110>Q9PCM6 Xylella fastidiosa COG0640<>COG1720 - 2 - Predicted transcriptional regulators ** Uncharacterized conserved protein Q98K86<264>Q98K85 Mesorhizobium loti Q9V062<555>Q9V061 Pyrococcus abyssi COG1309<>COG3670 - 2 - Transcriptional regulator ** Lignostilbene-alpha,beta-dioxygenase and related enzymes BAC51054<107>BAC51055 Bradyrhizobium japonicum P96941<71>O06785 Mycobacterium tuberculosis H37Rv COG2207<>COG4221 - 2 - AraC-type DNA-binding domain-containing proteins ** Short-chain alcohol dehydrogenase of unknown specificity BAC50054<661>BAC50055 Bradyrhizobium japonicum Q8PPV5<71>Q8PPV4 Xanthomonas axonopodis COG2801<>COG3464 - 2 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives Q8U5W8<862>Q8UKK8 Agrobacterium tumefaciens Cereon P71641<676>P71639 Mycobacterium tuberculosis H37Rv COG0582<>COG2963 - 2 - Integrase ** Transposase and inactivated derivatives AAN79988<144>AAN79989 Escherichia coli O6 Q92S32<122>Q52956 Sinorhizobium meliloti Q92YJ6<132>Q925Y2 Sinorhizobium meliloti AAN41972<186>AAN41973 Shigella flexneri COG0583<>COG4771 - 2 - Transcriptional regulator ** Outer membrane receptor for ferrienterochelin and colicins Q8U913<55>Q8U914 Agrobacterium tumefaciens Cereon IRGB_VIBCH<145>IRGA_VIBCH Vibrio cholerae Q8U914<148>Q8U913 Agrobacterium tumefaciens Wash AAN57487<117>AAN57488 Shewanella oneidensis COG0477<>COG1249 - 2 - Permeases of the major facilitator superfamily ** Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Q97PL9<193>Q97PL8 Streptococcus pneumoniae TIGR4 AAL00245<190>AAL00246 Streptococcus pneumoniae R6 BAC46162<160>BAC46163 Bradyrhizobium japonicum COG0583<>COG1009 - 2 - Transcriptional regulator ** NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Q9KRQ6<80>Q9KRQ5 Vibrio cholerae Q8PKK0<80>Q8PKJ9 Xanthomonas axonopodis COG1024<>COG2847 - 2 - Enoyl-CoA hydratase/carnithine racemase ** Uncharacterized protein conserved in bacteria Q8PN29<66>Q8PN28 Xanthomonas axonopodis AAN56882<35>AAN56883 Shewanella oneidensis COG1228<>COG2188 - 2 - Imidazolonepropionase and related amidohydrolases ** Transcriptional regulators HUTI_XANCP<1403>Q8PAA4 Xanthomonas campestris AAN53182<207>AAN53183 Shewanella oneidensis COG2003<>COG3311 - 2 - DNA repair proteins ** Predicted transcriptional regulator Q8PKJ4<413>Q8PKJ3 Xanthomonas axonopodis Q9KR58<114>YH86_VIBCH Vibrio cholerae COG0583<>COG3531 - 2 - Transcriptional regulator ** Predicted protein-disulfide isomerase Q8ZHT5<1107>Q8ZHT3 Yersinia pestis KIM Q8ZI80<162>Q8ZI81 Yersinia pestis KIM Q98GA6<127>Q98GA5 Mesorhizobium loti Q8ZI81<162>Q8ZI80 Yersinia pestis CO92 COG0330<>COG1762 - 2 - Membrane protease subunits, stomatin/prohibitin homologs ** Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Q97NC0<192>Q97NB9 Streptococcus pneumoniae TIGR4 AAL00742<191>AAL00743 Streptococcus pneumoniae R6 AAN81964<317>AAN81965 Escherichia coli O6 COG0513<>COG0642 - 2 - Superfamily II DNA and RNA helicases ** Signal transduction histidine kinase AAO07109<352>AAO07110 Vibrio vulnificus Q8UCZ6<431>Q8UCZ5 Agrobacterium tumefaciens Wash Q8UCZ6<395>Q8UCZ5 Agrobacterium tumefaciens Cereon COG2199<>COG2963 - 2 - GGDEF domain ** Transposase and inactivated derivatives Q8UJV4<268>Q8UJV3 Agrobacterium tumefaciens Wash Q8UJV4<268>Q8UJV3 Agrobacterium tumefaciens Cereon AAN41979<151>AAN41980 Shigella flexneri COG0346<>COG0491 - 2 - Lactoylglutathione lyase and related lyases ** Zn-dependent hydrolases, including glyoxylases Q98KS3<160>Q98KS2 Mesorhizobium loti Q8Y5A2<131>Q8Y5A1 Listeria monocytogenes Q929K5<132>Q929K4 Listeria innocua COG0477<>COG1695 - 2 - Permeases of the major facilitator superfamily ** Predicted transcriptional regulators AAN59246<124>AAN59247 Streptococcus mutans Q9X768<167>Q9X769 Listeria monocytogenes Q92BU9<168>Q92BU8 Listeria innocua COG0176<>COG2390 - 2 - Transaldolase ** Transcriptional regulator, contains sigma factor-related N-terminal domain TAL_AGRT5<196>Q8U7I7 Agrobacterium tumefaciens Cereon Q9KLX0<593>TAL_VIBCH Vibrio cholerae AAO07499<464>AAO07500 Vibrio vulnificus COG0191<>COG1349 - 2 - Fructose/tagatose bisphosphate aldolase ** Transcriptional regulators of sugar metabolism AAN82458<342>AAN82460 Escherichia coli O6 Q986N8<193>Q986N7 Mesorhizobium loti Q8ZLV5<334>Q8XGZ9 Salmonella typhimurium LT2 COG0583<>COG1283 - 2 - Transcriptional regulator ** Na+/phosphate symporter Q92UW1<109>Q92UW0 Sinorhizobium meliloti AAO09031<409>AAO09032 Vibrio vulnificus O87918<395>NHAR_VIBCH Vibrio cholerae COG1309<>NOG07205 - 2 - Transcriptional regulator ** non supervised orthologous group Q8ZAG2<428>Q8ZAG3 Yersinia pestis KIM Q98GC7<107>Q98GC6 Mesorhizobium loti Q8ZAG3<428>Q8ZAG2 Yersinia pestis CO92 COG1396<>COG4197 - 2 - Predicted transcriptional regulators ** Uncharacterized protein conserved in bacteria, prophage-related Q8UI57<8>Q8UI56 Agrobacterium tumefaciens Cereon Q8XAD7<35>Q8XAD6 Escherichia coli EDL933 Q8XAD7<35>Q8XAD6 Escherichia coli O157 COG2801<>COG3436 - 2 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives BAC53556<175>BAC53557 Bradyrhizobium japonicum INSD_ECOLI<280>Q9JMS9 Escherichia coli K12 Q9ZGX4<27>Q9RI15 Yersinia pestis CO92 COG3293<>COG3335 - 2 - Transposase and inactivated derivatives ** Transposase and inactivated derivatives AAL00001<41>AAL00002 Streptococcus pneumoniae R6 BAC47089<224>BAC47090 Bradyrhizobium japonicum COG0477<>COG0561 - 2 - Permeases of the major facilitator superfamily ** Predicted hydrolases of the HAD superfamily P96742<1457>P96741 Bacillus subtilis Q8Z2N1<289>Q8Z2N0 Salmonella typhi CT18 Q8ZKY8<306>Q8ZKY7 Salmonella typhimurium LT2 COG0673<>COG2207 - 2 - Predicted dehydrogenases and related proteins ** AraC-type DNA-binding domain-containing proteins Q8ZB11<195>Q8ZB10 Yersinia pestis CO92 Q9KEY9<167>Q9KEY8 Bacillus halodurans Q8ZB10<195>Q8ZB11 Yersinia pestis KIM COG1263<>COG1820 - 2 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ** N-acetylglucosamine-6-phosphate deacetylase AAO08716<534>AAO08717 Vibrio vulnificus NAGA_VIBCH<469>Q9KTA8 Vibrio cholerae Q9KFQ7<307>Q9KFQ6 Bacillus halodurans COG1296<>COG1396 - 2 - Predicted branched-chain amino acid permease (azaleucine resistance) ** Predicted transcriptional regulators Q8XGA3<83>Q8ZKS3 Salmonella typhimurium LT2 Q8Z2V1<83>Q8XGA3 Salmonella typhi CT18 Q9K8U3<89>Q9K8U2 Bacillus halodurans COG0115<>COG1011 - 2 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ** Predicted hydrolase (HAD superfamily) BAC14583<148>BAC14584 Oceanobacillus iheyhensis Q985K5<155>Q985K4 Mesorhizobium loti COG0163<>COG0583 - 2 - 3-polyprenyl-4-hydroxybenzoate decarboxylase ** Transcriptional regulator P94403<90>PAAD_BACSU Bacillus subtilis BAC48794<105>BAC48795 Bradyrhizobium japonicum COG0296<>COG1523 - 2 - 1,4-alpha-glucan branching enzyme ** Type II secretory pathway, pullulanase PulA and related glycosidases BAC12361<341>BAC12362 Oceanobacillus iheyhensis Q92U64<143>Q92U63 Sinorhizobium meliloti COG0454<>COG1028 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) BAC13678<145>BAC13679 Oceanobacillus iheyhensis BAC50559<101>BAC50560 Bradyrhizobium japonicum COG0500<>COG2244 - 2 - SAM-dependent methyltransferases ** Membrane protein involved in the export of O-antigen and teichoic acid Q98NV5<303>Q98NV4 Mesorhizobium loti Q9KEN1<155>Q9KEN0 Bacillus halodurans COG0778<>COG1012 - 2 - Nitroreductase ** NAD-dependent aldehyde dehydrogenases Q92TE3<168>Q92TE2 Sinorhizobium meliloti Q9KAQ1<339>Q9KAQ0 Bacillus halodurans COG0841<>COG1309 - 2 - Cation/multidrug efflux pump ** Transcriptional regulator Q986H1<479>Q986H0 Mesorhizobium loti YERO_BACSU<93>O31501 Bacillus subtilis COG1028<>COG1902 - 2 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ** NADH:flavin oxidoreductases, Old Yellow Enzyme family BAC15270<174>BAC15271 Oceanobacillus iheyhensis BAC52871<1941>BAC52873 Bradyrhizobium japonicum COG1414<>COG3181 - 2 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria BAC15189<358>BAC15190 Oceanobacillus iheyhensis BAC46501<48>BAC46502 Bradyrhizobium japonicum COG1486<>COG2188 - 2 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases ** Transcriptional regulators Q92U51<214>Q92U50 Sinorhizobium meliloti BAC14228<188>BAC14229 Oceanobacillus iheyhensis COG2207<>COG4932 - 2 - AraC-type DNA-binding domain-containing proteins ** Predicted outer membrane protein Q8P2V8<385>Q8P2V7 Streptococcus pyogenes M18 Q8Y804<535>Q8Y803 Listeria monocytogenes COG0006<>COG1940 - 2 - Xaa-Pro aminopeptidase ** Transcriptional regulator/sugar kinase AAN54453<361>AAN54454 Shewanella oneidensis Q982N1<218>Q982N0 Mesorhizobium loti COG0473<>COG1280 - 2 - Isocitrate/isopropylmalate dehydrogenase ** Putative threonine efflux protein AAN80664<283>AAN80666 Escherichia coli O6 Q92KY9<173>LEU3_RHIME Sinorhizobium meliloti COG0524<>COG0697 - 2 - Sugar kinases, ribokinase family ** Permeases of the drug/metabolite transporter (DMT) superfamily Q98C17<344>Q98C15 Mesorhizobium loti AAO07822<181>AAO07823 Vibrio vulnificus COG0583<>COG1011 - 2 - Transcriptional regulator ** Predicted hydrolase (HAD superfamily) AAO08512<126>AAO08513 Vibrio vulnificus Q92Y02<55>Q92Y01 Sinorhizobium meliloti COG0628<>COG2963 - 2 - Predicted permease ** Transposase and inactivated derivatives Q52956<431>Q930G3 Sinorhizobium meliloti AAO07630<455>AAO07631 Vibrio vulnificus COG1171<>COG1522 - 2 - Threonine dehydratase ** Transcriptional regulators Q984M5<228>Q984M4 Mesorhizobium loti Q8ZQB2<317>DPAL_SALTY Salmonella typhimurium LT2 COG0454<>COG0840 - 2 - Histone acetyltransferase HPA2 and related acetyltransferases ** Methyl-accepting chemotaxis protein O05187<135>MCPC_BACSU Bacillus subtilis AAN55163<244>AAN55164 Shewanella oneidensis COG0583<>COG3328 - 2 - Transcriptional regulator ** Transposase and inactivated derivatives AAN54927<152>AAN54928 Shewanella oneidensis Q9JWQ4<366>Q9KB41 Bacillus halodurans COG1167<>COG2207 - 2 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs ** AraC-type DNA-binding domain-containing proteins AAO08518<99>AAO08519 Vibrio vulnificus P96662<218>P96663 Bacillus subtilis ## ## Below, we present additional pairs of orthologous groups which can be functionally linked by our method ## - the corresponding gene pairs are however redundant (and were thus omitted). Usually, this implies that ## observed 'DT-pairs' comprise fused genes belonging to more than one orthologous group ## (i.e., several pairs of orthologous groups may be linked by just one 'DT-pair'). ### ### COG1609<>COG4668 - 4 - Transcriptional regulators ** Mannitol/fructose-specific phosphotransferase system, IIA domain COG1018<>COG1959 - 4 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 ** Predicted transcriptional regulator COG2224<>COG3800 - 3 - Isocitrate lyase ** Predicted transcriptional regulator COG1080<>COG1609 - 3 - Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) ** Transcriptional regulators COG0073<>COG0489 - 3 - EMAP domain ** ATPases involved in chromosome partitioning COG0835<>COG1261 - 3 - Chemotaxis signal transduction protein ** Flagellar basal body P-ring biosynthesis protein COG1273<>COG1793 - 3 - Uncharacterized conserved protein ** ATP-dependent DNA ligase COG0042<>COG1211 - 2 - tRNA-dihydrouridine synthase ** 4-diphosphocytidyl-2-methyl-D-erithritol synthase COG0749<>NOG07351 - 2 - DNA polymerase I COG1429<>COG2203 - 2 - Cobalamin biosynthesis protein CobN and related Mg-chelatases ** GAF domain COG2005<>COG2998 - 2 - N-terminal domain of molybdenum-binding protein ** ABC-type tungstate transport system, permease component COG0304<>COG4121 - 2 - 3-oxoacyl-(acyl-carrier-protein) synthase ** Uncharacterized conserved protein COG0252<>COG4696 - 2 - L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D ** Uncharacterized protein conserved in bacteria COG0047<>COG4623 - 2 - Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain ** Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein COG1522<>COG4230 - 2 - Transcriptional regulators ** Delta 1-pyrroline-5-carboxylate dehydrogenase COG0517<>NOG07381 - 2 - CBS domain ** non supervised orthologous group COG0583<>COG0695 - 2 - Transcriptional regulator ** Glutaredoxin and related proteins COG0062<>COG1600 - 2 - Uncharacterized conserved protein ** Uncharacterized Fe-S protein COG0398<>COG2185 - 2 - Uncharacterized conserved protein ** Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) COG1268<>COG1654 - 2 - Uncharacterized conserved protein ** Biotin operon repressor COG0625<>COG2203 - 2 - Glutathione S-transferase ** GAF domain COG1309<>COG3580 - 2 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria COG1309<>COG3581 - 2 - Transcriptional regulator ** Uncharacterized protein conserved in bacteria COG1522<>COG4231 - 2 - Transcriptional regulators ** Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits COG1018<>COG3604 - 2 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 ** Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains COG1264<>COG2188 - 2 - Phosphotransferase system IIB components ** Transcriptional regulators COG0363<>COG1264 - 2 - 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase ** Phosphotransferase system IIB components COG0607<>COG1722 - 2 - Rhodanese-related sulfurtransferase ** Exonuclease VII small subunit COG0784<>COG1129 - 2 - CheY-like receiver ** ABC-type sugar transport system, ATPase component COG0794<>COG5007 - 2 - Predicted sugar phosphate isomerase involved in capsule formation ** Predicted transcriptional regulator, BolA superfamily COG0658<>COG3216 - 2 - Predicted membrane metal-binding protein ** Uncharacterized protein conserved in bacteria COG1264<>COG1737 - 2 - Phosphotransferase system IIB components ** Transcriptional regulators COG1264<>COG1820 - 2 - Phosphotransferase system IIB components ** N-acetylglucosamine-6-phosphate deacetylase