## ## Table of transcription regulatory orthologous groups ## ## ## This file lists orthologous groups (Tatusov et al., Science ## 1997;278:631-7; von Mering et al., Nucleic Acids Res. ## 2003;31:258-61) annotated as transcriptional regulators. ## ## Namely, we considered: ## ## a) COGs (Tatusov et al., Science 1997;278:631-7), which have ## been annotated as "transcriptional regulators" (or as "putative ## transcriptional regulators"). ## ## b) Moreover, COGs of which at least 30% of the members were ## assigned to relevant Gene Ontology (GO) terms ## (Camon et al., Genome Res. 2003; 13:662-72) related to ## transcriptional regulation (i.e. GO:0006355, GO:003052, and ## child terms of these), were considered. ## ## c) The following orthologous groups were then automatically (some ## manually) removed: RNA-polymerase subunits, transposases, restriction ## enzymes, other DNA-modification enzymes, proteins involved in ## DNA-stability, repair or replication. ## ## ## COG0195 COG0250 COG0260 COG0347 COG0425 COG0517 COG0583 COG0589 COG0593 COG0640 COG0664 COG0735 COG0745 COG0781 COG0782 COG0789 COG0864 COG1158 COG1167 COG1221 COG1278 COG1309 COG1316 COG1318 COG1321 COG1327 COG1329 COG1339 COG1349 COG1378 COG1379 COG1386 COG1395 COG1396 COG1405 COG1414 COG1420 COG1426 COG1438 COG1475 COG1476 COG1497 COG1510 COG1521 COG1522 COG1551 COG1598 COG1609 COG1654 COG1675 COG1678 COG1695 COG1709 COG1725 COG1733 COG1737 COG1747 COG1765 COG1777 COG1802 COG1813 COG1842 COG1846 COG1940 COG1959 COG1974 COG1983 COG2002 COG2005 COG2101 COG2186 COG2188 COG2197 COG2200 COG2204 COG2207 COG2336 COG2337 COG2345 COG2378 COG2390 COG2508 COG2522 COG2524 COG2716 COG2740 COG2747 COG2771 COG2808 COG2901 COG2909 COG2916 COG2932 COG2944 COG2964 COG2973 COG3026 COG3057 COG3060 COG3070 COG3073 COG3086 COG3093 COG3109 COG3160 COG3172 COG3226 COG3279 COG3283 COG3284 COG3311 COG3327 COG3355 COG3357 COG3423 COG3432 COG3561 COG3604 COG3617 COG3620 COG3629 COG3636 COG3645 COG3655 COG3682 COG3711 COG3800 COG4465 COG4582 COG4626 COG4977 COG5007 NOG07455 NOG08239 NOG08262 NOG09875 NOG10847 NOG12354 NOG12737 NOG13753