Cluster '4' (COG majority vote 'metab', protein majority vote 'go_metab_others', 73 proteins in cluster) AERESPDON-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY AERESPDON-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY AERESPDON-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY PROPIONMET-PWY PWY0-43 ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY PURSYN-PWY AERESPDON-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY AERESPDON-PWY ANARESPDON-PWY ENZYME: FDHF_ECOLI P07658[U] (NOG04340[S]) Formate dehydrogenase H (EC 1.2.1.2) (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) (Formate dehydrogenase-H alpha subunit) (FDH-H). ENZYME: HYCE_ECOLI P16431[BL] (COG3261[C] COG3262[C]) Formate hydrogenlyase subunit 5 precursor (FHL subunit 5) (Hydrogenase-3 component E). ENZYME: HYCG_ECOLI P16433[BL] (COG3260[C]) Formate hydrogenlyase subunit 7 (FHL subunit 7) (Hydrogenase-3 component G). ENZYME: NUOE_ECOLI P33601[BL] (COG1905[C]) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH dehydrogenase I, chain E) (NDH-1, chain E) (NUO5). ENZYME: NUOF_ECOLI P31979[BL] (COG1894[C]) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH dehydrogenase I, chain F) (NDH-1, chain F) (NUO6). ENZYME: SBM_ECOLI P27253[L] (COG1884[I] COG2185[I]) Sbm protein. ENZYME: HYCF_ECOLI P16432[B] (COG1143[C]) Formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3 component F). ENZYME: NUOI_ECOLI P33604[B] (COG1143[C]) NADH-quinone oxidoreductase chain I (EC 1.6.99.5) (NADH dehydrogenase I, chain I) (NDH-1, chain I) (NUO9). ENZYME: HYCB_ECOLI P16428[B] (COG1142[C]) Formate hydrogenlyase subunit 2 (FHL subunit 2) (Hydrogenase-3 component B). ENZYME: NUOG_ECOLI P33602[B] (COG1034[C]) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH dehydrogenase I, chain G) (NDH-1, chain G) (NUO7). ENZYME: NUOL_ECOLI P33607[BL] (COG1009[P] [C]) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH dehydrogenase I, chain L) (NDH-1, chain L) (NUO12). ENZYME: NUOM_ECOLI P31978[BL] (COG1008[C]) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH dehydrogenase I, chain M) (NDH-1, chain M) (NUO13). ENZYME: NUON_ECOLI P33608[BL] (COG1007[C]) NADH-quinone oxidoreductase chain N (EC 1.6.99.5) (NADH dehydrogenase I, chain N) (NDH-1, chain N) (NUO14). ENZYME: NUOH_ECOLI P33603[B] (COG1005[C]) NADH-quinone oxidoreductase chain H (EC 1.6.99.5) (NADH dehydrogenase I, chain H) (NDH-1, chain H) (NUO8). ENZYME: NUOJ_ECOLI P33605[BL] (COG0839[C]) NADH-quinone oxidoreductase chain J (EC 1.6.99.5) (NADH dehydrogenase I, chain J) (NDH-1, chain J) (NUO10). ENZYME: NUOA_ECOLI P33597[BL] (COG0838[C]) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH dehydrogenase I, chain A) (NDH-1, chain A) (NUO1). ENZYME: NUOK_ECOLI P33606[BL] (COG0713[C]) NADH-quinone oxidoreductase chain K (EC 1.6.99.5) (NADH dehydrogenase I, chain K) (NDH-1, chain K) (NUO11). ENZYME: NUCD_ECOLI P33599[BL] (COG0649[C] COG0852[C]) NADH-quinone oxidoreductase chain C/D (EC 1.6.99.5) (NADH dehydrogenase I, chain C/D) (NDH-1, chain C/D) (NUO3/NUO4). ENZYME: NUOB_ECOLI P33598[BL] (COG0377[C]) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH dehydrogenase I, chain B) (NDH-1, chain B) (NUO2). ENZYME: PURK_ECOLI P09029[U] (COG0026[F]) Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC). P16434[U]+(NOG06656[S]) Formate hydrogenlyase maturation protein hycH. P71229[D]+(COG3604[K] [T]) Hydrogenase-4 transcriptional activator. P37013[D]+(COG3604[K] [T]) Hypothetical sigma-54-dependent transcriptional regulator ygaA. P19323[D]+(COG3604[K] [T]) Formate hydrogenlyase transcriptional activator. P37065[U]+(COG3304[S]) Hypothetical protein yccF. P77329[BL]*(COG3261[C] COG3262[C]) Hydrogenase-4 component G (EC 1.-.-.-). P77668[BL]*(COG3260[C]) Hydrogenase-4 component I (EC 1.-.-.-). P37668[U]+(COG2944[K]) Hypothetical protein yiaG. P45472[C]+(COG2827[L]) Hypothetical protein yhbQ. P20605[J]+(COG2184[D]) Cell filamentation protein fic. P37327[U]+(COG2116[P]) Hypothetical protein yfdC. P11097[IL]+(COG2116[P]) Potential nitrite transporter. P21501[I]+(COG2116[P]) Probable formate transporter 1 (Formate channel 1). P77733[I]+(COG2116[P]) Probable formate transporter 2 (Formate channel 2). P19928[BL]+(COG1740[C]) Hydrogenase-1 small chain precursor (EC 1.18.99.1) (NiFe hydrogenase) (Membrane-bound hydrogenase 1 small subunit) (HYD1). Q46847[BL]+(COG1740[C]) Hydrogenase-2 small chain precursor (EC 1.18.99.1) (NiFe hydrogenase) (Membrane-bound hydrogenase 2 small subunit) (HYD2). P33582[EI]+(COG1314[N]) Protein-export membrane protein secG (Preprotein translocase band 1 subunit) (P12). P23480[U]+(COG1225[O]) Bacterioferritin comigratory protein. P77423[B]*(COG1143[C]) Hydrogenase-4 component H. Q46819[B]*(COG1142[C]) Putative electron transport protein ygfS. P56256[B]*(COG1142[C]) Putative electron transport protein ysaA. P23481[B]*(COG1142[C]) Hydrogenase-4 component A (EC 1.-.-.-). P30132[B]*(COG1142[C]) Electron transport protein hydN. P77186[B]*(COG1142[C]) Putative ferredoxin-like protein ydhY. P77416[BL]*(COG1009[P] [C]) Hydrogenase-4 component D (EC 1.-.-.-). P75960[CDKO]+(COG0846[H]) CobB protein. P45468[U]+(COG0701[R]) Hypothetical protein yraQ. P04816[I]+(COG0683[E]) Leucine-specific binding protein precursor (LS-BP) (L-BP). P02917[I]+(COG0683[E]) Leu/Ile/Val-binding protein precursor (LIV-BP). Q57451[E]+(COG0680[C]) Hydrogenase 3 maturation protease (EC 3.4.-.-). P19930[E]+(COG0680[C]) Hydrogenase 1 maturation protease (EC 3.4.24.-). P37182[E]+(COG0680[C]) Hydrogenase 2 maturation protease (EC 3.4.24.-). P23482[BL]+(COG0651[P] [C]) Hydrogenase-4 component B (EC 1.-.-.-). P16429[BL]+(COG0651[P] [C]) Formate hydrogenlyase subunit 3 (FHL subunit 3) (Hydrogenase-3 component C). P77437[BL]+(COG0651[P] [C]) Hydrogenase-4 component F (EC 1.-.-.-). P77858[B]+(COG0650[C]) Hydrogenase-4 component C (EC 1.-.-.-). P16430[B]+(COG0650[C]) Formate hydrogenlyase subunit 4 (FHL subunit 4) (Hydrogenase 3 component D). P37127[BGM]*(COG0493[R] [E] COG1142[C]) AegA protein. Q46820[BGLM]*(COG0493[R] [E] COG1142[C]) Hypothetical protein ygfT. P24198[I]+(COG0428[P]) Zinc transporter zupT. Q46877[BI]+(COG0426[C] COG1773[C]) Flavorubredoxin (FlRd). P22730[I]+(COG0411[E]) High-affinity branched-chain amino acid transport ATP-binding protein livG (LIV-I protein G). P22731[I]+(COG0410[E]) High-affinity branched-chain amino acid transport ATP-binding protein livF (LIV-I protein F). P24192[U]+(COG0409[O]) Hydrogenase isoenzymes formation protein hypD. P24190[E]+(COG0378[O] [K]) Hydrogenase isoenzymes nickel incorporation protein hypB. P37184[E]+(COG0375[R]) Probable hydrogenase nickel incorporation protein hybF (Hydrogenase-2 operon protein hybF). P24189[E]+(COG0375[R]) HypA protein. P37181[B]+(COG0374[C]) Hydrogenase-2 large chain precursor (EC 1.18.99.1) (NiFe hydrogenase) (Membrane-bound hydrogenase 2 large subunit) (HYD2). P19927[B]+(COG0374[C]) Hydrogenase-1 large chain (EC 1.18.99.1) (NiFe hydrogenase) (Membrane- bound hydrogenase 1 large subunit) (HYD1). P24193[U]+(COG0309[O]) Hydrogenase isoenzymes formation protein hypE. P37185[U]+(COG0298[O]) Hydrogenase-2 operon protein hybG. P24191[U]+(COG0298[O]) Hydrogenase isoenzymes formation protein hypC. P30131[U]+(COG0068[O]) Hydrogenase maturation protein hypF. [cluster '4' has 29 of 73 proteins with EC-number annotated.] Cluster '115' (COG majority vote 'metab', protein majority vote 'mix', 5 proteins in cluster) DEOXYRIBONUCMET-PWY DEOXYRIBONUCMET-PWY DEOXYRIBONUCMET-PWY DEOXYRIBONUCMET-PWY ENZYME: RIR3_ECOLI P39452[CJ] (COG0209[F]) Ribonucleoside-diphosphate reductase 2 alpha chain (EC 1.17.4.1) (Ribonucleotide reductase 2) (R1E protein). ENZYME: RIR1_ECOLI P00452[CJ] (COG0209[F]) Ribonucleoside-diphosphate reductase 1 alpha chain (EC 1.17.4.1) (Ribonucleotide reductase 1) (B1 protein) (R1 protein). ENZYME: RIR2_ECOLI P00453[CJ] (COG0208[F]) Ribonucleoside-diphosphate reductase 1 beta chain (EC 1.17.4.1) (Ribonucleotide reductase 1) (B2 protein) (R2 protein). ENZYME: RIR4_ECOLI P37146[CJ] (COG0208[F]) Ribonucleoside-diphosphate reductase 2 beta chain (EC 1.17.4.1) (Ribonucleotide reductase 2) (R2F protein). Q47415[U]+(COG1780[F]) NrdI protein. [cluster '115' has 4 of 5 proteins with EC-number annotated.] Cluster '5' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 77 proteins in cluster) SO4ASSIM-PWY ALKANEMONOX-PWY ANARESPACC-PWY SO4ASSIM-PWY ALKANEMONOX-PWY PROUT-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY DEOXYPYRNUCMET-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY ANARESP1-PWY ANARESPDON-PWY FERMENTATION-PWY CYANCAT-PWY ANARESPACC-PWY ENZYME: FDNH_ECOLI P24184[B] (NOG21010[S]) Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit (Formate dehydrogenase-N beta subunit) (FDH-N beta subunit) (Anaerobic formate dehydrogenase iron-sulfur subunit). ENZYME: FDOH_ECOLI P32175[B] (NOG21010[S]) Formate dehydrogenase-O, iron-sulfur subunit (Formate dehydrogenase-O beta subunit) (FDH-Z beta subunit) (Aerobic formate dehydrogenase iron-sulfur subunit). ENZYME: DMSC_ECOLI P18777[U] (COG3302[R]) Anaerobic dimethyl sulfoxide reductase chain C (DMSO reductase anchor subunit). ENZYME: TORY_ECOLI P52005[B] (COG3005[C]) Cytochrome c-type protein torY. ENZYME: TORC_ECOLI P33226[B] (COG3005[C]) Cytochrome c-type protein torC. ENZYME: FDNI_ECOLI P24185[B] (COG2864[C]) Formate dehydrogenase, nitrate-inducible, cytochrome b556(FDN) subunit (Formate dehydrogenase-N gamma subunit) (FDH-N gamma subunit) (Anaerobic formate dehydrogenase cytochrome b556 subunit). ENZYME: FDOI_ECOLI P32174[B] (COG2864[C]) Formate dehydrogenase, cytochrome b556(FDO) subunit (Formate dehydrogenase-O gamma subunit) (FDH-Z gamma subunit) (Aerobic formate dehydrogenase cytochrome b556 subunit). ENZYME: NARV_ECOLI P19316[BL] (COG2181[C]) Respiratory nitrate reductase 2 gamma chain (EC 1.7.99.4). ENZYME: NARI_ECOLI P11350[BL] (COG2181[C]) Respiratory nitrate reductase 1 gamma chain (EC 1.7.99.4) (Cytochrome B-NR). ENZYME: CYNS_ECOLI P00816[L] (COG1513[P]) Cyanate hydratase (EC 4.2.1.104) (Cyanase) (Cyanate lyase) (Cyanate hydrolase). ENZYME: NIRB_ECOLI P08201[BL] (COG1251[C]) Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4). ENZYME: NARH_ECOLI P11349[BL] (COG1140[P]) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4). ENZYME: NARY_ECOLI P19318[BL] (COG1140[P]) Respiratory nitrate reductase 2 beta chain (EC 1.7.99.4). ENZYME: DCD_ECOLI P28248[U] (COG0717[F]) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP deaminase). ENZYME: PUTA_ECOLI P09546[DGLMN] (COG0506[E] COG1012[C]) Bifunctional putA protein [Includes: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C dehydrogenase)]. ENZYME: DMSB_ECOLI P18776[B] (COG0437[C]) Anaerobic dimethyl sulfoxide reductase chain B (DMSO reductase iron- sulfur subunit). ENZYME: NRFC_ECOLI P32708[B] (COG0437[C]) NrfC protein. ENZYME: CYSJ_ECOLI P38038[BGM] (COG0369[P]) Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) (SIR-FP). ENZYME: NAPH_ECOLI P33934[B] (COG0348[C]) Ferredoxin-type protein napH. ENZYME: FDOG_ECOLI P32176[U] (COG0243[C]) Formate dehydrogenase-O, major subunit (EC 1.2.1.2) (Formate dehydrogenase-O alpha subunit) (FDH-Z alpha subunit) (Aerobic formate dehydrogenase major subunit). ENZYME: TORA_ECOLI P33225[B] (COG0243[C]) Trimethylamine-N-oxide reductase 1 precursor (EC 1.7.2.3) (TMAO reductase 1) (Trimethylamine oxidase 1). ENZYME: NAPA_ECOLI P33937[BL] (COG0243[C]) Periplasmic nitrate reductase precursor (EC 1.7.99.4). ENZYME: TORZ_ECOLI P46923[B] (COG0243[C]) Trimethylamine-N-oxide reductase 2 precursor (EC 1.7.2.3) (TMAO reductase 2) (Trimethylamine oxidase 2). ENZYME: NARG_ECOLI P09152[BL] (COG0243[C]) Respiratory nitrate reductase 1 alpha chain (EC 1.7.99.4). ENZYME: NARZ_ECOLI P19319[BL] (COG0243[C]) Respiratory nitrate reductase 2 alpha chain (EC 1.7.99.4). ENZYME: FDNG_ECOLI P24183[U] (COG0243[C]) Formate dehydrogenase, nitrate-inducible, major subunit (EC 1.2.1.2) (Formate dehydrogenase-N alpha subunit) (FDH-N alpha subunit) (Anaerobic formate dehydrogenase major subunit). ENZYME: DMSA_ECOLI P18775[U] (COG0243[C]) Anaerobic dimethyl sulfoxide reductase chain A precursor (EC 1.8.99.-) (DMSO reductase). ENZYME: CYSI_ECOLI P17846[BGM] (COG0155[P]) Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) (SIR-HP) (SIRHP). P76174[U]+(COG3381[R]) Hypothetical protein ynfI precursor. P36662[U]+(COG3381[R]) Chaperone protein torD. P75915[U]+(COG3381[R]) Hypothetical protein ycdY. P76173[U]*(COG3302[R]) Anaerobic dimethyl sulfoxide reductase chain ynfH (DMSO reductase anchor subunit ynfH). P32711[U]+(COG3088[O]) Formate-dependent nitrite reductase complex nrfF subunit precursor. P13024[U]+(COG3058[O]) Protein fdhE. P30745[O]+(COG2896[H]) Molybdenum cofactor biosynthesis protein A. P33930[EI]+(COG2386[O]) Heme exporter protein B (Cytochrome c-type biogenesis protein ccmB). P33928[E]+(COG2332[O]) Cytochrome c-type biogenesis protein ccmE. P31577[B]+(COG2249[R]) Putative NAD(P)H oxidoreductase yabF (EC 1.6.99.-). P40717[B]+(COG2249[R]) Modulator of drug activity B. P43340[B]+(COG2249[R]) Putative NAD(P)H oxidoreductase ycaK (EC 1.6.99.-). P45534[B]+(COG2249[R]) Putative NAD(P)H oxidoreductase yheR (EC 1.6.99.-). P10903[IL]+(COG2223[P]) Nitrite extrusion protein 1 (Nitrite facilitator 1). P37758[IL]+(COG2223[P]) Nitrite extrusion protein 2 (Nitrite facilitator 2). P19317[BL]+(COG2180[C]) Respiratory nitrate reductase 2 delta chain (EC 1.7.99.4). P11351[BL]+(COG2180[C]) Respiratory nitrate reductase 1 delta chain (EC 1.7.99.4). P37631[B]+(COG2081[R]) Hypothetical protein yhiN. P37901[L]+(COG2077[O]) Thiol peroxidase (EC 1.11.1.-) (Scavengase P20). P53635[L]+(COG2032[P]) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) (Bacteriocuprein). P46930[DI]+(COG2005[R]) Transcriptional regulator modE. P30748[LO]+(COG1977[H]) Molybdopterin converting factor subunit 1 (MPT synthase subunit 1) (Molybdopterin synthase subunit 1) (Molybdenum cofactor biosynthesis protein D) (Molybdopterin converting factor small subunit). P37197[BL]+(COG1858[P]) Probable cytochrome C peroxidase (EC 1.11.1.5). P32125[O]+(COG1763[H]) Molybdopterin-guanine dinucleotide biosynthesis protein B. P32177[B]+(COG1526[C]) FdhD protein. Q46896[U]+(COG1518[S]) Hypothetical protein ygbT. P37025[U]+(COG1514[J]) 2'-5' RNA ligase (EC 6.5.1.-). P30018[BI]+(COG1495[O]) Disulfide bond formation protein B (Disulfide oxidoreductase). P26606[U]+(COG1285[S]) Hypothetical protein yhiD. P25396[U]+(COG1275[P]) Tellurite resistance protein tehA. P38036[I]+(COG1203[R]) Hypothetical protein ygcB. P32710[EI]+(COG1138[O]) Cytochrome c-type biogenesis protein nrfE. P33927[EI]+(COG1138[O]) Cytochrome c-type biogenesis protein ccmF. P24232[BI]+(COG1017[C] COG1018[C]) Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Dihydropteridine reductase) (EC 1.6.99.7) (Ferrisiderophore reductase B) (Nitric oxide dioxygenase) (EC 1.14.12.17) (NOD). P32173[O]+(COG0746[H]) Molybdopterin-guanine dinucleotide biosynthesis protein A (Protein FA). P16456[U]+(COG0709[E]) Selenide,water dikinase (EC 2.7.9.3) (Selenophosphate synthetase) (Selenium donor protein). P23884[GN]+(COG0509[E]) Glycine cleavage system H protein. P33925[E]+(COG0457[R] COG3088[O]) Cytochrome c-type biogenesis protein ccmH precursor. P77375[B]*(COG0437[C]) Putative ferredoxin-like protein ydhX. P37179[B]*(COG0437[C]) Hydrogenase-2 operon protein hybA precursor. P77313[B]*(COG0437[C]) Probable anaerobic dimethyl sulfoxide reductase chain ynfG (DMSO reductase iron-sulfur subunit ynfG). P52636[B]*(COG0348[C]) Putative electron transport protein yccM. P30747[O]+(COG0315[H]) Molybdenum cofactor biosynthesis protein C. P30749[O]+(COG0314[H]) Molybdopterin converting factor subunit 2 (MPT synthase subunit 2) (Molybdopterin synthase subunit 2) (Molybdenum cofactor biosynthesis protein E) (Molybdopterin converting factor large subunit). P12281[O]+(COG0303[H]) Molybdopterin biosynthesis protein moeA. P77374[U]*(COG0243[C]) Putative dimethyl sulfoxide reductase chain ynfE precursor (EC 1.8.99.-) (DMSO reductase). P77783[U]*(COG0243[C]) Probable dimethyl sulfoxide reductase chain ynfF precursor (EC 1.8.99.-) (DMSO reductase). P77561[U]*(COG0243[C]) Hypothetical protein ydeP. P20099[B]*(COG0243[C]) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS reductase) (BSO reductase). [cluster '5' has 32 of 77 proteins with EC-number annotated.] Cluster '27' (COG majority vote 'metab', protein majority vote 'mix', 20 proteins in cluster) GLYCOCAT-PWY GLYCOCAT-PWY TREDEGLOW-PWY GLYCOGENSYNTH-PWY GLYCOCAT-PWY GLUCOSE1PMETAB-PWY GLYCOCAT-PWY GLYCOCAT-PWY GLYCOCAT-PWY GLYCOCAT-PWY GLYCOGENSYNTH-PWY GLYCOGENSYNTH-PWY ENZYME: MALQ_ECOLI P15977[A] (COG1640[G]) 4-alpha-glucanotransferase (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme). ENZYME: GLGC_ECOLI P00584[AO] (COG0448[G]) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase). ENZYME: MALZ_ECOLI P21517[A] (COG0366[G]) Maltodextrin glucosidase (EC 3.2.1.20) (Alpha-glucosidase). ENZYME: AMY2_ECOLI P26612[A] (COG0366[G]) Cytoplasmic alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase). ENZYME: AMY1_ECOLI P25718[A] (COG0366[G]) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase). ENZYME: TREC_ECOLI P28904[A] (COG0366[G]) Trehalose-6-phosphate hydrolase (EC 3.2.1.93) (Alpha,alpha- phosphotrehalase). ENZYME: GLGA_ECOLI P08323[AO] (COG0297[G]) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial glycogen] synthase). ENZYME: GLGB_ECOLI P07762[AO] (COG0296[G]) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen branching enzyme). ENZYME: PHSM_ECOLI P00490[AG] (COG0058[G]) Maltodextrin phosphorylase (EC 2.4.1.1). ENZYME: PHSG_ECOLI P13031[AG] (COG0058[G]) Glycogen phosphorylase (EC 2.4.1.1). ENZYME: PGMU_ECOLI P36938[A] (COG0033[G]) Phosphoglucomutase (EC 5.4.2.2) (Glucose phosphomutase) (PGM). P75742[I]+(COG3104[E]) Hypothetical transporter ybgH. P77304[I]+(COG3104[E]) Hypothetical transporter ydgR. P39276[I]+(COG3104[E]) Hypothetical transporter yjdL. P36837[I]+(COG3104[E]) Hypothetical transporter yhiP. P02928[I]+(COG2182[G]) Maltose-binding periplasmic protein precursor (Maltodextrin-binding protein) (MMBP). P15067[AO]+(COG1523[G]) Glycogen operon protein glgX (EC 3.2.1.-). P76619[U]*(COG0366[G]) From BASES 2775730 to 2786129 (Section 240 of 400) of the complete genome (Section 240 of 400) (Hypothetical 24.2 kDa protein). P76041[A]*(COG0366[G]) Putative sucrose phosphorylase (EC 2.4.1.7) (Sucrose glucosyltransferase). P76618[U]*(COG0366[G]) From BASES 2775730 to 2786129 (Section 240 of 400) of the complete genome (Section 240 of 400). [cluster '27' has 13 of 20 proteins with EC-number annotated.] Cluster '173' (COG majority vote 'metab', protein majority vote 'go_amino', 8 proteins in cluster) VALSYN-PWY ILEUSYN-PWY VALSYN-PWY ILEUSYN-PWY GLYCOLATEMET-PWY PWY0-41 VALSYN-PWY ILEUSYN-PWY VALSYN-PWY ILEUSYN-PWY VALSYN-PWY ILEUSYN-PWY VALSYN-PWY ILEUSYN-PWY ENZYME: ILVH_ECOLI P00894[GLM] (COG0440[E]) Acetolactate synthase isozyme III small subunit (EC 4.1.3.18) (AHAS- III) (Acetohydroxy-acid synthase III small subunit) (ALS-III). ENZYME: ILVM_ECOLI P13048[GM] (COG0440[E]) Acetolactate synthase isozyme II small subunit (EC 4.1.3.18) (AHAS-II) (Acetohydroxy-acid synthase II small subunit) (ALS-II). ENZYME: ILVN_ECOLI P08143[GLM] (COG0440[E]) Acetolactate synthase isozyme I small subunit (EC 4.1.3.18) (AHAS-I) (Acetohydroxy-acid synthase I small subunit) (ALS-I). ENZYME: GCL_ECOLI P30146[U] (COG0028[H] [E]) Glyoxylate carboligase (EC 4.1.1.47) (Tartronate-semialdehyde synthase). ENZYME: ILVB_ECOLI P08142[GM] (COG0028[H] [E]) Acetolactate synthase isozyme I large subunit (EC 4.1.3.18) (AHAS-I) (Acetohydroxy-acid synthase I large subunit) (ALS-I). ENZYME: ILVG_ECOLI P00892[GM] (COG0028[H] [E]) Acetolactate synthase isozyme II large subunit (EC 4.1.3.18) (AHAS-II) (Acetohydroxy-acid synthase II large subunit) (ALS-II). ENZYME: ILVI_ECOLI P00893[GM] (COG0028[H] [E]) Acetolactate synthase isozyme III large subunit (EC 4.1.3.18) (AHAS- III) (Acetohydroxy-acid synthase III large subunit) (ALS-III). P78093[U]*(COG0028[H] [E]) Probable oxalyl-CoA decarboxylase (EC 4.1.1.8). [cluster '173' has 8 of 8 proteins with EC-number annotated.] Cluster '43' (COG majority vote 'metab', protein majority vote 'mix', 7 proteins in cluster) FASYN-INITIAL-PWY FASYN-INITIAL-PWY FASYN-INITIAL-PWY PROPIONMET-PWY PWY0-43 FASYN-INITIAL-PWY ENZYME: SBM_ECOLI P27253[L] (COG1884[I] COG2185[I]) Sbm protein. ENZYME: ACCA_ECOLI P30867[HO] (COG0825[I]) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC 6.4.1.2). ENZYME: ACCD_ECOLI P08193[HO] (COG0777[I]) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain). ENZYME: BCCP_ECOLI P02905[HO] (COG0511[I]) Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP). ENZYME: ACCC_ECOLI P24182[HLO] (COG0439[I]) Biotin carboxylase (EC 6.3.4.14) (A subunit of acetyl-CoA carboxylase) (EC 6.4.1.2) (ACC). P37147[U]+(COG3030[R]) FxsA protein (Suppressor of F exclusion of phage T7). P19933[I]+(COG0786[E]) Sodium/glutamate symport carrier protein (Glutamate permease). [cluster '43' has 3 of 7 proteins with EC-number annotated.] Cluster '23' (COG majority vote 'metab', protein majority vote 'go_amino', 12 proteins in cluster) TRPSYN-PWY FOLSYN-PWY FOLSYN-PWY TRPSYN-PWY TRPSYN-PWY ALANINE-VALINESYN-PWY LEUSYN-PWY VALSYN-PWY ILEUSYN-PWY TRPSYN-PWY TRPSYN-PWY ENZYME: TRPG_ECOLI P00904[GLM] (COG0512[H] [E] COG0547[E]) Anthranilate synthase component II (EC 4.1.3.27) [Includes: Glutamine amidotransferase; Anthranilate phosphoribosyltransferase (EC 2.4.2.18)]. ENZYME: PABA_ECOLI P00903[G] (COG0512[H] [E]) Para-aminobenzoate synthase glutamine amidotransferase component II (EC 4.1.3.-). ENZYME: TRPA_ECOLI P00928[GM] (COG0159[E]) Tryptophan synthase alpha chain (EC 4.2.1.20). ENZYME: TRPE_ECOLI P00895[GMO] (COG0147[H] [E]) Anthranilate synthase component I (EC 4.1.3.27). ENZYME: PABB_ECOLI P05041[O] (COG0147[H] [E]) Para-aminobenzoate synthase component I (EC 4.1.3.-) (ADC synthase). ENZYME: TRPC_ECOLI P00909[GM] (COG0134[E] COG0135[E]) Tryptophan biosynthesis protein trpCF [Includes: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phospho- ribosyl)anthranilate isomerase (EC 5.3.1.24) (PRAI)]. ENZYME: TRPB_ECOLI P00932[GM] (COG0133[E]) Tryptophan synthase beta chain (EC 4.2.1.20). ENZYME: ILVE_ECOLI P00510[GLM] (COG0115[H] [E]) Branched-chain amino acid aminotransferase (EC 2.6.1.42) (Transaminase B) (BCAT). P45423[U]+(NOG05181[S]) Hypothetical protein yhcG. P76481[U]+(COG2304[R]) Hypothetical protein yfbK. P52103[U]+(COG1462[M]) Curli production assembly/transport component csgG precursor. P30177[L]*(COG0547[E]) Hypothetical protein ybiB. [cluster '23' has 8 of 12 proteins with EC-number annotated.] Cluster '11' (COG majority vote 'cell', protein majority vote 'go_carbo_lipid', 23 proteins in cluster) ECASYN-PWY ECASYN-PWY ECASYN-PWY DTDPRHAMSYN-PWY ECASYN-PWY DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY OANTIGEN-PWY ECASYN-PWY DTDPRHAMSYN-PWY COLANSYN-PWY ECASYN-PWY DTDPRHAMSYN-PWY ECASYN-PWY DTDPRHAMSYN-PWY ENZYME: WECG_ECOLI P27836[O] (COG1922[M]) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-) (UDP-ManNAcA transferase). ENZYME: RFBC_ECOLI P37745[AHKO] (COG1898[M]) dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) (dTDP-4-keto-6- deoxyglucose 3,5-epimerase) (dTDP-L-rhamnose synthetase). ENZYME: RFFH_ECOLI P27831[AHO] (COG1209[M]) Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase). ENZYME: RBA1_ECOLI P37744[AHO] (COG1209[M]) Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase). ENZYME: RBD1_ECOLI P37760[AHO] (COG1091[M]) dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) (dTDP-4-keto-L- rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L- rhamnose synthetase). ENZYME: RBB1_ECOLI P37759[AHO] (COG1088[M]) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46). ENZYME: RFFG_ECOLI P27830[AHO] (COG1088[M]) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46). ENZYME: UDG_ECOLI P76373[B] (COG1004[M]) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH). ENZYME: WECC_ECOLI P27829[B] (COG0677[M]) UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.-) (UDP-ManNAc dehydrogenase). ENZYME: GLF_ECOLI P37747[AHO] (COG0562[M]) UDP-galactopyranose mutase (EC 5.4.99.9). ENZYME: WECB_ECOLI P27828[AHKO] (COG0381[M]) UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) (UDP-GlcNAc-2- epimerase) (Bacteriophage N4 adsorption protein C). P37749[AHO]+(NOG15807[S]) Hypothetical protein yefG (GalF transferase). P39828[U]+(NOG08761[S]) Minor curlin subunit precursor. P75920[U]+(NOG07563[S]) Glucans biosynthesis protein mdoC. P75707[C]+(COG3695[L]) Hypothetical protein ybaZ. Q9JMT1[U]+(COG3436[L]) YbhA protein. Q9JMS9[U]+(COG3436[L]) YbiB protein. P77377[AHO]+(COG2244[R]) Lipopolysaccharide biosynthesis protein wzxC. P27834[U]+(COG2244[R]) WzxE protein. P37746[AHIO]+(COG2244[R]) Putative O-antigen transporter. P27128[AHO]+(COG1442[M]) Lipopolysaccharide 1,3-galactosyltransferase (EC 2.4.1.44). P27129[AHO]+(COG1442[M]) Lipopolysaccharide 1,2-glucosyltransferase (EC 2.4.1.58). P36667[AHO]+(COG1216[R]) Putative lipopolysaccharide biosynthesis glycosyl transferase wbbL (EC 2.-.-.-). [cluster '11' has 14 of 23 proteins with EC-number annotated.] Cluster '117' (COG majority vote 'metab', protein majority vote 'go_metab_others', 4 proteins in cluster) BIOTIN-SYNTHESIS-PWY BIOTIN-SYNTHESIS-PWY BIOTIN-SYNTHESIS-PWY ENZYME: BIOB_ECOLI P12996[O] (COG0502[H]) Biotin synthase (EC 2.8.1.6) (Biotin synthetase). ENZYME: BIOA_ECOLI P12995[GO] (COG0161[H]) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase). ENZYME: BIOD_ECOLI P13000[O] (COG0132[H]) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin synthase) (DTB synthetase) (DTBS). P77201[O]*(COG0132[H]) Putative dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin synthase) (DTB synthetase) (DTBS). [cluster '117' has 4 of 4 proteins with EC-number annotated.] Cluster '30' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 11 proteins in cluster) ENTBACSYN-PWY MENAQUINONESYN-PWY MENAQUINONESYN-PWY MENAQUINONESYN-PWY MENAQUINONESYN-PWY MENAQUINONESYN-PWY ENZYME: MENC_ECOLI P29208[LO] (NOG21029[S]) O-succinylbenzoate-CoA synthase (EC 4.2.1.-) (OSB synthase) (OSBS) (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase) (O-succinylbenzoyl- CoA synthase). ENZYME: MENA_ECOLI P32166[O] (COG1575[H]) 1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.-) (DHNA- octaprenyltransferase). ENZYME: MENF_ECOLI P38051[O] (COG1169[H] [Q]) Menaquinone-specific isochorismate synthase (EC 5.4.99.6) (Isochorismate mutase). ENZYME: MEND_ECOLI P17109[O] (COG1165[H]) Menaquinone biosynthesis protein menD [Includes: 2-succinyl-6-hydroxy- 2,4-cyclohexadiene-1-carboxylate synthase (EC 4.1.3.-) (SHCHC synthase); 2-oxoglutarate decarboxylase (EC 4.1.1.71) (Alpha- ketoglutarate decarboxylase) (KDC)]. ENZYME: MENB_ECOLI P27290[LO] (COG0447[H]) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid synthetase) (DHNA synthetase). P76343[U]+(COG2717[S]) Hypothetical protein yedZ. P52077[U]+(COG2153[R]) Protein elaA. P76342[B]+(COG2041[R]) Hypothetical protein yedY. P76252[I]+(COG1292[M]) Probable transport protein yeaV. P17447[I]+(COG1292[M]) High-affinity choline transport protein. P31553[I]+(COG1292[M]) Probable carnitine transporter. [cluster '30' has 5 of 11 proteins with EC-number annotated.] Cluster '121' (COG majority vote 'metab', protein majority vote 'go_metab_others', 3 proteins in cluster) PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY ENZYME: NADA_ECOLI P11458[O] (COG0379[H]) Quinolinate synthetase A. ENZYME: NADC_ECOLI P30011[O] (COG0157[H]) Nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase). ENZYME: NADB_ECOLI P10902[BO] (COG0029[H]) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate synthetase B). [cluster '121' has 2 of 3 proteins with EC-number annotated.] Cluster '336' (COG majority vote 'metab', protein majority vote 'go_amino', 2 proteins in cluster) CYSTSYN-PWY CYSTSYN-PWY ENZYME: CYSM_ECOLI P16703[GM] (COG0031[E]) Cysteine synthase B (EC 4.2.99.8) (O-acetylserine sulfhydrylase B) (O-acetylserine (Thiol)-lyase B) (CSase B). ENZYME: CYSK_ECOLI P11096[GM] (COG0031[E]) Cysteine synthase A (EC 4.2.99.8) (O-acetylserine sulfhydrylase A) (O-acetylserine (Thiol)-lyase A) (CSase A) (Sulfate starvation-induced protein 5) (SSI5). [cluster '336' has 2 of 2 proteins with EC-number annotated.] Cluster '211' (COG majority vote 'metab', protein majority vote 'go_amino', 5 proteins in cluster) POLYAMSYN-PWY ORNDEG-PWY DAPLYSINESYN-PWY ARGDEG-PWY POLYAMSYN-PWY DAPLYSINESYN-PWY POLYAMSYN-PWY ORNDEG-PWY ENZYME: ADIA_ECOLI P28629[G] (COG1982[E]) Biodegradative arginine decarboxylase (EC 4.1.1.19) (ADC). ENZYME: DCLY_ECOLI P23892[G] (COG1982[E]) Lysine decarboxylase, inducible (EC 4.1.1.18) (LDC). ENZYME: DCOR_ECOLI P21169[GLO] (COG1982[E]) Ornithine decarboxylase, constitutive (EC 4.1.1.17). ENZYME: DCOS_ECOLI P24169[GLO] (COG1982[E]) Ornithine decarboxylase, inducible (EC 4.1.1.17). ENZYME: DCLZ_ECOLI P52095[G] (COG1982[E]) Lysine decarboxylase, constitutive (EC 4.1.1.18) (LDC). [cluster '211' has 5 of 5 proteins with EC-number annotated.] Cluster '17' (COG majority vote 'metab', protein majority vote 'mix', 16 proteins in cluster) ENTBACSYN-PWY ENTBACSYN-PWY MENAQUINONESYN-PWY ENTBACSYN-PWY ENTBACSYN-PWY ENZYME: ENTC_ECOLI P10377[GLMO] (NOG21003[S]) Isochorismate synthase entC (EC 5.4.99.6) (Isochorismate mutase). ENZYME: ENTD_ECOLI P19925[GILMO] (COG2977[Q]) 4'-phosphopantetheinyl transferase entD (EC 2.7.8.-) (Enterobactin synthetase component D) (Enterochelin synthase D). ENZYME: ENTE_ECOLI P10378[GILMO] (COG1021[Q]) Enterobactin synthetase component E (Enterochelin synthase E) [Includes: 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) (Dihydroxybenzoic acid-activating enzyme); S- dihydroxybenzoyltransferase (EC 2.3.1.-)]. ENZYME: ENTF_ECOLI P11454[GILMO] (COG1020[Q] COG3319[Q]) Enterobactin synthetase component F (EC 2.7.7.-) (Enterochelin synthase F) (Serine activating enzyme) (Seryl-AMP ligase). P18393[U]+(COG3251[S]) Hypothetical protein ybdZ. P39395[U]+(COG2879[S]) Hypothetical protein yjiX. P23518[U]+(COG2879[S]) Hypothetical protein ybdD. P76502[U]+(COG2062[T]) Phosphohistidine phosphatase sixA (EC 3.1.3.-) (RX6). P27845[U]+(COG2050[Q]) Hypothetical protein yigI. P76084[U]+(COG2050[Q]) Phenylacetic acid degradation protein paaI. P15050[U]+(COG2050[Q]) Hypothetical protein ybdB (p15). P77781[U]+(COG2050[Q]) Hypothetical protein ydiI. P15078[K]+(COG1966[T]) Carbon starvation protein A. P39396[K]+(COG1966[T]) Hypothetical protein yjiY. P15048[GILMO]+(COG1535[Q] COG3433[Q]) Isochorismatase (EC 3.3.2.1) (Isochorismate lyase) (2,3 dihydro-2,3 dihydroxybenzoate synthase) (Enterobactin synthetase component B) (Enterochelin synthase B). P45524[U]+(COG0429[R]) Hypothetical protein yheT. [cluster '17' has 6 of 16 proteins with EC-number annotated.] Cluster '16' (COG majority vote 'metab', protein majority vote 'mix', 22 proteins in cluster) ARABCAT-PWY LYXMET-PWY RHAMCAT-PWY FUCCAT-PWY RHAMCAT-PWY GLYCOLATEMET-PWY RHAMCAT-PWY ARABCAT-PWY ARABCAT-PWY ARABCAT-PWY RHAMCAT-PWY GLYCEROLMETAB-PWY FUCCAT-PWY DARABCAT-PWY FUCCAT-PWY DARABCAT-PWY FUCCAT-PWY DARABCAT-PWY ENZYME: FUCK_ECOLI P11553[A] (NOG21021[S]) L-fuculokinase (EC 2.7.1.51) (L-fuculose kinase). ENZYME: RHAB_ECOLI P32171[A] (NOG21020[S]) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase). ENZYME: FUCO_ECOLI P11549[L] (NOG21017[S]) Lactaldehyde reductase (EC 1.1.1.77) (Propanediol oxidoreductase). ENZYME: RHAA_ECOLI P32170[U] (NOG04335[S]) L-rhamnose isomerase (EC 5.3.1.14). ENZYME: FUCI_ECOLI P11552[AN] (COG2407[G]) L-fucose isomerase (EC 5.3.1.25). ENZYME: ARAA_ECOLI P08202[ALN] (COG2160[G]) L-arabinose isomerase (EC 5.3.1.4). ENZYME: ARAB_ECOLI P08204[AN] (COG1069[C]) L-ribulokinase (EC 2.7.1.16). ENZYME: GLDA_ECOLI P32665[AHLN] (COG0371[C]) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH). ENZYME: SGBE_ECOLI P37680[U] (COG0235[G]) Probable sugar isomerase sgbE (EC 5.1.-.-). ENZYME: ARAD_ECOLI P08203[AN] (COG0235[G]) L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (Phosphoribulose isomerase). ENZYME: FUCA_ECOLI P11550[U] (COG0235[G]) L-fuculose phosphate aldolase (EC 4.1.2.17) (L-fuculose-1-phosphate aldolase). ENZYME: RHAD_ECOLI P32169[U] (COG0235[G]) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19). P37686[L]*(NOG21017[S]) Probable alcohol dehydrogenase (EC 1.1.1.1). P77713[A]+(COG3507[G]) Putative beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase). Q46889[U]+(COG3395[S]) Hypothetical protein ygbK. P32156[U]+(COG3254[S]) Hypothetical protein yiiL. P11555[U]+(COG1869[G]) Fucose operon fucU protein. P04982[I]+(COG1869[G]) High affinity ribose transport protein rbsD. P11551[U]+(COG0738[G]) L-fucose permease. P45579[L]*(COG0371[C]) Hypothetical oxidoreductase ybdH (EC 1.1.-.-). Q46890[U]*(COG0235[G]) Hypothetical aldolase class II protein ygbL. P39306[U]*(COG0235[G]) Probable sugar isomerase sgaE (EC 5.1.-.-). [cluster '16' has 16 of 22 proteins with EC-number annotated.] Cluster '118' (COG majority vote 'metab', protein majority vote 'go_amino', 5 proteins in cluster) HCAMHPDEG-PWY LEUSYN-PWY LEUSYN-PWY LEUSYN-PWY ENZYME: LEU3_ECOLI P30125[GLM] (COG0473[E]) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH). ENZYME: MHPE_ECOLI P51020[LN] (COG0119[E]) 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.-) (HOA). ENZYME: LEU1_ECOLI P09151[GM] (COG0119[E]) 2-isopropylmalate synthase (EC 4.1.3.12) (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase). ENZYME: LEUD_ECOLI P30126[GLM] (COG0066[E]) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI). P76251[L]*(COG0473[E]) Probable tartrate dehydrogenase (EC 1.1.1.93) (TDH). [cluster '118' has 5 of 5 proteins with EC-number annotated.] Cluster '18' (COG majority vote 'unknown', protein majority vote 'mix', 19 proteins in cluster) GALACTITOLCAT-PWY GALACTITOLCAT-PWY GALACTITOLCAT-PWY GLUAMCAT-PWY GALACTITOLCAT-PWY ENZYME: AGAY_ECOLI P42908[AN] (NOG21014[S]) Tagatose-bisphosphate aldolase agaY (EC 4.1.2.-). ENZYME: GATY_ECOLI P37192[AN] (NOG21014[S]) Tagatose-bisphosphate aldolase gatY (EC 4.1.2.-). ENZYME: GATZ_ECOLI P37191[A] (NOG04834[S]) Putative tagatose 6-phosphate kinase gatZ (EC 2.7.1.144). ENZYME: AGAZ_ECOLI P42903[U] (NOG04834[S]) Putative tagatose 6-phosphate kinase agaZ (EC 2.7.1.144). ENZYME: NAGA_ECOLI P15300[A] (COG1820[G]) N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (GlcNAc 6-P deacetylase). P42911[I]+(NOG06943[S]) PTS system, N-acetylgalactosamine-specific IID component (EIID-AGA) (N-acetylgalactosamine-permease IID component) (Phosphotransferase enzyme II, D component). P76263[U]+(NOG06071[S]) Hypothetical protein yobD. P42905[I]+(NOG05378[S]) PTS system, N-acetylgalactosamine-specific IIC component 2 (EIIC-AGA') (N-acetylgalactosamine-permease IIC component 2). P08187[I]+(NOG04865[S]) PTS system, mannose-specific IIC component (EIIC-Man) (Mannose- permease IIC component) (Phosphotransferase enzyme II, C component) (EII-P-Man). P08188[I]+(NOG04356[S]) PTS system, mannose-specific IID component (EIID-Man) (Mannose- permease IID component) (Phosphotransferase enzyme II, D component) (EII-M-Man). P42909[I]+(COG3444[G]) PTS system, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA) (N-acetylgalactosamine-permease IIB component 1) (Phosphotransferase enzyme II, B component 1) (EC 2.7.1.69). P42904[I]+(COG3444[G]) PTS system, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA') (N-acetylgalactosamine-permease IIB component 2) (Phosphotransferase enzyme II, B component 2) (EC 2.7.1.69). P08186[I]+(COG2893[G] COG3444[G]) PTS system, mannose-specific IIAB component (EIIAB-Man) (Mannose- permease IIAB component) (Phosphotransferase enzyme II, AB component) (EC 2.7.1.69) (EIII-Man). P36881[I]+(COG2893[G]) Putative PTS system IIA component yadI (EC 2.7.1.69). P33019[U]+(COG2855[S]) Hypothetical protein yeiH. P42907[A]+(COG2222[M]) Putative tagatose-6-phosphate ketose/aldose isomerase (EC 5.-.-.-). P45540[U]+(COG2222[M]) Hypothetical protein yhfN. P42906[A]*(COG1820[G]) Putative N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.-). P54746[A]+(COG0383[G]) Hypothetical protein ybgG. [cluster '18' has 11 of 19 proteins with EC-number annotated.] Cluster '66' (COG majority vote 'metab', protein majority vote 'mix', 6 proteins in cluster) GLUCONEO-PWY TRESYN-PWY TREDEGLOW-PWY TRESYN-PWY ENZYME: OTSB_ECOLI P31678[AO] (COG1877[G]) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) (TPP). ENZYME: GLPX_ECOLI P28860[AHLN] (COG1494[G]) Protein glpX. ENZYME: OTSA_ECOLI P31677[AO] (COG0380[G]) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphate glucosyltransferase). P38097[D]+(COG2199[T] COG2200[T] COG2202[T] COG3447[T]) Hypothetical protein yegE. P21437[AHLN]*(COG1494[G]) Hypothetical protein yggF. Q46802[D]+(COG1221[K] [T] COG2202[T] COG2203[T]) Hypothetical sigma-54-dependent transcriptional regulator ygeV. [cluster '66' has 2 of 6 proteins with EC-number annotated.] Cluster '92' (COG majority vote 'metab', protein majority vote 'go_metab_others', 4 proteins in cluster) ACETOACETATE-DEG-PWY ACETOACETATE-DEG-PWY ENZYME: ATOA_ECOLI P76459[HL] (COG2057[I]) Acetate CoA-transferase beta subunit (EC 2.8.3.8) (Acetyl- CoA:acetoacetate CoA transferase beta subunit). ENZYME: ATOD_ECOLI P76458[HL] (COG1788[I]) Acetate CoA-transferase alpha subunit (EC 2.8.3.8) (Acetyl- CoA:acetoacetate CoA transferase alpha subunit). P76460[I]+(COG2031[I]) Short-chain fatty acids transporter. P37766[L]*(COG1788[I] COG2057[I]) Hypothetical protein ydiF. [cluster '92' has 2 of 4 proteins with EC-number annotated.] Cluster '161' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) KETOGLUCONMET-PWY KETOGLUCONMET-PWY ENZYME: DKGB_ECOLI P30863[U] (COG0656[R]) 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) (2,5-DKG reductase B) (2,5-DKGR B) (25DKGR-B) (AKR5D). ENZYME: DKGA_ECOLI Q46857[U] (COG0656[R]) 2,5-diketo-D-gluconic acid reductase A (EC 1.1.1.274) (2,5-DKG reductase A) (2,5-DKGR A) (25DKGR-A) (AKR5C). P76234[U]*(COG0656[R]) Hypothetical protein yeaE. P76187[U]*(COG0656[R]) Hypothetical oxidoreductase ydhF (EC 1.-.-.-). P77240[U]+(COG0401[S]) Hypothetical protein yqaE. [cluster '161' has 3 of 5 proteins with EC-number annotated.] Cluster '44' (COG majority vote 'mixed', protein majority vote 'U', 7 proteins in cluster) THISYN-PWY THISYN-PWY THISYN-PWY ENZYME: THIM_ECOLI P76423[O] (COG2145[H]) Hydroxyethylthiazole kinase (EC 2.7.1.50) (4-methyl-5-beta- hydroxyethylthiazole kinase) (Thz kinase) (TH kinase). ENZYME: THIE_ECOLI P30137[O] (COG0352[H]) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase). ENZYME: THID_ECOLI P76422[O] (COG0351[H]) Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate kinase) (HMP-P kinase). P76492[U]+(COG3013[S]) Protein yfbU. P77391[U]+(COG2766[T]) Hypothetical protein yeaG. P29013[U]+(COG2719[S]) Hypothetical protein ycgB. P76235[U]+(COG2718[S]) Hypothetical protein yeaH. [cluster '44' has 3 of 7 proteins with EC-number annotated.] Cluster '25' (COG majority vote 'metab', protein majority vote 'go_metab_others', 14 proteins in cluster) ANARESP1-PWY PYRUVDEHYD-PWY GLYCOLYSIS/TCA/GLYOX-BYPASS GLYOXDEG-PWY TCA ANARESP1-PWY 1CMET2-PWY PYRUVDEHYD-PWY GLYCLEAV-PWY GLYCOLYSIS/TCA/GLYOX-BYPASS GLYOXDEG-PWY AERESPDON-PWY TCA 1CMET2-PWY AERESPDON-PWY TCA AERESPDON-PWY TCA TCA ENZYME: DHSD_ECOLI P10445[B] (COG2142[C]) Succinate dehydrogenase hydrophobic membrane anchor protein. ENZYME: DHSC_ECOLI P10446[B] (COG2009[C]) Succinate dehydrogenase cytochrome b-556 subunit. ENZYME: DLDH_ECOLI P00391[ABN] (COG1249[C]) Dihydrolipoamide dehydrogenase (EC 1.8.1.4) (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Glycine cleavage system L protein). ENZYME: METF_ECOLI P00394[GM] (COG0685[E]) 5,10-methylenetetrahydrofolate reductase (EC 1.7.99.5). ENZYME: ODO1_ECOLI P07015[ALN] (COG0567[C]) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) (Alpha- ketoglutarate dehydrogenase). ENZYME: ODP2_ECOLI P06959[ALN] (COG0508[C]) Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) (E2). ENZYME: DHSB_ECOLI P07014[B] (COG0479[C]) Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1). P77303[U]+(COG3093[N]) Hypothetical protein ybaQ. P76125[U]+(COG3093[N]) Hypothetical protein yddM. P52121[U]+(COG2867[I]) Hypothetical protein yfjG. P46442[U]+(COG1485[R]) Hypothetical protein yhcM. P27306[B]*(COG1249[C]) Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) (STH) (NAD(P)(+) transhydrogenase [B-specific]). P77212[B]*(COG1249[C]) Probable pyridine nucleotide-disulfide oxidoreductase ykgC. P07016[L]*(COG0508[C]) Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) (E2). [cluster '25' has 7 of 14 proteins with EC-number annotated.] Cluster '97' (COG majority vote 'mixed', protein majority vote 'go_carbo_lipid', 3 proteins in cluster) COLANSYN-PWY MANGDPMET-PWY COLANSYN-PWY MANGDPMET-PWY ENZYME: MANB_ECOLI P24175[AHO] (COG1109[G]) Phosphomannomutase (EC 5.4.2.8) (PMM). ENZYME: MANC_ECOLI P24174[AHO] (COG0836[M]) Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) (GDP- mannose pyrophosphorylase) (GMP). P76329[L]+(NOG04961[S]) Putative mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70) (MPGP). [cluster '97' has 3 of 3 proteins with EC-number annotated.] Cluster '28' (COG majority vote 'mixed', protein majority vote 'mix', 20 proteins in cluster) GLCMANNANAUT-PWY DRIBOPMET-PWY DEOXYPYRNUCMET-PWY PYR-RIBONUCMET-PWY GLCMANNANAUT-PWY GLCMANNANAUT-PWY GLUAMCAT-PWY ENZYME: NPL_ECOLI P06995[U] (NOG21027[S]) N-acetylneuraminate lyase subunit (EC 4.1.3.3) (N-acetylneuraminic acid aldolase) (N-acetylneuraminate pyruvate lyase) (Nalase). ENZYME: YHCJ_ECOLI P45426[U] (COG3010[G]) Hypothetical protein yhcJ. ENZYME: YHCI_ECOLI P45425[U] (COG1940[K]) Hypothetical protein yhcI. ENZYME: NAGB_ECOLI P09375[A] (COG0363[G]) Glucosamine-6-phosphate isomerase (EC 3.5.99.6) (Glucosamine-6- phosphate deaminase) (GNPDA) (GlcN6P deaminase). ENZYME: CDD_ECOLI P13652[U] (COG0295[F]) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase) (CDA). P23917[U]*(COG1940[K]) Hypothetical protein yajF. P76586[U]*(COG1940[K]) Hypothetical protein yphH. P75959[U]*(COG1940[K]) Hypothetical protein ycfX. P50456[AD]*(COG1940[K]) Mlc protein (Making large colonies protein). P32718[A]*(COG1940[K]) D-allose kinase (EC 2.7.1.55) (Allokinase). P15301[AD]*(COG1940[K]) N-acetylglucosamine repressor. P17411[A]+(COG1486[G]) 6-phospho-beta-glucosidase (EC 3.2.1.86) (Cellobiose-6-phosphate hydrolase). P31450[A]+(COG1486[G]) Probable 6-phospho-alpha-glucosidase (EC 3.2.1.122). P06720[A]+(COG1486[G]) Alpha-galactosidase (EC 3.2.1.22) (Melibiase). P76418[U]+(COG1397[O]) Hypothetical protein yegU. P45476[U]+(COG1242[R]) Hypothetical protein yhcC. P22255[U]+(COG1218[P]) CysQ protein. P42912[A]*(COG0363[G]) Putative galactosamine-6-phosphate isomerase (EC 5.3.1.-) (Galactosamine-6-phosphate deaminase). P31470[A]*(COG0363[G]) Hypothetical protein yieK. P31216[U]+(COG0012[R]) Probable GTP-binding protein ychF (ORF-3). [cluster '28' has 8 of 20 proteins with EC-number annotated.] Cluster '41' (COG majority vote 'metab', protein majority vote 'mix', 15 proteins in cluster) GLYCOLATEMET-PWY PWY0-41 PWY0-41 GLUCARGALACTSUPER-PWY GALACTARDEG-PWY GLUCARDEG-PWY PWY0-41 GLYOXDEG-PWY GLYOXYLATE-BYPASS ENZYME: ALLC_ECOLI P77425[EN] (NOG21035[S]) Allantoate amidohydrolase (EC 3.5.3.-). ENZYME: ALLA_ECOLI P77731[U] (COG3194[E]) Ureidoglycolate hydrolase (EC 3.5.3.19). ENZYME: MASY_ECOLI P08997[U] (COG2225[C]) Malate synthase A (EC 4.1.3.2) (MSA). ENZYME: GRK2_ECOLI P23524[U] (COG1929[G]) Glycerate kinase 2 (EC 2.7.1.31). ENZYME: GRK1_ECOLI P77364[U] (COG1929[G]) Glycerate kinase 1 (EC 2.7.1.31). P75713[U]+(COG3257[S]) Hypothetical protein ylbA. P75712[I]+(COG1953[F] [H]) Putative allantoin permease (Allantoin transport protein). P77732[D]+(COG1414[K]) Hypothetical transcriptional regulator yfaX. P77569[DLN]+(COG1414[K]) Mhp operon transcriptional activator. P77734[D]+(COG1414[K]) Negative regulator of allantoin and glyoxylate utilization operons (Transcriptional regulator allR). P77300[D]+(COG1414[K]) Hypothetical transcriptional regulator yagI. P76268[D]+(COG1414[K]) Transcriptional regulator kdgR. P16528[D]+(COG1414[K]) Acetate operon repressor. P37671[D]+(COG1414[K]) Hypothetical transcriptional regulator yiaJ. P39360[D]+(COG1414[K]) Hypothetical transcriptional regulator yjhI. [cluster '41' has 5 of 15 proteins with EC-number annotated.] Cluster '162' (COG majority vote 'mixed', protein majority vote 'U', 3 proteins in cluster) TCA ANARESP1-PWY GLYOXYLATE-BYPASS PWY0-42 TCA ANARESP1-PWY GLYOXYLATE-BYPASS ENZYME: CISY_ECOLI P00891[U] (COG0372[C]) Citrate synthase (EC 4.1.3.7). ENZYME: PRPC_ECOLI P31660[U] (COG0372[C]) 2-methylcitrate synthase (EC 4.1.3.31) (Methylcitrate synthase) (Citrate synthase 2). P77243[U]+(COG2079[R]) 2-methylcitrate dehydratase (EC 4.2.1.79). [cluster '162' has 3 of 3 proteins with EC-number annotated.] Cluster '9' (COG majority vote 'metab', protein majority vote 'mix', 46 proteins in cluster) GALACTUROCAT-PWY XYLCAT-PWY GLUCOSE1PMETAB-PWY GLUCUROCAT-PWY GALACTCAT-PWY DRIBOPMET-PWY NONOXIPENT-PWY RIBOKIN-PWY GALACTCAT-PWY 1CMET2-PWY ENTNER-DOUDOROFF-PWY GLYOXDEG-PWY PWY0-41 NADPHOS-DEPHOS-PWY NADPHOS-DEPHOS-PWY AERESPDON-PWY ANARESPDON-PWY XYLCAT-PWY GLUCUROCAT-PWY IDNCAT-PWY GLUCUROCAT-PWY GALACTUROCAT-PWY GLUCUROCAT-PWY GALACTUROCAT-PWY DRIBOPMET-PWY NONOXIPENT-PWY RIBOKIN-PWY GLUCONSUPER-PWY IDNCAT-PWY GLUCONSUPER-PWY IDNCAT-PWY ENZYME: UXAA_ECOLI P42604[U] (NOG21001[S]) Altronate hydrolase (EC 4.2.1.7) (Altronic acid hydratase). ENZYME: DGOK_ECOLI P31459[U] (NOG05935[S]) 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) (2-keto-3-deoxy- galactonokinase) (2-oxo-3-deoxygalactonate kinase). ENZYME: PNTA_ECOLI P07001[B] (COG3288[C]) NAD(P) transhydrogenase subunit alpha (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit alpha) (Nicotinamide nucleotide transhydrogenase subunit alpha). ENZYME: IDNK_ECOLI P39208[A] (COG3265[P]) Thermosensitive gluconokinase (EC 2.7.1.12) (Gluconate kinase 1). ENZYME: GNTK_ECOLI P46859[A] (COG3265[P]) Thermoresistant gluconokinase (EC 2.7.1.12) (Gluconate kinase 2). ENZYME: BGLR_ECOLI P05804[A] (COG3250[G]) Beta-glucuronidase (EC 3.2.1.31) (GUS) (Beta-D-glucuronoside glucuronosohydrolase). ENZYME: XYLA_ECOLI P00944[AN] (COG2115[G]) Xylose isomerase (EC 5.3.1.5) (D-xylulose keto-isomerase). ENZYME: ALLD_ECOLI P77555[L] (COG2055[C]) Ureidoglycolate dehydrogenase (EC 1.1.1.154). ENZYME: UXAC_ECOLI P42607[AN] (COG1904[G]) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase) (Uronic isomerase). ENZYME: UXUA_ECOLI P24215[AN] (COG1312[G]) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase). ENZYME: PNTB_ECOLI P07002[B] (COG1282[C]) NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit beta) (Nicotinamide nucleotide transhydrogenase subunit beta). ENZYME: DHNA_ECOLI P00393[B] (COG1252[C]) NADH dehydrogenase (EC 1.6.99.3). ENZYME: XYLB_ECOLI P09099[A] (COG1070[G]) Xylulose kinase (EC 2.7.1.17) (Xylulokinase). ENZYME: IDND_ECOLI P39346[A] (COG1063[R] [E]) L-idonate 5-dehydrogenase (EC 1.1.1.264). ENZYME: DGOA_ECOLI P31458[L] (COG0800[G] NOG21028[S]) DgoA protein [Includes: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) (6-phospho-2-dehydro-3-deoxygalactonate aldolase) (2- oxo-3-deoxygalactonate 6-phosphate aldolase); Galactonate dehydratase (EC 4.2.1.6)]. ENZYME: ALKH_ECOLI P10177[L] (COG0800[G]) KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2- dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) (Phospho-2- dehydro-3-deoxygluconate aldolase) (Phospho-2-keto-3-deoxygluconate aldolase) (2-keto-3-deoxy-6-phosphogluconate aldolase) (KDPG- aldolase)]. ENZYME: PURU_ECOLI P37051[LO] (COG0788[F]) Formyltetrahydrofolate deformylase (EC 3.5.1.10) (Formyl-FH(4) hydrolase). ENZYME: UXUB_ECOLI P39160[L] (COG0246[G]) D-mannonate oxidoreductase (EC 1.1.1.57) (Fructuronate reductase). ENZYME: UXAB_ECOLI P24214[L] (COG0246[G]) Altronate oxidoreductase (EC 1.1.1.58) (Tagaturonate reductase) (Tagaturonate dehydrogenase). ENZYME: TKT1_ECOLI P27302[U] (COG0021[G]) Transketolase 1 (EC 2.2.1.1) (TK 1). ENZYME: TKT2_ECOLI P33570[U] (COG0021[G]) Transketolase 2 (EC 2.2.1.1) (TK 2). P38104[L]*(NOG21028[S]) Starvation sensing protein rspA. P75907[U]+(NOG06539[S]) Hypothetical protein ycdS precursor. P11287[U]+(NOG05965[S]) Hypothetical protein yiaA. P37679[A]+(COG3623[G]) Putative hexulose-6-phosphate isomerase (EC 5.-.-.-) (HUMPI). P39305[A]+(COG3623[G]) Putative hexulose-6-phosphate isomerase (EC 5.-.-.-) (HUMPI). P37672[L]*(COG2055[C]) Hypothetical oxidoreductase yiaK (EC 1.1.1.-). P30178[L]*(COG2055[C]) Hypothetical oxidoreductase ybiC (EC 1.1.1.-). P39380[U]+(COG1859[J]) RNA 2'-phosphotransferase (EC 2.7.-.-). P55138[A]*(COG1070[G]) Hypothetical sugar kinase ygcE. P77432[A]*(COG1070[G]) Hypothetical sugar kinase ydeV. P38105[U]*(COG1063[R] [E]) Starvation sensing protein rspB (EC 1.1.1.-). P77539[U]*(COG1063[R] [E]) Hypothetical zinc-type alcohol dehydrogenase-like protein ydjL. P77280[U]*(COG1063[R] [E]) Hypothetical zinc-type alcohol dehydrogenase-like protein ydjJ. P77316[U]*(COG1063[R] [E]) Hypothetical zinc-type alcohol dehydrogenase-like protein ybdR. P77360[U]*(COG1063[R] [E]) Hypothetical zinc-type alcohol dehydrogenase-like protein yphC. P39400[U]*(COG1063[R] [E]) Hypothetical zinc-type alcohol dehydrogenase-like protein yjjN. P52048[U]*(COG1063[R] [E]) Hypothetical protein yggP. P76043[U]*(COG1063[R] [E]) Hypothetical zinc-type alcohol dehydrogenase-like protein ycjQ. P76519[U]+(COG0679[R]) Hypothetical protein yfdV. P39173[U]+(COG0676[G]) Unknown protein from 2D-page (Spots T26/PR37). P39304[O]+(COG0269[G]) Probable hexulose-6-phosphate synthase (EC 4.1.2.-) (HUMPS) (D-arabino 3-hexulose 6-phosphate formaldehyde lyase). P37678[O]+(COG0269[G]) Probable hexulose-6-phosphate synthase (EC 4.1.2.-) (HUMPS) (D-arabino 3-hexulose 6-phosphate formaldehyde lyase). P77260[L]*(COG0246[G]) Hypothetical oxidoreductase ydfI (EC 1.-.-.-). P33029[L]*(COG0246[G]) Hypothetical oxidoreductase yeiQ (EC 1.-.-.-). P15723[U]+(COG0232[F]) Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) (dGTPase) (dGTP triphosphohydrolase). [cluster '9' has 32 of 46 proteins with EC-number annotated.] Cluster '168' (COG majority vote 'metab', protein majority vote 'go_amino', 4 proteins in cluster) SO4ASSIM-PWY SO4ASSIM-PWY ENZYME: CYSN_ECOLI P23845[FGM] (COG2895[P]) Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase large subunit). ENZYME: CYSD_ECOLI P21156[GLM] (COG0175[H] [E]) Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit). P17854[GLM]*(COG0175[H] [E]) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8) (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'- phosphoadenylylsulfate reductase) (PAPS sulfotransferase). P77216[U]*(COG0175[H] [E]) Hypothetical protein ybdN. [cluster '168' has 3 of 4 proteins with EC-number annotated.] Cluster '80' (COG majority vote 'unknown', protein majority vote 'mix', 8 proteins in cluster) ARO-PWY ARO-PWY ARO-PWY ENZYME: AROG_ECOLI P00886[GMO] (COG0722[E]) Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive (EC 4.1.2.15) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase). ENZYME: AROH_ECOLI P00887[GMO] (COG0722[E]) Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive (EC 4.1.2.15) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase). ENZYME: AROF_ECOLI P00888[GMO] (COG0722[E]) Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive (EC 4.1.2.15) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase). P26603[U]+(COG3247[S]) HdeD protein. P20101[U]+(COG2912[S]) Protein sirB1. P75831[I]+(COG0577[R] COG1136[R]) Macrolide-specific ABC-type efflux carrier. P75958[I]+(COG0577[R]) Lipoprotein releasing system transmembrane protein lolE. P75956[I]+(COG0577[R]) Lipoprotein releasing system transmembrane protein lolC. [cluster '80' has 3 of 8 proteins with EC-number annotated.] Cluster '318' (COG majority vote 'metab', protein majority vote 'mix', 2 proteins in cluster) FERMENTATION-PWY PYRUVOX-PWY ACETATEUTIL-PWY THREOCAT-PWY FERMENTATION-PWY PYRUVOX-PWY ACETATEUTIL-PWY THREOCAT-PWY ENZYME: ACKA_ECOLI P15046[AL] (COG0282[C]) Acetate kinase (EC 2.7.2.1) (Acetokinase). ENZYME: TDCD_ECOLI P11868[AL] (COG0282[C]) Propionate kinase (EC 2.7.2.-). [cluster '318' has 2 of 2 proteins with EC-number annotated.] Cluster '139' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 5 proteins in cluster) PHOSLIPSYN-PWY PHOSLIPSYN-PWY PHOSLIPSYN-PWY ENZYME: PSS_ECOLI P23830[HL] (COG1502[I]) CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) (Phosphatidylserine synthase). ENZYME: YBHO_ECOLI P75771[L] (COG1502[I]) Hypothetical protein ybhO. ENZYME: CLS_ECOLI P31071[HL] (COG1502[I]) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase) (CL synthase). P75772[U]+(COG3568[R]) Hypothetical protein ybhP. P75919[L]*(COG1502[I]) Hypothetical protein ymdC. [cluster '139' has 2 of 5 proteins with EC-number annotated.] Cluster '10' (COG majority vote 'mixed', protein majority vote 'mix', 28 proteins in cluster) TREDEGLOW-PWY ASPARAGINESYN-PWY TREDEGLOW-PWY COBALSYN-PWY COBALSYN-PWY COBALSYN-PWY ENZYME: ASNA_ECOLI P00963[FGM] (COG2502[E]) Aspartate--ammonia ligase (EC 6.3.1.1) (Asparagine synthetase A). ENZYME: COBU_ECOLI P46886[O] (COG2087[H]) Bifunctional cobalamin biosynthesis protein cobU [Includes: Cobinamide kinase; Cobinamide phosphate guanylyltransferase]. ENZYME: COBT_ECOLI P36562[O] (COG2038[H]) Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase). ENZYME: TREF_ECOLI P37196[A] (COG1626[G]) Probable cytoplasmic trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase). ENZYME: TREA_ECOLI P13482[A] (COG1626[G]) Periplasmic trehalase precursor (EC 3.2.1.28) (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase). ENZYME: COBS_ECOLI P36561[O] (COG0368[H]) Cobalamin [5'-phosphate] synthase (EC 2.-.-.-). P25728[U]+(NOG08918[S]) Hypothetical protein ygbA. P23485[U]+(NOG05973[S]) Protein fecR. P76123[U]+(NOG04751[S]) Hypothetical protein yddK. P45808[U]+(COG2832[S]) Hypothetical protein ybaN. P75902[U]+(COG2822[P]) Protein ycdO. P76192[B]+(COG2414[C]) Hypothetical protein ydhV. Q46871[U]+(COG2375[P]) Hypothetical protein yqjH. P23867[I]+(COG1970[M]) Large-conductance mechanosensitive channel. P28634[U]+(COG1720[S]) Hypothetical protein yaeB. P15031[I]+(COG1120[H] [P]) Iron(III) dicitrate transport ATP-binding protein fecE. P07821[I]+(COG1120[H] [P]) Ferrichrome transport ATP-binding protein fhuC. P23878[I]+(COG1120[H] [P]) Ferric enterobactin transport ATP-binding protein fepC. P06611[I]+(COG1120[H] [P]) Vitamin B12 transport ATP-binding protein btuD (EC 3.6.3.33) (Vitamin B12-transporting ATPase). P75901[U]+(COG0672[P]) Hypothetical protein ycdN. P07822[I]+(COG0614[P]) Ferrichrome-binding periplasmic protein precursor. P14609[I]+(COG0614[P]) Ferrienterobactin-binding periplasmic protein precursor. P37028[I]+(COG0614[P]) Vitamin B12 transport protein btuF precursor. P15028[I]+(COG0614[P]) Iron(III) dicitrate-binding periplasmic protein precursor. P56262[U]+(COG0412[Q]) Putative carboxymethylenebutenolidase (EC 3.1.1.45) (Dienelactone hydrolase) (DLH). Q46850[U]+(COG0412[Q]) ORF_F141. Q46849[U]+(COG0412[Q]) ORF_F136. P76273[U]+(COG0144[J] COG3270[S]) Hypothetical protein yebU. [cluster '10' has 7 of 28 proteins with EC-number annotated.] Cluster '129' (COG majority vote 'metab', protein majority vote 'mix', 6 proteins in cluster) GALACTARDEG-PWY GLYCOLATEMET-PWY PWY0-41 GLUCARDEG-PWY GALACTARDEG-PWY GLYCOLATEMET-PWY PWY0-41 GLUCARDEG-PWY ENZYME: GLXR_ECOLI P77161[AN] (COG2084[I]) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) (TSAR). ENZYME: GARR_ECOLI P23523[AN] (COG2084[I]) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) (TSAR). P30147[U]+(COG3622[G]) Hydroxypyruvate isomerase (EC 5.3.1.22). Q46891[C]+(COG3622[G]) Hypothetical protein ygbM. Q46888[U]*(COG2084[I]) Hypothetical oxidoreductase ygbJ (EC 1.1.-.-). P32142[AN]*(COG2084[I]) Hypothetical oxidoreductase yihU (EC 1.1.-.-). [cluster '129' has 5 of 6 proteins with EC-number annotated.] Cluster '6' (COG majority vote 'mixed', protein majority vote 'mix', 40 proteins in cluster) GLUCONEO-PWY AERESPDON-PWY TCA HCAMHPDEG-PWY FERMENTATION-PWY FERMENTATION-PWY PYRUVOX-PWY ACETATEUTIL-PWY THREOCAT-PWY FOLSYN-PWY FOLSYN-PWY FOLSYN-PWY FOLSYN-PWY ENZYME: FOLB_ECOLI P31055[U] (COG1539[H]) Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA). ENZYME: DHSA_ECOLI P10444[B] (COG1053[C]) Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1). ENZYME: ADHE_ECOLI P17547[L] (COG1012[C] NOG21016[S]) Aldehyde-alcohol dehydrogenase [Includes: Alcohol dehydrogenase (EC 1.1.1.1) (ADH); Acetaldehyde dehydrogenase [acetylating] (EC 1.2.1.10) (ACDH); Pyruvate-formate-lyase deactivase (PFL deactivase)]. ENZYME: HPPK_ECOLI P26281[O] (COG0801[H]) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PPPK). ENZYME: GCH1_ECOLI P27511[LO] (COG0302[H]) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I). ENZYME: DHPS_ECOLI P26282[O] (COG0294[H]) Dihydropteroate synthase (EC 2.5.1.15) (DHPS) (Dihydropteroate pyrophosphorylase). ENZYME: PTA_ECOLI P39184[L] (COG0280[C] COG0857[R]) Phosphate acetyltransferase (EC 2.3.1.8) (Phosphotransacetylase). ENZYME: MAO2_ECOLI P76558[L] (COG0280[C] COG0281[C]) NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME). P76553[L]*(NOG21016[S]) Ethanolamine utilization protein eutG. P76540[U]+(NOG11663[S]) Ethanolamine utilization protein eutK precursor. P77633[U]+(NOG08749[S]) Ethanolamine utilization protein eutN. P76556[U]+(NOG07576[S]) Ethanolamine utilization protein eutP. P76555[U]+(NOG07002[S]) Ethanolamine utilization protein eutQ. P76554[U]+(NOG06996[S]) Ethanolamine utilization cobalamin adenosyltransferase (EC 2.5.1.17). P77606[U]+(NOG06955[S]) Ethanolamine utilization protein eutM precursor. P76557[U]+(NOG06953[S]) Ethanolamine utilization protein eutS. P76541[U]+(NOG04878[S]) Ethanolamine utilization protein eutL. P19636[U]+(NOG04871[S]) Ethanolamine ammonia-lyase light chain (EC 4.3.1.7) (Ethanolamine ammonia-lyase small subunit). P76551[U]+(NOG04867[S]) Ethanolamine utilization protein eutA. P19635[U]+(NOG04080[S]) Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) (Ethanolamine ammonia-lyase large subunit). P76552[I]+(COG3192[E]) Ethanolamine utilization protein eutH (Putative ethanolamine transporter). P46837[U]+(COG2183[R]) Protein yhgF. P33364[AEN]+(COG1686[M]) Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine- endopeptidase) (EC 3.4.99.-) (DD-endopeptidase). P08506[AEN]+(COG1686[M]) Penicillin-binding protein 6 precursor (D-alanyl-D-alanine carboxypeptidase fraction C) (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (PBP-6). P33013[AEN]+(COG1686[M]) Penicillin-binding protein 6B precursor (D-alanyl-D-alanine carboxypeptidase) (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (PBP-6B). P04287[AEN]+(COG1686[M]) Penicillin-binding protein 5 precursor (D-alanyl-D-alanine carboxypeptidase fraction A) (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (PBP-5). P80449[U]*(COG1539[H]) D-erythro-7,8-dihydroneopterin triphosphate epimerase (EC 5.-.-.-) (Dihydroneopterin triphosphate 2'-epimerase). P52136[B]+(COG1393[P]) Putative arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier) (Fragment). P24178[B]+(COG1393[P]) Protein yffB. P76569[B]+(COG1393[P]) Protein yfgD. P37311[B]+(COG1393[P]) Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier). P37011[I]+(COG1114[E]) Branched-chain amino acid transport system II carrier protein (LIV-II). P39171[G]+(COG1104[E]) Cysteine desulfurase (EC 4.4.1.-) (ThiI transpersulfidase) (NifS protein homolog). P77310[U]+(COG0822[C]) NifU-like protein. P00960[F]+(COG0752[J]) Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) (Glycine--tRNA ligase alpha chain) (GlyRS). P00961[F]+(COG0751[J]) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) (Glycine--tRNA ligase beta chain) (GlyRS). P00804[EN]+(COG0597[N]) Lipoprotein signal peptidase (EC 3.4.23.36) (Prolipoprotein signal peptidase) (Signal peptidase II) (SPase II). P77218[L]*(COG0280[C]) Ethanolamine utilization protein eutD. P20625[AC]+(COG0177[L]) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase). P00951[F]+(COG0162[J]) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS). [cluster '6' has 24 of 40 proteins with EC-number annotated.] Cluster '86' (COG majority vote 'mixed', protein majority vote 'mix', 4 proteins in cluster) TRYPDEG-PWY ENZYME: TNAA_ECOLI P00913[GN] (COG3033[E]) Tryptophanase (EC 4.1.99.1) (L-tryptophan indole-lyase) (TNase). P25714[U]+(COG0706[N]) 60 kDa inner-membrane protein. P06277[U]+(COG0594[J]) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP protein) (RNase P protein) (Protein C5). P02437[F]+(COG0230[J]) 50S ribosomal protein L34. [cluster '86' has 2 of 4 proteins with EC-number annotated.] Cluster '317' (COG majority vote 'cell', protein majority vote 'go_metab_others', 2 proteins in cluster) CYANCAT-PWY ENZYME: CYNT_ECOLI P17582[L] (COG0288[P]) Carbonic anhydrase (EC 4.2.1.1). P36857[L]*(COG0288[P]) Protein yadF. [cluster '317' has 1 of 2 proteins with EC-number annotated.] Cluster '287' (COG majority vote 'metab', protein majority vote 'mix', 2 proteins in cluster) GLYSYN-PWY SERSYN-PWY ENZYME: SERB_ECOLI P06862[GLM] (COG0560[E]) Phosphoserine phosphatase (EC 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase). P30133[U]*(COG0560[E]) Hypothetical protein yfhB. [cluster '287' has 1 of 2 proteins with EC-number annotated.] Cluster '119' (COG majority vote 'metab', protein majority vote 'go_metab_others', 2 proteins in cluster) RIBOSYN2-PWY RIBOSYN2-PWY ENZYME: RIBD_ECOLI P25539[O] (COG0117[H] COG1985[H]) Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)]. ENZYME: RISB_ECOLI P25540[O] (COG0054[H]) 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (DMRL synthase) (Lumazine synthase) (Riboflavin synthase beta chain). [cluster '119' has 2 of 2 proteins with EC-number annotated.] Cluster '145' (COG majority vote 'mixed', protein majority vote 'mix', 5 proteins in cluster) BGALACT-PWY ENZYME: BGAL_ECOLI P00722[A] (NOG21008[S]) Beta-galactosidase (EC 3.2.1.23) (Lactase). P06864[A]*(NOG21008[S]) Evolved beta-galactosidase alpha-subunit (EC 3.2.1.23) (Lactase). P45541[U]+(COG1082[G]) Hypothetical protein yhfO. P45542[U]+(COG1082[G]) Hypothetical protein yhfP. P76044[C]+(COG1082[G]) Hypothetical protein ycjR. [cluster '145' has 2 of 5 proteins with EC-number annotated.] Cluster '0' (COG majority vote 'mixed', protein majority vote 'mix', 820 proteins in cluster) TCA ANARESP1-PWY GLYOXDEG-PWY GLYOXYLATE-BYPASS FERMENTATION-PWY GLUCONEO-PWY SAM-PWY SORBDEG-PWY MANNIDEG-PWY GLYCOLYSIS SERDEG-PWY PROSYN-PWY PROSYN-PWY ARO-PWY UBISYN-PWY UBISYN-PWY PWY0-41 PURSYN-PWY PYR-RIBONUCMET-PWY 4AMINOBUTMETAB-PWY GLUCONEO-PWY PEPTIDOGLYCANSYN-PWY ALANINE-VALINESYN-PWY ALADEG-PWY RIBOSYN2-PWY UBISYN-PWY PPGPPMET-PWY PHESYN TYRSYN PHESYN TYRSYN ANARESP1-PWY FERMENTATION-PWY GLYCOLYSIS DAPLYSINESYN-PWY HOMOSERSYN-PWY NUCMET2-PWY GLUTDEG-PWY ASPARTATESYN-PWY METHGLYUT-PWY THISYN-PWY GLUTSYN-PWY PROSYN-PWY DETOX1-PWY PEPTIDOGLYCANSYN-PWY AMMASSIM-PWY GLUTSYN-PWY AMMASSIM-PWY GLUTSYN-PWY DEOXYPYRNUCMET-PWY NONMEVIPP-PWY ANARESP1-PWY FERMENTATION-PWY GLYCOLYSIS HOMOSER-THRESYN-PWY 1CMET2-PWY GLYCLEAV-PWY GLYSYN-PWY FOLSYN-PWY PYRIMSYN-PWY PYRIMSYN-PWY PHOSLIPSYN-PWY THISYN-PWY PLPSAL-PWY DAPLYSINESYN-PWY DAPLYSINESYN-PWY HOMOSERSYN-PWY DAPLYSINESYN-PWY HOMOSERSYN-PWY PYRIMSYN-PWY PURSYN-PWY PEPTIDOGLYCANSYN-PWY NUCMET2-PWY DEOXYPYRNUCMET-PWY PYR-RIBONUCMET-PWY NUCMET2-PWY ECASYN-PWY PEPTIDOGLYCANSYN-PWY NUCMET2-PWY NUCMET2-PWY ARO-PWY ARO-PWY TCA ANARESP1-PWY ARGSYN-PWY PHOSLIPSYN-PWY GLYCOLYSIS POLYISOPRENSYN-PWY ASPASN-PWY SERDEG-PWY ILEUSYN-PWY THREOCAT-PWY 1CMET2-PWY FOLSYN-PWY SERDEG-PWY ILEUSYN-PWY THREOCAT-PWY ASPASN-PWY PEPTIDOGLYCANSYN-PWY UDPNAGSYN-PWY GLCMANNANAUT-PWY PURSYN-PWY RIBOSYN2-PWY HISTSYN-PWY AERESPDON-PWY ANARESPDON-PWY NAGLIPASYN-PWY HISTSYN-PWY HISTSYN-PWY HISTSYN-PWY AMMASSIM-PWY GLNSYN-PWY NRI-PWY PYRIMSYN-PWY PYR-RIBONUCMET-PWY GLUT-REDOX-PWY PANTOSYN-PWY ALKANEMONOX-PWY PURSYN-PWY PURSYN-PWY ARGSYN-PWY PYRIMSYN-PWY GLYCEROLMETAB-PWY NONMEVIPP-PWY HEMESYN2-PWY ANARESP1-PWY GLYCOLYSIS GLUCONEO-PWY ALANINE-VALINESYN-PWY HOMOSER-METSYN-PWY ARO-PWY 1CMET2-PWY SAM-PWY HOMOSER-METSYN-PWY ARGSYN-PWY POLYISOPRENSYN-PWY NUCMET2-PWY UBISYN-PWY MENAQUINONESYN-PWY NONMEVIPP-PWY PRPP-PWY PANTOSYN-PWY 1CMET2-PWY GLYCLEAV-PWY 1CMET2-PWY FOLSYN-PWY VALSYN-PWY ILEUSYN-PWY VALSYN-PWY ILEUSYN-PWY CYSTSYN-PWY PYR-RIBONUCMET-PWY HEMESYN2-PWY PEPTIDOGLYCANSYN-PWY PYRIDOXSYN-PWY SERSYN-PWY UDPNAGSYN-PWY GLCMANNANAUT-PWY NUCMET2-PWY PURSYN-PWY NONMEVIPP-PWY DAPLYSINESYN-PWY HOMOSER-THRESYN-PWY HOMOSER-METSYN-PWY THREOCAT-PWY NUCMET2-PWY PURSYN-PWY HOMOSER-METSYN-PWY DETOX1-PWY POLYAMSYN-PWY POLYAMSYN-PWY POLYISOPRENSYN-PWY PYRIMSYN-PWY ARO-PWY ARO-PWY ARGSYN-PWY ARGSYN-PWY ARGSYN-PWY FERMENTATION-PWY PYRUVOX-PWY ACETATEUTIL-PWY THREOCAT-PWY DRIBOPMET-PWY PHOSLIPSYN-PWY PHOSLIPSYN-PWY PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY ARGSYN-PWY PYRIMSYN-PWY FERMENTATION-PWY DRIBOPMET-PWY DEOXYPYRNUCMET-PWY NAGLIPASYN-PWY PYRIDOXSYN-PWY GLYCOLYSIS GLUCONEO-PWY TCA ANARESP1-PWY FERMENTATION-PWY GLYCOLYSIS GLUCONEO-PWY TCA ANARESP1-PWY GLYOXYLATE-BYPASS NONOXIPENT-PWY DARABCAT-PWY PEPTIDOGLYCANSYN-PWY ASPARAGINESYN-PWY RIBOSYN2-PWY LEUSYN-PWY PYR-RIBONUCMET-PWY RIBOSYN2-PWY GLYCOLYSIS GLUCONEO-PWY NUCMET2-PWY ARGDEG-PWY POLYAMSYN-PWY NUCMET2-PWY PURSYN-PWY DETOX1-PWY ALANINE-VALINESYN-PWY ALADEG-PWY PEPTIDOGLYCANSYN-PWY ARO-PWY PYR-RIBONUCMET-PWY GLYCEROLMETAB-PWY HEMESYN2-PWY HEMESYN2-PWY PANTOSYN-PWY THISYN-PWY NONMEVIPP-PWY PYRIDOXSYN-PWY GLUTATHIONESYN-PWY NUCMET2-PWY DEOXYPYRNUCMET-PWY PYRIDNUCSYN-PWY PYRNUCYC-PWY PPGPPMET-PWY ARGSYN-PWY ALKANEMONOX-PWY PYRIDOXSYN-PWY GLYCOLYSIS GLUCONEO-PWY PHOSLIPSYN-PWY PPGPPMET-PWY HEMESYN2-PWY NUCMET2-PWY PURSYN-PWY PEPTIDOGLYCANSYN-PWY GLUCOSE1PMETAB-PWY HEMESYN2-PWY HISTSYN-PWY HISTSYN-PWY GLYCOLYSIS GLUCONEO-PWY HISTSYN-PWY UDPNAGSYN-PWY GLCMANNANAUT-PWY 1CMET2-PWY GLYCLEAV-PWY DAPLYSINESYN-PWY HOMOSERSYN-PWY AST-PWY ARGSYN-PWY PEPTIDOGLYCANSYN-PWY GLYCEROLMETAB-PWY ENZYME: ARGD_ECOLI P18335[GLM] (NOG21038[S]) Acetylornithine/succinyldiaminopimelate aminotransferase (EC 2.6.1.11) (EC 2.6.1.17) (ACOAT) (Succinyldiaminopimelate transferase) (DapATase). ENZYME: ARGM_ECOLI P77581[GL] (NOG21038[S]) Succinylornithine transaminase (EC 2.6.1.-) (Succinylornithine aminotransferase) (Carbon starvation protein C). ENZYME: MRSA_ECOLI P31120[A] (NOG21037[S]) Protein mrsA. ENZYME: GSHR_ECOLI P06715[B] (NOG21036[S]) Glutathione reductase (EC 1.8.1.7) (GR) (GRase). ENZYME: PDXK_ECOLI P40191[U] (COG2240[H]) Pyridoxine kinase (EC 2.7.1.35) (Pyridoxal kinase) (Vitamin B6 kinase) (Pyridoxamine kinase) (PN/PL/PM kinase). ENZYME: UBIE_ECOLI P27851[O] (COG2226[H]) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-). ENZYME: ISPE_ECOLI P24209[HO] (COG1947[I]) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase). ENZYME: SERC_ECOLI P23721[GLMO] (COG1932[H] [E]) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT). ENZYME: META_ECOLI P07623[GM] (COG1897[E]) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine O- transsuccinylase) (HTS). ENZYME: PPCK_ECOLI P22259[AO] (COG1866[C]) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK). ENZYME: MGSA_ECOLI P37066[LO] (COG1803[G]) Methylglyoxal synthase (EC 4.2.3.3) (MGS). ENZYME: PYRI_ECOLI P00478[O] (COG1781[F]) Aspartate carbamoyltransferase regulatory chain. ENZYME: TDCG_ECOLI P42630[AO] (COG1760[E]) L-serine dehydratase tdcG (EC 4.3.1.17) (L-serine deaminase) (SDH). ENZYME: SDHL_ECOLI P16095[AO] (COG1760[E]) L-serine dehydratase 1 (EC 4.3.1.17) (L-serine deaminase 1) (SDH 1) (L-SD1). ENZYME: SDHM_ECOLI P30744[AO] (COG1760[E]) L-serine dehydratase 2 (EC 4.3.1.17) (L-serine deaminase 2) (SDH 2) (L-SD2). ENZYME: HEM4_ECOLI P09126[O] (COG1587[H]) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS) (Uroporphyrinogen- III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]). ENZYME: SPED_ECOLI P09159[LO] (COG1586[E]) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase beta chain; S- adenosylmethionine decarboxylase alpha chain]. ENZYME: DHG_ECOLI P15877[B] (COG1520[S]) Glucose dehydrogenase [pyrroloquinoline-quinone] (EC 1.1.99.17). ENZYME: AAT_ECOLI P00509[GO] (COG1448[E]) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A) (ASPAT). ENZYME: KITH_ECOLI P23331[C] (COG1435[F]) Thymidine kinase (EC 2.7.1.21). ENZYME: LLDD_ECOLI P33232[B] (COG1304[C]) L-lactate dehydrogenase (Cytochrome) (EC 1.1.2.3). ENZYME: PGPA_ECOLI P18200[H] (COG1267[I]) Phosphatidylglycerophosphatase A (EC 3.1.3.27). ENZYME: ISPD_ECOLI Q46893[HO] (COG1211[I]) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) (CDP-ME synthetase). ENZYME: GLMU_ECOLI P17114[AHO] (COG1207[M]) Bifunctional glmU protein [Includes: UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.57)]. ENZYME: DDLA_ECOLI P23844[A] (COG1181[M]) D-alanine--D-alanine ligase A (EC 6.3.2.4) (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A). ENZYME: DDLB_ECOLI P07862[A] (COG1181[M]) D-alanine--D-alanine ligase B (EC 6.3.2.4) (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B). ENZYME: SPEA_ECOLI P21170[GLNO] (COG1166[E]) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC). ENZYME: DXS_ECOLI P77488[HO] (COG1154[H] [I]) 1-deoxy-D-xylulose 5-phosphate synthase (EC 4.1.3.37) (1- deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS). ENZYME: ADH3_ECOLI P25437[U] (COG1062[C]) Alcohol dehydrogenase class III (EC 1.1.1.1) (Glutathione-dependent formaldehyde dehydrogenase) (EC 1.2.1.1) (FDH) (FALDH). ENZYME: NADD_ECOLI P52085[O] (COG1057[H]) Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) (Deamido- NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NAMN adenylyltransferase). ENZYME: ACO1_ECOLI P25516[L] (COG1048[C]) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1) (Aconitase 1). ENZYME: CYSE_ECOLI P05796[GM] (COG1045[E]) Serine acetyltransferase (EC 2.3.1.30) (SAT). ENZYME: PAND_ECOLI P31664[GO] (COG0853[H]) Aspartate 1-decarboxylase precursor (EC 4.1.1.11) (Aspartate alpha- decarboxylase). ENZYME: KDGL_ECOLI P00556[HO] (COG0818[M]) Diacylglycerol kinase (EC 2.7.1.107) (DAGK) (Diglyceride kinase) (DGK). ENZYME: MURB_ECOLI P08373[ABJ] (COG0812[M]) UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) (UDP-N- acetylmuramate dehydrogenase). ENZYME: GCH2_ECOLI P25523[O] (COG0807[H]) GTP cyclohydrolase II (EC 3.5.4.25). ENZYME: MURI_ECOLI P22634[AL] (COG0796[M]) Glutamate racemase (EC 5.1.1.3). ENZYME: ALR1_ECOLI P29743[AG] (COG0787[M]) Alanine racemase, biosynthetic (EC 5.1.1.1). ENZYME: ALR2_ECOLI P29012[G] (COG0787[M]) Alanine racemase, catabolic (EC 5.1.1.1). ENZYME: AMN_ECOLI P15272[U] (COG0775[F]) AMP nucleosidase (EC 3.2.2.4). ENZYME: LPXC_ECOLI P07652[AHO] (COG0774[M]) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc deacetylase) (envA protein). ENZYME: MURC_ECOLI P17952[AJKO] (COG0773[M]) UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) (UDP-N- acetylmuramoyl-L-alanine synthetase). ENZYME: MURD_ECOLI P14900[AJKO] (COG0771[M]) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) (UDP-N- acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme). ENZYME: MURF_ECOLI P11880[AJO] (COG0770[M]) UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D- alanyl ligase (EC 6.3.2.15) (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme). ENZYME: MURE_ECOLI P22188[AJKO] (COG0769[M]) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso- diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase). ENZYME: MURA_ECOLI P28909[AJO] (COG0766[M]) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT). ENZYME: LPXB_ECOLI P10441[AHO] (COG0763[M]) Lipid-A-disaccharide synthase (EC 2.4.1.182). ENZYME: DUT_ECOLI P06968[U] (COG0756[F]) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase). ENZYME: CATE_ECOLI P21179[KL] (COG0753[P]) Catalase HPII (EC 1.11.1.6) (Hydroxyperoxidase II). ENZYME: DXR_ECOLI P45568[HO] (COG0743[I]) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase). ENZYME: HEMG_ECOLI P27863[BO] (COG0716[C]) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO). ENZYME: AROD_ECOLI P05194[GM] (COG0710[E]) 3-dehydroquinate dehydratase (EC 4.2.1.10) (3-dehydroquinase) (Type I DHQase). ENZYME: MURG_ECOLI P17443[AHJO] (COG0707[M]) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase). ENZYME: AROK_ECOLI P24167[GM] (COG0703[E]) Shikimate kinase I (EC 2.7.1.71) (SKI). ENZYME: AROL_ECOLI P08329[GM] (COG0703[E]) Shikimate kinase II (EC 2.7.1.71) (SKII). ENZYME: GPMI_ECOLI P37689[AN] (COG0696[G]) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM). ENZYME: PGPB_ECOLI P18201[H] (COG0671[I]) Phosphatidylglycerophosphatase B (EC 3.1.3.27). ENZYME: COAD_ECOLI P23875[O] (COG0669[H]) Phosphopantetheine adenylyltransferase (EC 2.7.7.3) (Pantetheine- phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase). ENZYME: METH_ECOLI P13009[GMO] (COG0646[E] COG1410[E]) 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) (Methionine synthase, vitamin-B12 dependent isozyme) (MS). ENZYME: HPRT_ECOLI P36766[U] (COG0634[F]) Hypoxanthine phosphoribosyltransferase (EC 2.4.2.8) (HPRT). ENZYME: METC_ECOLI P06721[GM] (COG0626[E]) Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase). ENZYME: METB_ECOLI P00935[GM] (COG0626[E]) Cystathionine gamma-synthase (EC 4.2.99.9) (CGS) (O-succinylhomoserine (Thiol)-lyase). ENZYME: THIL_ECOLI P77785[O] (COG0611[H]) Thiamine-monophosphate kinase (EC 2.7.4.16) (Thiamine-phosphate kinase). ENZYME: SODF_ECOLI P09157[L] (COG0605[P]) Superoxide dismutase [Fe] (EC 1.15.1.1). ENZYME: SODM_ECOLI P00448[L] (COG0605[P]) Superoxide dismutase [Mn] (EC 1.15.1.1) (MnSOD). ENZYME: UGPQ_ECOLI P10908[AHLN] (COG0584[C]) Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase). ENZYME: GLPQ_ECOLI P09394[AHLN] (COG0584[C]) Glycerophosphoryl diester phosphodiesterase, periplasmic precursor (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase). ENZYME: CDSA_ECOLI P06466[HO] (COG0575[I]) Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase). ENZYME: URK_ECOLI P31218[O] (COG0572[F]) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase) (Cytidine monophosphokinase). ENZYME: KAD_ECOLI P05082[U] (COG0563[F]) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase). ENZYME: PGSA_ECOLI P06978[HO] (COG0558[I]) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase) (PGP synthase). ENZYME: ARGA_ECOLI P08205[GLM] (COG0548[E] COG1246[E]) Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS) (NAGS). ENZYME: ARGB_ECOLI P11445[GLM] (COG0548[E]) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK) (N-acetyl-L- glutamate 5-phosphotransferase). ENZYME: FRE_ECOLI P23486[B] (COG0543[H] [C]) NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) (FMN reductase) (Aquacobalamin reductase) (NAD(P)H:flavin oxidoreductase) (Ferrisiderophore reductase C). ENZYME: PYRB_ECOLI P00479[GO] (COG0540[F]) Aspartate carbamoyltransferase catalytic chain (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase). ENZYME: IDH_ECOLI P08200[L] (COG0538[C]) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP). ENZYME: PYRH_ECOLI P29464[M] (COG0528[F]) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase). ENZYME: AK3_ECOLI P08660[GLM] (COG0527[E]) Lysine-sensitive aspartokinase III (EC 2.7.2.4) (Aspartate kinase III). ENZYME: IMDH_ECOLI P06981[U] (COG0516[F] COG0517[R]) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD). ENZYME: GUAC_ECOLI P15344[U] (COG0516[F]) GMP reductase (EC 1.7.1.7) (Guanosine 5'-monophosphate oxidoreductase) (Guanosine monophosphate reductase). ENZYME: CARA_ECOLI P00907[GLM] (COG0505[F] [E]) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) (Carbamoyl- phosphate synthetase glutamine chain). ENZYME: PYRG_ECOLI P08398[G] (COG0504[F]) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP synthetase). ENZYME: APT_ECOLI P07672[U] (COG0503[F]) Adenine phosphoribosyltransferase (EC 2.4.2.7) (APRT). ENZYME: XGPT_ECOLI P00501[U] (COG0503[F]) Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) (XGPRT). ENZYME: THRC_ECOLI P00934[GM] (COG0498[E]) Threonine synthase (EC 4.2.3.1). ENZYME: GLTD_ECOLI P09832[BGM] (COG0493[R] [E]) Glutamate synthase [NADPH] small chain (EC 1.4.1.13) (Glutamate synthase beta subunit) (NADPH-GOGAT) (GLTS beta chain). ENZYME: MRAY_ECOLI P15876[AHJ] (COG0472[M]) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP- MurNAc-pentapeptide phosphotransferase). ENZYME: WECA_ECOLI P24235[AHO] (COG0472[M]) Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (EC 2.4.1.-) (UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase). ENZYME: KPY1_ECOLI P14178[AN] (COG0469[G]) Pyruvate kinase I (EC 2.7.1.40) (PK-1). ENZYME: KPY2_ECOLI P21599[AN] (COG0469[G]) Pyruvate kinase II (EC 2.7.1.40) (PK-2). ENZYME: KPRS_ECOLI P08330[O] (COG0462[F] [E]) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK) (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase). ENZYME: PYRE_ECOLI P00495[U] (COG0461[F]) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT) (OPRTase). ENZYME: AK1H_ECOLI P00561[GLM] (COG0460[E] COG0527[E]) Bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4); Homoserine dehydrogenase I (EC 1.1.1.3)]. ENZYME: AK2H_ECOLI P00562[GM] (COG0460[E] COG0527[E]) Bifunctional aspartokinase/homoserine dehydrogenase II (AKII-HDII) [Includes: Aspartokinase II (EC 2.7.2.4); Homoserine dehydrogenase II (EC 1.1.1.3)]. ENZYME: CARB_ECOLI P00968[GLMO] (COG0458[F] [E]) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (Carbamoyl- phosphate synthetase ammonia chain). ENZYME: DFP_ECOLI P24285[U] (COG0452[H]) DNA/pantothenate metabolism flavoprotein. ENZYME: GLMS_ECOLI P17169[AGLO] (COG0449[M]) Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6- phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-phosphate synthase). ENZYME: AVTA_ECOLI P09053[GO] (COG0436[E]) Valine--pyruvate aminotransferase (EC 2.6.1.66) (Transaminase C) (Alanine--valine transaminase). ENZYME: SSUE_ECOLI P80644[U] (COG0431[R]) FMN reductase (EC 1.5.1.29) (Sulfate starvation-induced protein 4) (SSI4). ENZYME: SPEE_ECOLI P09158[LO] (COG0421[E]) Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (SPDSY). ENZYME: DCUP_ECOLI P29680[O] (COG0407[H]) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD). ENZYME: GCST_ECOLI P27248[GN] (COG0404[E]) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage system T protein). ENZYME: GCSP_ECOLI P33195[G] (COG0403[E] COG1003[E]) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein). ENZYME: UBIA_ECOLI P26601[O] (COG0382[H]) 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (4-HB polyprenyltransferase). ENZYME: ASNB_ECOLI P22106[GLM] (COG0367[E]) Asparagine synthetase B [glutamine-hydrolyzing] (EC 6.3.5.4). ENZYME: PROC_ECOLI P00373[GM] (COG0345[E]) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C reductase). ENZYME: AROB_ECOLI P07639[GM] (COG0337[E]) 3-dehydroquinate synthase (EC 4.2.3.4). ENZYME: DHE4_ECOLI P00370[G] (COG0334[E]) NADP-specific glutamate dehydrogenase (EC 1.4.1.4) (NADP-GDH). ENZYME: DAPA_ECOLI P05640[GM] (COG0329[M] [E]) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS). ENZYME: RELA_ECOLI P11585[LN] (COG0317[K] [T]) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((p)ppGpp synthetase). ENZYME: SPOT_ECOLI P17580[N] (COG0317[K] [T]) Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) ((ppGpp)ase) (Penta-phosphate guanosine-3'-pyrophosphohydrolase). ENZYME: RISA_ECOLI P29015[O] (COG0307[H]) Riboflavin synthase alpha chain (EC 2.5.1.9). ENZYME: PUR3_ECOLI P08179[O] (COG0299[F]) Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase). ENZYME: TYRA_ECOLI P07023[GLMO] (COG0287[E] COG1605[E]) T-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM); Prephenate dehydrogenase (EC 1.3.1.12) (PDH)]. ENZYME: FOLC_ECOLI P08192[LO] (COG0285[H]) FolC bifunctional protein [Includes: Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS); Dihydrofolate synthase (EC 6.3.2.12)]. ENZYME: PYRF_ECOLI P08244[O] (COG0284[F]) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase). ENZYME: KCY_ECOLI P23863[U] (COG0283[F]) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine monophosphate kinase) (CMP kinase) (MssA protein) (P25). ENZYME: PTA_ECOLI P39184[L] (COG0280[C] COG0857[R]) Phosphate acetyltransferase (EC 2.3.1.8) (Phosphotransacetylase). ENZYME: HEMZ_ECOLI P23871[O] (COG0276[H]) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme synthetase). ENZYME: DEOC_ECOLI P00882[U] (COG0274[F]) Deoxyribose-phosphate aldolase (EC 4.1.2.4) (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA). ENZYME: PROB_ECOLI P07005[GM] (COG0263[E]) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK). ENZYME: ASG2_ECOLI P00805[G] (COG0252[J] [E]) L-asparaginase II precursor (EC 3.5.1.1) (L-asparagine amidohydrolase II) (L-ASNase II) (Colaspase). ENZYME: ASG1_ECOLI P18840[G] (COG0252[J] [E]) L-asparaginase I (EC 3.5.1.1) (L-asparagine amidohydrolase I) (L-ASNase I). ENZYME: GPPA_ECOLI P25552[U] (COG0248[F] [P]) Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (EC 3.6.1.40) (Guanosine pentaphosphate phosphohydrolase) (pppGpp- 5'-phosphohydrolase). ENZYME: ISPF_ECOLI P36663[HO] (COG0245[I]) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) (MECPS) (MECDP-synthase). ENZYME: GPDA_ECOLI P37606[AHLN] (COG0240[C]) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) (NAD(P)H- dependent glycerol-3-phosphate dehydrogenase). ENZYME: TYPH_ECOLI P07650[L] (COG0213[F]) Thymidine phosphorylase (EC 2.4.2.4) (TDRPASE). ENZYME: K6P1_ECOLI P06998[AN] (COG0205[G]) 6-phosphofructokinase isozyme I (EC 2.7.1.11) (Phosphofructokinase-1) (Phosphohexokinase-1). ENZYME: RIBF_ECOLI P08391[O] (COG0196[H]) Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase (EC 2.7.1.26) (Flavokinase); FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)]. ENZYME: KGUA_ECOLI P24234[U] (COG0194[F]) Guanylate kinase (EC 2.7.4.8) (GMP kinase). ENZYME: METK_ECOLI P04384[L] (COG0192[H]) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synthetase) (MAT). ENZYME: FOLD_ECOLI P24186[GLMO] (COG0190[H]) FolD bifunctional protein [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)]. ENZYME: GSHB_ECOLI P04425[O] (COG0189[H] [J]) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase) (GSH synthetase) (GSH-S) (GSHase). ENZYME: HEM3_ECOLI P06983[O] (COG0181[H]) Porphobilinogen deaminase (EC 4.3.1.8) (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase). ENZYME: GLNA_ECOLI P06711[L] (COG0174[E]) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia ligase). ENZYME: AROE_ECOLI P15770[GLMO] (COG0169[E]) Shikimate 5-dehydrogenase (EC 1.1.1.25). ENZYME: PYRD_ECOLI P05021[O] (COG0167[F]) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD). ENZYME: G6PI_ECOLI P11537[ANO] (COG0166[G]) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI). ENZYME: ARLY_ECOLI P11447[GLM] (COG0165[E]) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase) (ASAL). ENZYME: UBIX_ECOLI P09550[U] (COG0163[H]) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) (Polyprenyl p-hydroxybenzoate decarboxylase). ENZYME: GABT_ECOLI P22256[GL] (COG0160[E]) 4-aminobutyrate aminotransferase (EC 2.6.1.19) (Gamma-amino-N-butyrate transaminase) (GABA transaminase) (Glutamate:succinic semialdehyde transaminase) (GABA aminotransferase) (GABA-AT). ENZYME: PUR2_ECOLI P15640[O] (COG0151[F]) Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase). ENZYME: PUR5_ECOLI P08178[U] (COG0150[F]) Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase). ENZYME: TPIS_ECOLI P04790[AHLNO] (COG0149[G]) Triosephosphate isomerase (EC 5.3.1.1) (TIM). ENZYME: ENO_ECOLI P08324[AN] (COG0148[G]) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase). ENZYME: ISPA_ECOLI P22939[HO] (COG0142[H]) Geranyltranstransferase (EC 2.5.1.10) (Farnesyl-diphosphate synthase) (FPP synthase). ENZYME: ISPB_ECOLI P19641[HO] (COG0142[H]) Octaprenyl-diphosphate synthase (EC 2.5.1.-) (Octaprenyl pyrophosphate synthetase) (OPP synthetase). ENZYME: HISX_ECOLI P06988[GM] (COG0141[E]) Histidinol dehydrogenase (EC 1.1.1.23) (HDH). ENZYME: HIS2_ECOLI P06989[GM] (COG0139[E] COG0140[E]) Histidine biosynthesis bifunctional protein hisIE [Includes: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)]. ENZYME: PUR9_ECOLI P15639[L] (COG0138[F]) Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)]. ENZYME: ASSY_ECOLI P22767[GLM] (COG0137[E]) Argininosuccinate synthase (EC 6.3.4.5) (Citrulline--aspartate ligase). ENZYME: DHAS_ECOLI P00353[GM] (COG0136[E]) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA dehydrogenase) (ASADH). ENZYME: HIS7_ECOLI P06987[GM] (COG0131[E] COG0241[E]) Histidine biosynthesis bifunctional protein hisB [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)]. ENZYME: ILVD_ECOLI P05791[GLM] (COG0129[G] [E]) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD). ENZYME: AROA_ECOLI P07638[GM] (COG0128[E]) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (5- enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS). ENZYME: PGK_ECOLI P11665[AN] (COG0126[G]) Phosphoglycerate kinase (EC 2.7.2.3). ENZYME: HIS5_ECOLI P10375[GM] (COG0118[E]) Imidazole glycerol phosphate synthase subunit hisH (EC 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH). ENZYME: FUMC_ECOLI P05042[U] (COG0114[C]) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase). ENZYME: HEM2_ECOLI P15002[O] (COG0113[H]) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24) (Porphobilinogen synthase) (ALAD) (ALADH). ENZYME: GLYA_ECOLI P00477[GL] (COG0112[E]) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine methylase) (SHMT). ENZYME: RIBB_ECOLI P24199[O] (COG0108[H]) 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase). ENZYME: HIS6_ECOLI P10373[GM] (COG0107[E]) Imidazole glycerol phosphate synthase subunit hisF (EC 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF). ENZYME: HIS4_ECOLI P10371[GM] (COG0106[E]) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase). ENZYME: NDK_ECOLI P24233[U] (COG0105[F]) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP kinase) (Nucleoside-2-P kinase). ENZYME: PURA_ECOLI P12283[U] (COG0104[F]) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate ligase) (AdSS) (AMPSase). ENZYME: KHSE_ECOLI P00547[GLM] (COG0083[E]) Homoserine kinase (EC 2.7.1.39) (HK). ENZYME: AROC_ECOLI P12008[GM] (COG0082[E]) Chorismate synthase (EC 4.2.3.5) (5-enolpyruvylshikimate-3-phosphate phospholyase). ENZYME: PHEA_ECOLI P07022[GM] (COG0077[E] COG1605[E]) P-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM); Prephenate dehydratase (EC 4.2.1.51) (PDT)]. ENZYME: GLTB_ECOLI P09831[GM] (COG0067[E] COG0069[E] COG0070[E]) Glutamate synthase [NADPH] large chain precursor (EC 1.4.1.13) (Glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain). ENZYME: LEU2_ECOLI P30127[GM] (COG0065[E]) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI). ENZYME: ILVC_ECOLI P05793[GM] (COG0059[H] [E]) Ketol-acid reductoisomerase (EC 1.1.1.86) (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase). ENZYME: G3P1_ECOLI P06977[AN] (COG0057[G]) Glyceraldehyde 3-phosphate dehydrogenase A (EC 1.2.1.12) (GAPDH-A). ENZYME: E4PD_ECOLI P11603[AN] (COG0057[G]) D-erythrose 4-phosphate dehydrogenase (EC 1.2.1.-) (E4PDH). ENZYME: ALN_ECOLI P77671[U] (COG0044[F]) Allantoinase (EC 3.5.2.5). ENZYME: UBID_ECOLI P26615[O] (COG0043[H]) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) (Polyprenyl p-hydroxybenzoate decarboxylase). ENZYME: PUR6_ECOLI P09028[U] (COG0041[F]) Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC). ENZYME: HIS1_ECOLI P10366[GM] (COG0040[E]) ATP phosphoribosyltransferase (EC 2.4.2.17). ENZYME: MDH_ECOLI P06994[U] (COG0039[C]) Malate dehydrogenase (EC 1.1.1.37). ENZYME: RPE_ECOLI P32661[A] (COG0036[G]) Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3- epimerase) (PPE) (R5P3E). ENZYME: PUR1_ECOLI P00496[GLO] (COG0034[F]) Amidophosphoribosyltransferase (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase). ENZYME: UPPS_ECOLI Q47675[AJL] (COG0020[I]) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP synthetase) (Di-trans-poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS). ENZYME: DCDA_ECOLI P00861[GM] (COG0019[E]) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP decarboxylase). ENZYME: PUR8_ECOLI P25739[U] (COG0015[F]) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase) (ASL). ENZYME: PROA_ECOLI P07004[GLM] (COG0014[E]) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5- semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase). ENZYME: XAPA_ECOLI P45563[U] (COG0005[F]) Xanthosine phosphorylase (EC 2.4.2.-). ENZYME: ARGC_ECOLI P11446[GLM] (COG0002[E]) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) (AGPR) (N- acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase). P08366[U]+(NOG13169[S]) Hypothetical protein yaiA. P76559[U]+(NOG08629[S]) Hypothetical protein ypfG precursor. P26605[U]+(NOG07956[S]) Protein hdeB precursor (10K-L protein). P08403[GM]+(NOG07570[S]) AroM protein. P09161[U]+(NOG06531[S]) Hypothetical protein ybaA. P27840[U]+(COG3698[S]) Hypothetical protein yigE. P43342[AC]+(COG3663[L]) G/U mismatch-specific DNA glycosylase (EC 3.2.2.-) (Mismatch-specific uracil DNA-glycosylase) (UDG). P35340[BL]+(COG3634[O]) Alkyl hydroperoxide reductase subunit F (EC 1.6.4.-) (Alkyl hydroperoxide reductase F52A protein). P43533[U]+(COG3418[N]) Flagella synthesis protein flgN. Q47688[CJ]+(COG3344[L]) Hypothetical protein ykfC. P27243[AHO]+(COG3307[M]) O-antigen ligase. P77510[U]+(COG3290[T]) Sensor kinase dpiB (EC 2.7.3.-) (Sensor kinase citA). P39272[U]+(COG3290[T]) Sensor protein dcuS (EC 2.7.3.-). P33356[D]+(COG3279[K] [T]) Hypothetical protein yehT. P77742[D]+(COG3279[K] [T]) Hypothetical protein ypdB. P76111[U]+(COG3238[S]) Hypothetical protein ydcZ. P32691[U]+(COG3237[S]) Protein yjbJ. P31215[I]+(COG3201[H]) Protein pnuC. P75747[U]+(COG3180[R]) AbrB protein (AidB regulator). P30016[I]+(COG3158[P]) Kup system potassium uptake protein. P45473[U]+(COG3153[R]) Hypothetical acetyltransferase yhbS (EC 2.3.1.-). P39368[U]+(COG3153[R]) Hypothetical acetyltransferase yjhQ (EC 2.3.1.-). P52614[K]+(COG3144[N]) Flagellar hook-length control protein. P11288[U]+(COG3022[S]) Protein yaaA. P45533[U]+(COG2964[S]) Hypothetical protein yheO. P18197[J]+(COG2894[D]) Septum site-determining protein minD (Cell division inhibitor minD). P39199[E]+(COG2890[J]) Hypothetical adenine-specific methylase yfcB (EC 2.1.1.72). P37186[E]+(COG2890[J]) Protein methyltransferase hemK (EC 2.1.1.-) (Protein-glutamine N- methyltransferase hemK) (Protein-(glutamine-N5) MTase hemK) (M.EcoKHemKP). P10115[IJ]+(COG2884[D]) Cell division ATP-binding protein ftsE. P52613[K]+(COG2882[N]) Flagellar fliJ protein. P76658[AHO]+(COG2870[M]) ADP-heptose synthase (EC 2.7.-.-). P51983[EN]+(COG2866[E]) Hypothetical protein ycjI. P52082[U]+(COG2862[S]) Hypothetical protein yqhA. P37691[U]+(COG2861[S]) Hypothetical protein yibQ precursor. P27249[L]+(COG2844[O]) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII uridylyl- transferase) (Uridylyl removing enzyme) (UTase). P31545[U]+(COG2837[P]) Hypothetical protein ycdB precursor. P76536[U]+(COG2837[P]) Hypothetical protein yfeX. P37246[C]+(COG2826[L]) Transposase insI for insertion sequence element IS30B/C/D. P11457[U]+(COG2825[M]) Histone-like protein HLP-1 precursor (DNA-binding 17 kDa protein). P42596[K]+(COG2813[J]) Putative ribosomal RNA small subunit methyltransferase D (EC 2.1.1.52) (rRNA (guanine-N(2)-)-methyltransferase) (16S rRNA m2G966 methyltransferase). P39406[CK]+(COG2813[J]) Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) (rRNA (guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207 methyltransferase). P06710[CJ]+(COG2812[L]) DNA polymerase III subunit tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit gamma]. P52052[I]+(COG2805[N]) Hypothetical protein yggR. P45759[I]+(COG2804[N]) Probable general secretion pathway protein E (Type II traffic warden ATPase). P36645[I]+(COG2804[N]) Protein transport protein hofB. P43532[D]+(COG2747[N] [K]) Negative regulator of flagellin synthesis (Anti-sigma-28 factor). P23483[DL]+(COG2716[E]) Glycine cleavage system transcriptional repressor (Gcv operon repressor). P37047[D]+(COG2508[Q] [T]) Carbohydrate diacid regulator (Sugar diacid regulator). P33645[U]+(COG2337[T]) PemK-like protein 1 (MazF protein). P33647[U]+(COG2337[T]) PemK-like protein 2. P18534[U]+(COG2336[T]) PemI-like protein 1 (MazE protein). P08365[U]+(COG2336[T]) PemI-like protein 2. P37443[U]+(COG2333[R]) Hypothetical protein ycaI. P75839[U]+(COG2323[S]) Hypothetical protein ycaP. P33025[U]+(COG2313[Q]) Hypothetical protein yeiN. P25747[I]+(COG2311[R]) Hypothetical protein yeiB. P08194[AHILN]+(COG2271[G]) Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease). P13408[I]+(COG2271[G]) Hexose phosphate transport protein. P09836[I]+(COG2271[G]) Regulatory protein uhpC. P03812[F]+(COG2269[J]) Putative lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) (GX). P07000[HO]+(COG2267[I]) Lysophospholipase L2 (EC 3.1.1.5) (Lecithinase B). P28637[E]+(COG2264[J]) Ribosomal protein L11 methyltransferase (EC 2.1.1.-). P45526[CJ]+(COG2256[L]) Hypothetical protein ycaJ. P08577[CEKN]+(COG2255[L]) Holliday junction DNA helicase ruvB. P31440[I]+(COG2252[R]) Hypothetical protein yicO. Q46818[I]+(COG2252[R]) Hypothetical protein ygfR. P31466[I]+(COG2252[R]) Hypothetical protein yieG. Q46817[I]+(COG2252[R]) Hypothetical protein ygfQ. P32702[I]+(COG2252[R]) Hypothetical protein yjcD. P76482[U]+(COG2234[R]) Hypothetical protein yfbL. P10423[U]+(COG2234[R]) Alkaline phosphatase isozyme conversion protein precursor (EC 3.4.11.-). P30010[HO]+(COG2230[M]) Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase). P39300[U]+(COG2220[R]) Hypothetical protein yjfR. P76425[U]+(COG2215[S]) Hypothetical protein yohM. P06713[DL]+(COG2204[T]) Nitrogen regulation protein NR(I). P21712[D]+(COG2204[T]) Hypothetical protein yfhA (ORF-2). Q06065[D]+(COG2204[T]) Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme). P14375[D]+(COG2204[T]) Transcriptional regulatory protein zraR. P07330[DK]+(COG2201[N] [T]) Protein-glutamate methylesterase (EC 3.1.1.61). P11056[K]+(COG2193[P]) Bacterioferritin (BFR) (Cytochrome B-1) (Cytochrome B-557). P10122[J]+(COG2177[D]) Cell division protein ftsX. P33596[CK]+(COG2137[R]) Regulatory protein recX (oraA protein). P31123[U]+(COG2095[S]) Multiple antibiotic resistance protein marC. P46851[U]+(COG2095[S]) Hypothetical protein yhgN. P25743[U]+(COG2095[S]) Hypothetical protein yhcE. P37623[U]+(COG2091[Q]) 4'-phosphopantetheinyl transferase acpT (EC 2.7.8.-). P75940[K]+(COG2063[N]) Flagellar L-ring protein precursor (Basal body L-ring protein). P24228[AEJN]+(COG2027[M]) Penicillin-binding protein 4 precursor (PBP-4) [Includes: D-alanyl-D- alanine carboxypeptidase (EC 3.4.16.4) (DD-peptidase) (DD- carboxypeptidase); D-alanyl-D-alanine-endopeptidase (EC 3.4.99.-) (DD- endopeptidase)]. P31547[I]+(COG2011[R]) D-methionine transport system permease protein metI. P22186[U]+(COG2001[S]) Protein mraZ. Q46836[EN]+(COG1989[N]) Leader peptidase pppA. P25960[EIN]+(COG1989[N]) Type 4 prepilin-like proteins leader peptide processing enzyme [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin peptidase); N- methyltransferase (EC 2.1.1.-)]. P45570[U]+(COG1988[R]) Hypothetical protein ybcI. P76209[U]+(COG1988[R]) Hypothetical protein ydjM precursor. P33134[E]+(COG1987[N]) Flagellar biosynthetic protein fliQ. P39411[U]+(COG1986[S]) Hypothetical protein yjjX. P75974[DEN]+(COG1974[K] [T]) Putative lambdoid prophage e14 repressor protein C2. P04153[CEN]+(COG1974[K] [T]) UmuD protein (EC 3.4.21.-) [Contains: UmuD' protein]. P03033[CDEJKN]+(COG1974[K] [T]) LexA repressor (EC 3.4.21.88). P76264[U]+(COG1971[S]) Hypothetical protein yebN. P31054[U]+(COG1968[S]) Putative undecaprenol kinase (EC 2.7.1.66) (Bacitracin resistance protein). P77484[U]+(COG1959[K]) Hypothetical protein yfhP. P21498[U]+(COG1959[K]) Hypothetical protein yjeB. P76270[U]+(COG1956[T]) Protein yebR. P77145[I]+(COG1914[P]) Manganese transport protein mntH. P76491[U]+(COG1896[R]) Hypothetical protein yfbR. P15070[K]+(COG1886[N]) Flagellar motor switch protein fliN. P52060[U]+(COG1872[S]) Hypothetical protein yggU. P06974[K]+(COG1868[N]) Flagellar motor switch protein fliM. P19677[U]+(COG1862[N]) Hypothetical protein yajC. P75936[U]+(COG1843[N]) Basal-body rod modification protein flgD. P02430[F]+(COG1841[J]) 50S ribosomal protein L30. P02426[F]+(COG1825[J]) 50S ribosomal protein L25. P75934[K]+(COG1815[N]) Flagellar basal-body rod protein flgB (Putative proximal rod protein). P76473[E]+(COG1807[M]) Hypothetical protein yfbI. P03822[U]+(COG1806[S]) Hypothetical protein ydiA. P16926[U]+(COG1792[M]) Rod shape-determining protein mreC. P00634[L]+(COG1785[P]) Alkaline phosphatase precursor (EC 3.1.3.1) (APASE). P25798[K]+(COG1766[N]) Flagellar M-ring protein. P24246[K]+(COG1765[O]) Hypothetical protein yhfA. P08374[U]+(COG1758[K]) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (Transcriptase omega chain) (RNA polymerase omega subunit). P37053[U]+(COG1752[R]) Hypothetical protein ychK. P39407[U]+(COG1752[R]) Hypothetical protein yjjU. P75939[K]+(COG1749[N]) Flagellar basal-body rod protein flgG (Distal rod protein). P75938[K]+(COG1749[N]) Flagellar basal-body rod protein flgF (Putative proximal rod protein). P75937[K]+(COG1749[N]) Flagellar hook protein flgE. P27862[U]+(COG1739[S]) Hypothetical protein yigZ. P22938[C]+(COG1722[L]) Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) (Exonuclease VII small subunit). P75941[K]+(COG1706[N]) Flagellar P-ring protein precursor (Basal body P-ring protein). P75942[AKN]+(COG1705[N]) Peptidoglycan hydrolase flgJ (EC 3.2.1.-) (Muramidase flgJ). P31544[K]+(COG1702[T]) PhoH protein (Phosphate starvation-inducible protein psiH). P77349[K]+(COG1702[T]) PhoH-like protein. Q46872[U]+(COG1695[K]) Hypothetical protein yqjI. P33646[U]+(COG1694[R]) MazG protein. P33135[EI]+(COG1684[N]) Flagellar biosynthetic protein fliR. P25797[K]+(COG1677[N]) Flagellar hook-basal body complex protein fliE. P46889[J]+(COG1674[D]) Cell division protein ftsK. P52088[U]+(COG1671[S]) Hypothetical protein yaiI. P77482[U]+(COG1666[S]) Protein yajQ. Q9JMT6[U]+(COG1664[S]) YbcA protein. P33995[U]+(COG1660[R]) Hypothetical protein yhbJ. P37350[U]+(COG1611[R]) Hypothetical protein ygdH. P04379[U]+(COG1607[I]) Putative acyl-CoA thioester hydrolase yciA (EC 3.1.2.-) (P14 protein). P76107[U]+(COG1598[S]) Hypothetical protein ydcQ. P06136[J]+(COG1589[M]) Cell division protein ftsQ. P06973[K]+(COG1580[N]) Flagellar fliL protein. P05850[U]+(COG1576[S]) Hypothetical protein ybeA. P04994[C]+(COG1570[L]) Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) (Exonuclease VII large subunit). P23839[U]+(COG1561[S]) Protein yicC. P28306[U]+(COG1559[R]) Hypothetical protein yceG. P75935[K]+(COG1558[N]) Flagellar basal-body rod protein flgC (Putative proximal rod protein). P77415[U]+(COG1555[L]) Hypothetical protein ybaV precursor. P31803[L]+(COG1551[T]) Carbon storage regulator. P31131[U]+(COG1546[R]) Hypothetical protein ydeJ. P41053[U]+(COG1546[R]) Protein ygaD. P11285[U]+(COG1544[J]) Protein yfiA. P31221[U]+(COG1544[J]) Probable sigma(54) modulation protein (ORF3) (ORF95). P31067[K]+(COG1536[N]) Flagellar motor switch protein fliG. P42550[U]+(COG1534[J]) Hypothetical protein yhbY. P21513[U]+(COG1530[J]) Ribonuclease E (EC 3.1.4.-) (RNase E). P25537[J]+(COG1530[J]) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial filament protein). P77774[B]*(COG1520[S]) Hypothetical protein yfgL. P26608[K]+(COG1516[N]) Flagellar protein fliS. P32679[C]+(COG1515[L]) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease). P55140[U]+(COG1512[R]) Hypothetical protein ygcG. P39280[U]+(COG1509[E]) Hypothetical protein yjeK. P24255[DGL]+(COG1508[K]) RNA polymerase sigma-54 factor. P33644[U]+(COG1496[S]) Hypothetical protein yfiH. P32147[GN]+(COG1490[J]) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-). P18273[U]+(COG1489[G]) Sugar fermentation stimulation protein A. P28630[CJ]+(COG1466[L]) DNA polymerase III, delta subunit (EC 2.7.7.7). P04846[U]+(COG1464[R]) Lipoprotein-28 precursor. P28635[I]+(COG1464[R]) D-methionine-binding lipoprotein metQ precursor. P41441[EI]+(COG1459[N]) Putative general secretion pathway protein F (Protein transport protein hofF). P36646[EI]+(COG1459[N]) Protein transport protein hofC. P34749[EI]+(COG1450[N]) Protein transport protein hofQ precursor. P45758[EI]+(COG1450[N]) Probable general secretion pathway protein D precursor. P15282[CD]+(COG1438[E]) Arginine repressor. P27434[U]+(COG1426[S]) Hypothetical protein yfgA. P46144[U]+(COG1418[R]) Hypothetical protein yedJ. P24172[U]+(COG1413[C]) Hypothetical protein yibA. P37049[U]+(COG1408[R]) Hypothetical protein yaeI. P14189[U]+(COG1399[R]) Hypothetical protein yceD (G30K). P15027[C]+(COG1381[L]) DNA repair protein recO (Recombination protein O). P76299[E]+(COG1377[N]) Flagellar biosynthetic protein flhB. P09349[K]+(COG1360[N]) Chemotaxis motB protein (Motility protein B). Q47154[U]+(COG1360[N]) MbhA protein. P07364[K]+(COG1352[N] [T]) Chemotaxis protein methyltransferase (EC 2.1.1.80). P24216[K]+(COG1345[N]) Flagellar hook-associated protein 2 (HAP2) (Filament cap protein) (Flagellar cap protein). P04949[K]+(COG1344[N]) Flagellin. P29744[K]+(COG1344[N]) Flagellar hook-associated protein 3 (HAP3) (Hook-filament junction protein). P33133[EI]+(COG1338[N]) Flagellar biosynthetic protein fliP precursor. P28903[L]+(COG1328[F]) Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2). P25538[U]+(COG1327[K]) Hypothetical protein ybaD. P36654[U]+(COG1324[P]) Periplasmic divalent cation tolerance protein cutA (C-type cytochrome biogenesis protein cycY). P31068[K]+(COG1317[N]) Flagellar assembly protein fliH. Q47153[EI]+(COG1298[N]) FhiA protein. P76298[EI]+(COG1298[N]) Flagellar biosynthesis protein flhA. P76630[I]+(COG1296[E]) Hypothetical protein ygaZ. P32146[U]+(COG1295[R]) Ribonuclease BN (EC 3.1.-.-) (RNase BN). P37642[U]+(COG1295[R]) Hypothetical protein yhjD. P09348[K]+(COG1291[N]) Chemotaxis motA protein (Motility protein A). P32683[U]+(COG1283[P]) Hypothetical protein yjbB. P45803[U]+(COG1281[O]) 33 kDa chaperonin (Heat shock protein 33) (HSP33). Q46827[U]+(COG1272[R]) Hypothetical protein yqfA. P75933[K]+(COG1261[N]) Flagella basal body P-ring formation protein flgA precursor. P33235[K]+(COG1256[N]) Flagellar hook-associated protein 1 (HAP1). P75877[U]+(COG1254[C]) Putative acylphosphatase (EC 3.6.1.7) (Acylphosphate phosphohydrolase). P37908[U]+(COG1253[N]) Hypothetical protein yfjD. P39319[U]+(COG1253[N]) Hypothetical protein ytfL. P76389[U]+(COG1253[N]) Hypothetical protein yegH. P77392[I]+(COG1253[N]) Magnesium and cobalt efflux protein corC. P32168[U]+(COG1220[O]) ATP-dependent hsl protease ATP-binding subunit hslU (Heat shock protein hslU). P33138[U]+(COG1219[O]) ATP-dependent Clp protease ATP-binding subunit clpX. P32132[F]+(COG1217[N]) GTP-binding protein typA/BipA (Tyrosine phosphorylated protein A). P37653[AO]+(COG1215[M]) Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12). P75905[U]+(COG1215[M]) Hypothetical protein ycdQ. P76256[EN]+(COG1214[O]) Hypothetical protease yeaZ (EC 3.4.-.-). P30015[U]+(COG1201[R]) Probable ATP-dependent helicase lhr (EC 3.6.1.-) (Large helicase- related protein). P24230[C]+(COG1200[K] [L]) ATP-dependent DNA helicase recG (EC 3.6.1.-). P27296[C]+(COG1199[L]) Probable ATP-dependent helicase dinG (DNA-damage-inducible protein G). P76257[U]+(COG1199[L]) Probable ATP-dependent helicase yoaA. P17888[CJ]+(COG1198[L]) Primosomal protein N' (Replication factor Y). P30958[CD]+(COG1197[K] [L]) Transcription-repair coupling factor (TRCF). P17802[AC]+(COG1194[L]) A/G-specific adenine glycosylase (EC 3.2.2.-). P31804[D]+(COG1191[K]) RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28). P13030[F]+(COG1190[J]) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS). P14825[F]+(COG1190[J]) Lysyl-tRNA synthetase, heat inducible (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS). P45802[U]+(COG1188[J]) Heat shock protein 15 (HSP15). P75966[U]+(COG1187[J]) Hypothetical protein ymfC. P37765[U]+(COG1187[J]) Hypothetical protein yciL. P33918[U]+(COG1187[J]) Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (Uracil hydrolyase). P32684[U]+(COG1187[J]) Hypothetical protein yjbC. P28369[F]+(COG1186[J]) Peptide chain release factor homolog (RF-H). P40711[F]+(COG1186[J]) Hypothetical protein yaeJ. P07012[F]+(COG1186[J]) Peptide chain release factor 2 (RF-2). P05055[F]+(COG1185[J]) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase). P41407[B]+(COG1182[I]) Acyl carrier protein phosphodiesterase (EC 3.1.4.14) (ACP phosphodiesterase). P39286[U]+(COG1162[R]) Hypothetical protein yjeQ. P77254[U]+(COG1160[R]) Probable GTP-binding protein engA. P06616[K]+(COG1159[R]) GTP-binding protein era. P03002[D]+(COG1158[K]) Transcription termination factor rho. P52612[IO]+(COG1157[N]) Flagellum-specific ATP synthase (EC 3.6.3.14). P31220[I]+(COG1137[R]) Probable ABC transporter ATP-binding protein yhbG. P30750[I]+(COG1135[R]) D-methionine transport ATP-binding protein metN. P31060[CI]+(COG1119[P]) Putative molybdenum transport ATP-binding protein modF (Photorepair protein phrA). P07655[I]+(COG1117[P]) Phosphate transport ATP-binding protein pstB. P30143[I]+(COG1115[E]) Putative transporter yaaJ. P39369[L]+(COG1112[L]) Hypothetical protein yjhR. P75876[U]+(COG1092[R]) Hypothetical protein yccW. P13519[U]+(COG1077[D]) Rod shape-determining protein mreB. P76049[U]+(COG1073[R]) Hypothetical protein ycjY. P04335[U]+(COG1073[R]) Hypothetical protein yafA. P39298[U]+(COG1073[R]) Hypothetical protein yjfP. P77538[U]+(COG1073[R]) Hypothetical protein yfhR. P75867[EN]+(COG1067[O]) Putative protease La homolog (EC 3.4.21.-). P30140[O]+(COG1060[H] [R]) Thiazole biosynthesis protein thiH. P77808[O]+(COG1058[R]) CinA-like protein. P52137[U]+(COG1055[P]) Putative arsenical pump membrane protein (Fragment). P37310[U]+(COG1055[P]) Arsenical pump membrane protein. P75764[U]*(COG1048[C]) Hypothetical protein ybhJ. P77558[AHO]*(COG1045[E]) Putative colanic acid biosynthesis acetyltransferase wcaB (EC 2.3.1.-). P21645[AHO]+(COG1044[M]) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) (FirA protein) (Rifampicin resistance protein). P76100[U]+(COG1044[M]) Hypothetical protein ydcK. P10440[AHO]+(COG1043[M]) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) (UDP-N-acetylglucosamine acyltransferase). P46846[U]+(COG1040[R]) Hypothetical protein yhgH. P76262[U]+(COG0861[P] COG1253[N]) Hypothetical protein yoaE. P09170[K]+(COG0858[J]) Ribosome-binding factor A (P15B protein). P18198[J]+(COG0851[D]) Cell division topological specificity factor. P18196[J]+(COG0850[D]) Septum site-determining protein minC. P06137[J]+(COG0849[D]) Cell division protein ftsA. P30014[U]+(COG0847[L]) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T). P76281[C]+(COG0847[L]) Exodeoxyribonuclease X (EC 3.1.11.-) (Exonuclease X) (Exo X). P03007[CJ]+(COG0847[L]) DNA polymerase III, epsilon chain (EC 2.7.7.7). P07365[K]+(COG0835[N]) Chemotaxis protein cheW. Q47689[I]+(COG0833[E]) Probable S-methylmethionine permease. P25737[I]+(COG0833[E]) Lysine-specific permease. P02379[F]+(COG0828[J]) 30S ribosomal protein S21. P45527[EN]+(COG0826[O]) Putative protease yhbU precursor (EC 3.4.-.-). P76104[EN]+(COG0826[O]) Putative protease ydcP precursor (EC 3.4.-.-). P45475[U]+(COG0826[O]) Hypothetical protein yhbV. P76403[EN]+(COG0826[O]) Putative protease yegQ (EC 3.4.-.-). P08999[U]+(COG0824[R]) Protein ybgC. P77712[U]+(COG0824[R]) Hypothetical protein ybaW. P27433[HO]+(COG0821[M]) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (GcpE protein) (Protein E). P36979[U]+(COG0820[R]) Hypothetical protein yfgB. P24239[C]+(COG0817[L]) Crossover junction endodeoxyribonuclease ruvC (EC 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC). P52050[U]+(COG0816[L]) Hypothetical protein yqgF. P23930[EFHLO]+(COG0815[M]) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP N-acyltransferase) (Copper homeostasis protein cutE). P21516[NO]+(COG0809[J]) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) (Queuosine biosynthesis protein queA). P21504[K]+(COG0806[J]) 16S rRNA processing protein rimM (21K). P31805[U]+(COG0802[R]) Hypothetical protein yjeE. P05848[U]+(COG0799[S]) Hypothetical protein ybeB. P39340[U]+(COG0795[R]) Hypothetical protein yjgP. P39341[U]+(COG0795[R]) Hypothetical protein yjgQ. P23865[EN]+(COG0793[M]) Tail-specific protease precursor (EC 3.4.21.102) (Protease Re) (PRC protein) (C-terminal processing peptidase). P45465[U]+(COG0792[L]) Hypothetical protein yraN. P27430[K]+(COG0783[L]) DNA protection during starvation protein. P30128[D]+(COG0782[K]) Transcription elongation factor greB (Transcript cleavage factor greB). P40679[U]+(COG0782[K]) Regulator of nucleoside diphosphate kinase. P21346[D]+(COG0782[K]) Transcription elongation factor greA (Transcript cleavage factor greA). P04381[D]+(COG0781[K]) N utilization substance protein B (NusB protein). P03843[U]+(COG0779[S]) Hypothetical protein yhbC. P06984[CDFL]+(COG0776[L]) Integration host factor alpha-subunit (IHF-alpha). P08756[CDFL]+(COG0776[L]) Integration host factor beta-subunit (IHF-beta). P02341[J]+(COG0776[L]) DNA-binding protein HU-beta (NS1) (HU-1). P02342[J]+(COG0776[L]) DNA-binding protein HU-alpha (NS2) (HU-2). P24247[U]*(COG0775[F]) MTA/SAH nucleosidase (P46) [Includes: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16); S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)]. P37773[AJKO]*(COG0773[M]) UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) (Murein peptide ligase). P15035[U]+(COG0772[D]) Rod shape-determining protein rodA. P16457[AJ]+(COG0772[D]) Cell division protein ftsW. P04286[AEJKN]+(COG0768[M]) Peptidoglycan synthetase ftsI precursor (Penicillin-binding protein 3) (PBP-3). P08150[AEKN]+(COG0768[M]) Penicillin-binding protein 2 (PBP-2). P18391[HO]+(COG0764[I]) 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) (Beta-hydroxydecanoyl thioester dehydrase). P21774[AHO]+(COG0764[I]) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase) (17 kDa actomyosin component). P52058[U]+(COG0762[S]) Hypothetical protein yggT. P22565[HO]+(COG0761[I] [M]) IspH protein. P22847[U]+(COG0759[S]) Hypothetical protein yidD. P30852[U]+(COG0758[N] [L]) Smf protein. P37764[EN]+(COG0750[M]) Protease ecfE (EC 3.4.24.-). P10120[U]+(COG0742[L]) Putative methylase yhhF (EC 2.1.1.-). P30135[I]+(COG0741[M] COG0834[E]) Hypothetical protein yfhD. P52066[A]+(COG0741[M]) Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-) (Murein hydrolase C). P47737[U]+(COG0741[M]) X polypeptide (ORF 19) (P19 protein) (ORF169). P76009[A]+(COG0741[M]) Membrane-bound lytic murein transglycosylase E (EC 3.2.1.-) (Murein hydrolase E). P03810[A]+(COG0741[M]) Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) (Slt70) (Exomuramidase). P23931[AKN]+(COG0741[M]) Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) (Murein hydrolase D) (Regulatory protein dniR). Q46790[U]+(COG0741[M]) ORF_O138. P19245[EN]+(COG0740[N] [O]) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5). P24224[HLO]+(COG0736[I]) Holo-[acyl-carrier protein] synthase (EC 2.7.8.7) (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS). P06975[D]+(COG0735[P]) Ferric uptake regulation protein (Ferric uptake regulator). P32692[D]+(COG0735[P]) Zinc uptake regulation protein (Zinc uptake regulator). P39170[U]+(COG0729[M]) Unknown protein from 2D-page spots M62/M63/O3/O9/T35 precursor. P39320[U]+(COG0729[M]) Hypothetical protein ytfM precursor. P75932[U]+(COG0728[R]) Virulence factor mviN homolog. P71300[B]+(COG0727[R]) Hypothetical protein ykgJ. P75906[A]+(COG0726[G]) Hypothetical lipoprotein ycdR precursor. P31666[A]+(COG0726[G]) Hypothetical protein yadE precursor. Q46903[LO]+(COG0720[H]) Putative 6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12) (PTPS) (PTP synthase). P17577[U]+(COG0718[S]) Hypothetical protein ybaB. P41050[B]*(COG0716[C]) Flavodoxin 2. Q46917[B]*(COG0716[C]) Hypothetical protein yqcA. P03817[B]*(COG0716[C]) Protein mioC. P23243[B]*(COG0716[C]) Flavodoxin 1. P09391[AHLN]+(COG0705[R]) Protein glpG. P07656[U]+(COG0704[P]) Phosphate transport system protein phoU. P16694[U]+(COG0699[R]) Hypothetical protein yjdA. P12295[AC]+(COG0692[L]) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG). P32052[F]+(COG0691[O]) SsrA-binding protein (Small protein B). P16920[EI]+(COG0690[N]) Preprotein translocase secE subunit. P03842[U]+(COG0689[J]) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA nucleotidyltransferase). P37149[E]+(COG0682[M]) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-). P00803[EN]+(COG0681[N]) Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader peptidase I). P76093[EL]*(COG0671[I] COG2453[T]) Hypothetical protein ynbD. P75806[I]*(COG0671[I]) Hypothetical protein ybjG. P76445[I]*(COG0671[I]) Hypothetical protein yeiU. P10408[EI]+(COG0653[N]) Preprotein translocase secA subunit. P12638[C]+(COG0648[L]) Endonuclease IV (EC 3.1.21.2) (Endodeoxyribonuclease IV). P15302[AL]+(COG0647[G]) NagD protein. P07363[K]+(COG0643[N]) Chemotaxis protein cheA (EC 2.7.3.-). P31059[EN]+(COG0638[O]) ATP-dependent protease hslV (EC 3.4.25.-) (Heat shock protein hslV). P52062[O]+(COG0635[H]) Hypothetical protein yggW. P32131[O]+(COG0635[H]) Oxygen-independent coproporphyrinogen III oxidase (EC 1.-.-.-) (Coproporphyrinogenase) (Coprogen oxidase). P08576[CK]+(COG0632[L]) Holliday junction DNA helicase ruvA. P02339[CJ]+(COG0629[L]) Single-strand binding protein (SSB) (Helix-destabilizing protein). P18310[CJ]+(COG0629[L]) Single-strand binding protein (SSB) (Helix-destabilizing protein). P37622[U]+(COG0628[R]) Hypothetical protein yhhT. P77535[U]+(COG0628[R]) Hypothetical protein ydgG. P77406[I]+(COG0628[R]) Putative permease perM. P77175[U]+(COG0628[R]) Hypothetical protein ydiK. P29132[HLO]+(COG0623[I]) Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) (NADH- dependent enoyl-ACP reductase). P76495[U]+(COG0622[R]) Hypothetical protein yfcE. P77645[U]+(COG0621[J]) Hypothetical protein yleA. P75802[U]+(COG0621[J]) Hypothetical protein yliG. P06961[U]+(COG0617[J]) tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme). P13685[J]+(COG0617[J]) Poly(A) polymerase (EC 2.7.7.19) (PAP) (Plasmid copy number protein). P77766[CJ]+(COG0613[R]) Protein trpH. P37648[EN]+(COG0612[R]) Protein yhjJ precursor. P31828[EN]+(COG0612[R]) Probable zinc protease pqqL (EC 3.4.99.-). P21893[C]+(COG0608[L]) Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-). P22787[O]+(COG0606[O]) Hypothetical protein yifB (ORF III) [Contains: ORF I]. P77756[GLM]+(COG0603[R]) Hypothetical protein ybaX. P55139[U]+(COG0602[O]) Hypothetical protein ygcF. P39329[U]+(COG0602[O]) Anaerobic ribonucleoside-triphosphate reductase activating protein (EC 1.97.1.4) (Class III anaerobic ribonucleotide reductase small component). P76570[CJ]+(COG0593[L]) Hypothetical protein yfgE. P03004[CJ]+(COG0593[L]) Chromosomal replication initiator protein dnaA. P10443[CJ]+(COG0587[L]) DNA polymerase III alpha subunit (EC 2.7.7.7). P07654[I]+(COG0581[P]) Phosphate transport system permease protein pstA. P09372[U]+(COG0576[O]) GrpE protein (HSP-70 cofactor) (Heat shock protein B25.3) (HSP24). P76091[HO]*(COG0575[I]) Hypothetical protein ynbB. P07653[I]+(COG0573[P]) Phosphate transport system permease protein pstC. P05797[U]+(COG0571[K]) Ribonuclease III (EC 3.1.26.3) (RNase III). P00579[D]+(COG0568[K]) RNA polymerase sigma factor rpoD (Sigma-70). P00580[D]+(COG0568[K]) RNA polymerase sigma-32 factor (Heat shock regulatory protein F33.4). P13445[D]+(COG0568[K]) RNA polymerase sigma factor rpoS (Sigma-38). P39290[U]+(COG0566[J]) Hypothetical tRNA/rRNA methyltransferase yjfH (EC 2.1.1.-). P19396[U]+(COG0566[J]) tRNA (Guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) (tRNA [GM18] methyltransferase). P33635[U]+(COG0566[J]) Hypothetical tRNA/rRNA methyltransferase yfiF (EC 2.1.1.-). P23851[U]+(COG0564[J]) Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). P39219[U]+(COG0564[J]) Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). Q46918[U]+(COG0564[J]) Hypothetical protein yqcB. P33643[U]+(COG0564[J]) Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase). P76090[HO]*(COG0558[I]) Hypothetical protein ynbA. P76226[HO]*(COG0558[I]) Hypothetical protein ynjF. P21499[D]+(COG0557[K]) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein). P30850[D]+(COG0557[K]) Exoribonuclease II (EC 3.1.13.1) (Ribonuclease II) (RNase II). P07025[CK]+(COG0556[L]) Excinuclease ABC subunit B. P10121[EIJ]+(COG0552[N]) Cell division protein ftsY. P45771[CJ]+(COG0551[L]) Hypothetical protein yrdD. P06612[CJ]+(COG0550[L] COG0551[L]) DNA topoisomerase I (EC 5.99.1.2) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase). P14294[CJ]+(COG0550[L]) DNA topoisomerase III (EC 5.99.1.2). P32662[AL]+(COG0546[R]) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGP). P22257[EJ]+(COG0544[O]) Trigger factor (TF). P15716[U]+(COG0542[O]) ATP-dependent clp protease ATP-binding subunit clpA. P03815[U]+(COG0542[O]) ClpB protein (Heat shock protein F84.1). P07019[EI]+(COG0541[N]) Signal recognition particle protein (Fifty-four homolog) (P48). P02349[F]+(COG0539[J]) 30S ribosomal protein S1. P42641[U]+(COG0536[R]) Hypothetical GTP-binding protein yhbZ. P76352[I]+(COG0534[Q]) Hypothetical protein yeeO. P37340[I]+(COG0534[Q]) Multidrug resistance protein norM (Na(+)/drug antiporter) (Multidrug- efflux transporter). P28303[U]+(COG0534[Q]) DNA-damage-inducible protein F. P05852[EN]+(COG0533[O]) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57) (Glycoprotease). P02995[F]+(COG0532[J]) Translation initiation factor IF-2. P02354[FL]+(COG0522[J]) 30S ribosomal protein S4. P28694[O]+(COG0521[H]) Molybdopterin biosynthesis mog protein. P30746[O]+(COG0521[H]) Molybdenum cofactor biosynthesis protein B. P75948[U]+(COG0510[M]) Hypothetical protein ycfN. P76092[U]+(COG0500[Q] [R] COG2267[I]) Hypothetical protein ynbC. P05824[CI]+(COG0497[L]) DNA repair protein recN (Recombination protein N). P07813[F]+(COG0495[J]) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS). P37127[BGM]*(COG0493[R] [E] COG1142[C]) AegA protein. Q46820[BGLM]*(COG0493[R] [E] COG1142[C]) Hypothetical protein ygfT. P76440[B]*(COG0493[R] [E]) Hypothetical oxidoreductase yeiT. Q46811[B]*(COG0493[R] [E]) Hypothetical protein ygfK. P09625[BL]+(COG0492[O]) Thioredoxin reductase (EC 1.8.1.9) (TRXR). P25522[U]+(COG0486[R]) Probable tRNA modification GTPase trmE. P25745[U]+(COG0482[J]) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61). P07682[F]+(COG0481[N]) GTP-binding protein lepA. P33998[F]+(COG0480[J]) Peptide chain release factor 3 (RF-3). P02996[F]+(COG0480[J]) Elongation factor G (EF-G). P12282[O]+(COG0476[H]) Molybdopterin biosynthesis protein moeB. P30138[O]+(COG0476[H]) Adenylyltransferase thiF (EC 2.7.7.-). P03017[CK]+(COG0468[L]) RecA protein (Recombinase A). P08177[EN]+(COG0466[O]) ATP-dependent protease La (EC 3.4.21.53). P28691[EJN]+(COG0465[O]) Cell division protein ftsH (EC 3.4.24.-). P76594[U]+(COG0454[R] [K] COG1042[C]) Hypothetical protein yfiQ. P17112[U]+(COG0445[D]) Glucose inhibited division protein A. P36541[U]+(COG0443[O]) Chaperone protein hscA (Hsc66). P04475[CJ]+(COG0443[O]) Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70). P36928[U]+(COG0443[O]) Hypothetical chaperone protein yegD. P77277[U]+(COG0443[O]) Ethanolamine utilization protein eutJ. P77319[U]+(COG0443[O]) Chaperone protein hscC (Hsc62). P16659[F]+(COG0442[J]) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase) (ProRS) (Global RNA synthesis factor). P77727[GO]*(COG0436[E]) Probable aminotransferase yfbQ (EC 2.6.1.-). P77806[GO]*(COG0436[E]) Hypothetical aminotransferase ybdL (EC 2.6.1.-). P77434[GO]*(COG0436[E]) Hypothetical aminotransferase yfdZ (EC 2.6.1.-). P39342[U]+(COG0433[R]) Hypothetical protein yjgR. P32698[U]+(COG0432[S]) Hypothetical protein yjbQ. P31465[U]*(COG0431[R]) Hypothetical protein yieF. P27244[U]+(COG0424[D]) Maf-like protein yceF. P25536[U]+(COG0424[D]) Maf-like protein yhdE. P13457[CJ]+(COG0420[L]) Nuclease sbcCD subunit D. P13458[CIJ]+(COG0419[L]) Exonuclease sbcC. P27247[HO]+(COG0416[I]) Fatty acid/phospholipid synthesis protein plsX. P00914[C]+(COG0415[L]) Deoxyribodipyrimidine photolyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme). P18956[O]+(COG0405[E]) Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2). P77649[U]+(COG0397[S]) Hypothetical protein ydiU. P75767[U]+(COG0391[S]) Hypothetical protein ybhK. P31801[I]+(COG0387[P]) Calcium/proton antiporter. P06610[L]+(COG0386[O]) Vitamin B12 transport periplasmic protein btuE. P13580[O]+(COG0373[H]) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR). P02998[F]+(COG0361[J]) Translation initiation factor IF-1. P02358[F]+(COG0360[J]) 30S ribosomal protein S6. P02418[F]+(COG0359[J]) 50S ribosomal protein L9. P02923[CJ]+(COG0358[L]) DNA primase (EC 2.7.7.-). P17113[J]+(COG0357[M]) Methyltransferase gidB (EC 2.1.-.-) (Glucose inhibited division protein B). P12727[C]+(COG0353[L]) Recombination protein recR. P31056[U]+(COG0344[S]) Hypothetical protein ygiH. P19675[NO]+(COG0343[J]) Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (tRNA-guanine transglycosylase) (Guanine insertion enzyme). P19673[EI]+(COG0342[N]) Protein-export membrane protein secD. P19674[EI]+(COG0341[N]) Protein-export membrane protein secF. P06709[DE]+(COG0340[H] COG1654[H] [K]) BirA bifunctional protein [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)]. P07020[U]+(COG0336[J]) tRNA (Guanine-N(1)-)-methyltransferase (EC 2.1.1.31) (M1G- methyltransferase) (tRNA [GM37] methyltransferase). P02420[F]+(COG0335[J]) 50S ribosomal protein L19. P02435[F]+(COG0333[J]) 50S ribosomal protein L32. P24249[HO]+(COG0332[I]) 3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase III) (KAS III). P25715[HLO]+(COG0331[I]) Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) (MCT). P75682[U]*(COG0329[M] [E]) Hypothetical protein yagE. P39359[U]*(COG0329[M] [E]) Hypothetical protein yjhH. P75743[U]+(COG0327[S]) Hypothetical protein ybgI. P52054[U]+(COG0325[R]) Hypothetical protein yggS. P16384[U]+(COG0324[J]) tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT). P23367[CJ]+(COG0323[L]) DNA mismatch repair protein mutL. P76213[C]+(COG0322[L]) Hypothetical protein ydjQ. P07028[CK]+(COG0322[L]) Excinuclease ABC subunit C. P30976[EO]+(COG0321[H]) Lipoate-protein ligase B (EC 6.-.-.-) (Lipoate biosynthesis protein B). P25845[O]+(COG0320[H]) Lipoic acid synthetase (Lip-syn) (Lipoate synthase). P77385[U]+(COG0319[R]) Hypothetical protein ybeY. P46847[U]+(COG0316[S] COG0694[O]) Protein yhgI. P45528[L]+(COG0313[R]) Hypothetical protein yraL. P04825[EN]+(COG0308[E]) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase). P37308[I]+(COG0306[P]) Low-affinity inorganic phosphate transporter 1. P43676[I]+(COG0306[P]) Probable low-affinity inorganic phosphate transporter 2. P03005[CJ]+(COG0305[L]) Replicative DNA helicase (EC 3.6.1.-). P39435[HO]+(COG0304[Q] [I]) 3-oxoacyl-[acyl-carrier-protein] synthase II (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase II) (KAS II). P14926[HO]+(COG0304[Q] [I]) 3-oxoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41) (Beta- ketoacyl-ACP synthase I) (KAS I). P77718[O]+(COG0301[H] COG0607[P]) Thiamine biosynthesis protein thiI. P28692[K]+(COG0293[J]) Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) (Cell division protein ftsJ). P02421[F]+(COG0292[J]) 50S ribosomal protein L20. P07085[F]+(COG0291[J]) 50S ribosomal protein L35 (Ribosomal protein A). P02999[FL]+(COG0290[J]) Translation initiation factor IF-3. P18595[U]+(COG0275[M]) S-adenosyl-methyltransferase mraW (EC 2.1.1.-). P25772[CJ]+(COG0272[L]) Hypothetical DNA ligase-like protein yicF. P15042[CJ]+(COG0272[L]) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD+]). P11876[C]+(COG0270[L]) DNA-cytosine methyltransferase (EC 2.1.1.73) (M.EcoDcm). P02378[F]+(COG0268[J]) 30S ribosomal protein S20. P02436[F]+(COG0267[J]) 50S ribosomal protein L33. P02997[F]+(COG0264[J]) Elongation factor Ts (EF-Ts). P02422[F]+(COG0261[J]) 50S ribosomal protein L21. P21194[F]+(COG0257[J]) 50S ribosomal protein L36 (Ribosomal protein B). P02419[F]+(COG0256[J]) 50S ribosomal protein L18. P02429[F]+(COG0255[J]) 50S ribosomal protein L29. P71302[F]+(COG0254[J]) 50S ribosomal protein L31 type B-1. P02432[F]+(COG0254[J]) 50S ribosomal protein L31. P16921[D]+(COG0250[K]) Transcription antitermination protein nusG. P26614[ADHO]+(COG0250[K]) Transcriptional activator rfaH. P23909[CJ]+(COG0249[L]) DNA mismatch repair protein mutS. P29014[U]*(COG0248[F] [P]) Exopolyphosphatase (EC 3.6.1.11) (ExopolyPase) (Metaphosphatase). P02408[FL]+(COG0244[J]) 50S ribosomal protein L10 (L8). P27251[F]+(COG0242[J]) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide deformylase). P31546[L]*(COG0241[E]) Hypothetical protein yaeD. P37002[U]+(COG0239[D]) Protein crcB. P02374[F]+(COG0238[J]) 30S ribosomal protein S18. P02901[HO]+(COG0236[Q] [I]) Acyl carrier protein (ACP) (Cytosolic activating factor) (CAF) (Fatty acid synthase acyl carrier protein). P05380[J]+(COG0234[O]) 10 kDa chaperonin (Protein Cpn10) (groES protein). P16174[F]+(COG0233[J]) Ribosome recycling factor (Ribosome releasing factor) (RRF). P33028[F]+(COG0231[J]) Protein yeiP. P33398[F]+(COG0231[J]) Elongation factor P (EF-P). P39903[U]+(COG0229[O]) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6). P02372[F]+(COG0228[J]) 30S ribosomal protein S16. P02428[F]+(COG0227[J]) 50S ribosomal protein L28. P06128[I]+(COG0226[P]) Phosphate-binding periplasmic protein precursor (PBP). P27110[E]+(COG0225[O]) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6) (Protein- methionine-S-oxide reductase) (Peptide Met(O) reductase). P77398[O]+(COG0223[J] COG0451[G] [M]) Hypothetical protein yfbG. P23882[FO]+(COG0223[J]) Methionyl-tRNA formyltransferase (EC 2.1.2.9). P02392[F]+(COG0222[J]) 50S ribosomal protein L7/L12 (L8). P17288[L]+(COG0221[C]) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase). P32049[U]+(COG0220[R]) Hypothetical methyltransferase yggH (EC 2.1.1.-). P24253[J]+(COG0218[R]) Probable GTP-binding protein engB. P76351[U]+(COG0217[S]) Hypothetical protein yeeN. P24237[U]+(COG0217[S]) Protein yebC. P07011[F]+(COG0216[J]) Peptide chain release factor 1 (RF-1). P21888[F]+(COG0215[J]) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS). P09160[L]+(COG0212[H]) Hypothetical protein ygfA. P02427[F]+(COG0211[J]) 50S ribosomal protein L27. P06138[J]+(COG0206[D]) Cell division protein ftsZ. P02416[F]+(COG0203[J]) 50S ribosomal protein L17. P00574[U]+(COG0202[K]) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit). P03844[EI]+(COG0201[N]) Preprotein translocase secY subunit. P02413[F]+(COG0200[J]) 50S ribosomal protein L15. P02370[F]+(COG0199[J]) 30S ribosomal protein S14. P02425[F]+(COG0198[J]) 50S ribosomal protein L24. P02414[F]+(COG0197[J]) 50S ribosomal protein L16. P03003[U]+(COG0195[K]) N utilization substance protein A (nusA protein) (L factor). P16690[U]*(COG0194[F]) ATP-binding protein phnN. P23932[F]+(COG0193[J]) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH). P77704[AN]+(COG0191[G]) Hypothetical protein ydjI. P17116[EFK]*(COG0189[H] [J]) Ribosomal protein S6 modification protein. P02373[F]+(COG0186[J]) 30S ribosomal protein S17. P02375[F]+(COG0185[J]) 30S ribosomal protein S19. P02371[F]+(COG0184[J]) 30S ribosomal protein S15. P00954[F]+(COG0180[J]) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS). P07671[CIK]+(COG0178[L]) Excinuclease ABC subunit A. P78061[L]*(COG0174[E]) Putative glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia ligase). P21889[F]+(COG0173[J]) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS). P09156[F]+(COG0172[J]) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS). P28244[GLMO]*(COG0169[E]) Hypothetical shikimate 5-dehydrogenase-like protein ydiB. P25889[BO]*(COG0167[F] COG1146[C]) Hypothetical protein yeiA. P10442[U]+(COG0164[L]) Ribonuclease HII (EC 3.1.26.4) (RNase HII). P42588[G]*(COG0160[E]) Probable ornithine aminotransferase (EC 2.6.1.13) (Ornithine--oxo-acid aminotransferase). P50457[GL]*(COG0160[E]) 4-aminobutyrate aminotransferase (EC 2.6.1.19) (Gamma-amino-N-butyrate transaminase) (GABA transaminase) (Glutamate:succinic semialdehyde transaminase) (GABA aminotransferase) (GABA-AT). P76273[U]+(COG0144[J] COG3270[S]) Hypothetical protein yebU. P36929[D]+(COG0144[J]) SUN protein (FMU protein). P08390[G]*(COG0136[E]) USG-1 protein. P09171[U]+(COG0130[J]) tRNA pseudouridine synthase B (EC 4.2.1.70) (tRNA pseudouridine 55 synthase) (Psi55 synthase) (Pseudouridylate synthase) (Uracil hydrolyase) (P35 protein). P52061[U]+(COG0127[F]) HAM1 protein homolog. P04804[F]+(COG0124[J]) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS). P75864[C]+(COG0116[L] COG1092[R]) Hypothetical protein ycbY. P02363[F]+(COG0103[J]) 30S ribosomal protein S9. P02410[F]+(COG0102[J]) 50S ribosomal protein L13. P07649[U]+(COG0101[J]) tRNA pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I). P02366[F]+(COG0100[J]) 30S ribosomal protein S11. P02369[F]+(COG0099[J]) 30S ribosomal protein S13. P02356[F]+(COG0098[J]) 30S ribosomal protein S5. P02390[F]+(COG0097[J]) 50S ribosomal protein L6. P02361[FL]+(COG0096[J]) 30S ribosomal protein S8. P32099[E]+(COG0095[H]) Lipoate-protein ligase A (EC 6.-.-.-). P02389[F]+(COG0094[J]) 50S ribosomal protein L5. P02411[F]+(COG0093[J]) 50S ribosomal protein L14. P02352[F]+(COG0092[J]) 30S ribosomal protein S3. P02423[F]+(COG0091[J]) 50S ribosomal protein L22. P02387[F]+(COG0090[J]) 50S ribosomal protein L2. P02424[F]+(COG0089[J]) 50S ribosomal protein L23. P02388[FL]+(COG0088[J]) 50S ribosomal protein L4. P02386[F]+(COG0087[J]) 50S ribosomal protein L3. P00577[U]+(COG0086[K]) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (Transcriptase beta' chain) (RNA polymerase beta' subunit). P00575[U]+(COG0085[K]) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (Transcriptase beta chain) (RNA polymerase beta subunit). P02384[FL]+(COG0081[J]) 50S ribosomal protein L1. P02409[F]+(COG0080[J]) 50S ribosomal protein L11. P37768[U]+(COG0061[R]) Probable inorganic polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase). P00956[F]+(COG0060[J]) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS). P33898[AN]*(COG0057[G]) Glyceraldehyde 3-phosphate dehydrogenase C (EC 1.2.1.12) (GAPDH-C). P02351[F]+(COG0052[J]) 30S ribosomal protein S2. P02364[F]+(COG0051[J]) 30S ribosomal protein S10. P02990[F]+(COG0050[J] [E]) Elongation factor Tu (EF-Tu) (P-43). P02359[F]+(COG0049[J]) 30S ribosomal protein S7. P02367[F]+(COG0048[J]) 30S ribosomal protein S12. Q46806[U]*(COG0044[F]) Hypothetical hydrolase ygeZ (EC 3.-.-.-). P25717[U]+(COG0042[R]) Hypothetical protein yhdG. P33371[U]+(COG0042[R]) Hypothetical protein yohI. P32695[U]+(COG0042[R]) Hypothetical protein yjbN. P06992[U]+(COG0030[J]) Dimethyladenosine transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase). P07906[EN]+(COG0024[J]) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase M). P08245[FL]+(COG0023[J]) Protein yciH. P11875[F]+(COG0018[J]) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA ligase) (ArgRS). P17242[F]+(COG0017[J]) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (Asparagine--tRNA ligase) (AsnRS). P00957[F]+(COG0013[J]) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS). P27305[F]+(COG0008[J]) Hypothetical protein yadB. P00962[F]+(COG0008[J]) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA ligase) (GlnRS). P04805[F]+(COG0008[J]) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS). P15034[EN]+(COG0006[E]) Xaa-Pro aminopeptidase (EC 3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II) (APP-II) (Aminoacylproline aminopeptidase). P76524[EN]+(COG0006[E]) Putative peptidase ypdF (EC 3.4.-.-). P21165[EN]+(COG0006[E]) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase). P37905[I]+(COG0004[P]) Probable ammonium transporter. [cluster '0' has 355 of 820 proteins with EC-number annotated.] Cluster '7' (COG majority vote 'cell', protein majority vote 'mix', 40 proteins in cluster) COLANSYN-PWY GLUCOSE1PMETAB-PWY GALACTMETAB-PWY COLANSYN-PWY GALACTMETAB-PWY ECASYN-PWY SO4ASSIM-PWY COLANSYN-PWY ENZYME: GALU_ECOLI P25520[O] (COG1210[M]) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase). ENZYME: GM4D_ECOLI P32054[AHO] (COG1089[M]) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase). ENZYME: GALE_ECOLI P09147[U] (COG1087[M]) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP- galactose 4-epimerase). ENZYME: CYSC_ECOLI P23846[GLM] (COG0529[P]) Adenylylsulfate kinase (EC 2.7.1.25) (APS kinase) (Adenosine- 5'phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'- phosphotransferase). ENZYME: RFFA_ECOLI P27833[AHO] (COG0399[M]) Lipopolysaccharide biosynthesis protein rffA. P71238[AHO]+(NOG10140[S]) Putative colanic acid polymerase. P33355[U]+(NOG05923[S]) Hypothetical protein yehS. P16683[I]+(COG3639[P]) Phosphonates transport system permease protein phnE. P16677[I]+(COG3638[P]) Phosphonates transport ATP-binding protein phnC. P16688[U]+(COG3627[P]) PhnJ protein. P16687[U]+(COG3626[P]) PhnI protein. P16686[U]+(COG3625[P]) PhnH protein. P16685[U]+(COG3624[P]) PhnG protein. P16689[A]+(COG3454[P]) PhnM protein. P16682[I]+(COG3221[P]) Phosphonates-binding periplasmic protein precursor. P76071[C]+(COG3039[L]) Transposase insH for insertion sequence element IS5Y. P03837[C]+(COG3039[L]) Transposase insH for insertion sequence element IS5. P16680[U]+(COG2824[P]) PhnA protein. P16681[U]+(COG2764[S]) PhnB protein. P71242[AHO]+(COG2327[S]) Colanic acid biosynthesis protein wcaK. P71241[AHO]+(COG2148[M]) Putative colanic biosynthesis UDP-glucose lipid carrier transferase. P76038[U]+(COG2071[R]) Hypothetical protein ycjL. P23855[D]+(COG1983[K] [T]) Phage shock protein C. P76388[AIO]+(COG1596[M]) Putative polysaccharide export protein wza precursor. P75881[I]+(COG1596[M]) Putative polysaccharide export protein yccZ precursor. P16692[U]+(COG1235[R]) PhnP protein. P78083[AHO]*(COG1210[M]) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase). P16678[I]+(COG1101[G] [P] [R] [E]) Phosphonates transport ATP-binding protein phnK. P77279[I]+(COG1101[G] [P] [R] [E]) Hypothetical ABC transporter ATP-binding protein ybbL. P76387[AHO]+(COG0489[D] COG3206[N]) Tyrosine-protein kinase wzc (EC 2.7.1.112). P38134[AHO]+(COG0489[D] COG3206[N]) Tyrosine-protein kinase etk (EC 2.7.1.112). P21590[U]+(COG0489[D]) Mrp protein. P77690[U]*(COG0399[M]) Hypothetical protein yfbE. P51001[AHO]+(COG0279[G]) Phosphoheptose isomerase (EC 5.-.-.-). P45466[AHO]+(COG0279[G]) Hypothetical protein yraO. P07464[AO]+(COG0110[R]) Galactoside O-acetyltransferase (EC 2.3.1.18) (Thiogalactoside acetyltransferase). P71240[AHO]+(COG0110[R]) Putative colanic acid biosynthesis acetyltransferase wcaF (EC 2.3.1.-). P37750[AHO]+(COG0110[R]) Putative lipopolysaccharide biosynthesis O-acetyl transferase wbbJ (EC 2.3.1.-). P75697[U]+(COG0110[R]) From BASES 379180 to 389460 (Section 33 of 400) of the complete genome (Section 33 of 400). P77791[U]+(COG0110[R]) Maltose O-acetyltransferase (EC 2.3.1.79) (Maltose transacetylase). [cluster '7' has 12 of 40 proteins with EC-number annotated.] Cluster '8' (COG majority vote 'metab', protein majority vote 'I', 52 proteins in cluster) SORBDEG-PWY GALACTITOLCAT-PWY MANNIDEG-PWY GLYCOLYSIS SORBDEG-PWY MANNIDEG-PWY GLYCOLYSIS GLUCONEO-PWY PANTOSYN-PWY PWY0-44 MANNIDEG-PWY NONOXIPENT-PWY PWY0-44 GLUCONSUPER-PWY NONOXIPENT-PWY RIBOKIN-PWY GALACTITOLCAT-PWY NONOXIPENT-PWY ENZYME: GATD_ECOLI P37190[A] (NOG21032[S]) Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251). ENZYME: ALSE_ECOLI P32719[A] (NOG21015[S]) D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-). ENZYME: MTLD_ECOLI P09424[L] (NOG21006[S]) Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17). ENZYME: ALF1_ECOLI P71295[AN] (COG1830[G]) Fructose-bisphosphate aldolase class I (EC 4.1.2.13) (FBP aldolase). ENZYME: K6P2_ECOLI P06999[AN] (COG1105[G]) 6-phosphofructokinase isozyme 2 (EC 2.7.1.11) (Phosphofructokinase-2). ENZYME: COAA_ECOLI P15044[O] (COG1072[H]) Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid kinase) (Rts protein). ENZYME: RPIB_ECOLI P37351[AN] (COG0698[G]) Ribose 5-phosphate isomerase B (EC 5.3.1.6) (Phosphoriboisomerase B). ENZYME: TALB_ECOLI P30148[AN] (COG0176[G]) Transaldolase B (EC 2.2.1.2). ENZYME: TALA_ECOLI P78258[AN] (COG0176[G]) Transaldolase A (EC 2.2.1.2). P39362[A]*(NOG21015[S]) Protein sgcE (EC 5.1.3.-). P58035[I]+(NOG09476[S]) Putative phosphotransferase enzyme II, B component sgcB (EC 2.7.1.69). P37188[AI]+(NOG07977[S]) PTS system, galactitol-specific IIB component (EIIB-GAT) (Galacticol- permease IIB component) (Phosphotransferase enzyme II, B component) (EC 2.7.1.69). P32668[U]+(NOG05760[S]) Hypothetical protein yijF precursor. P37189[AI]+(NOG04338[S]) PTS system, galactitol-specific IIC component (EIIC-GAT) (Galacticol- permease IIC component) (Phosphotransferase enzyme II, C component). P39302[I]+(COG3414[G]) Unknown pentitol phosphotransferase enzyme II, B component (EC 2.7.1.69). P37794[U]+(COG3394[S]) Hypothetical protein ydjC. P39301[I]+(COG3037[S]) Putative transport protein sgaT. P31432[U]+(COG2860[S]) Hypothetical protein yicG. P37027[U]+(COG2860[S]) Hypothetical protein yadS. P32059[I]+(COG2213[G]) PTS system, mannitol (Cryptic)-specific IIBC component (EIIBC-(C)MTL) (Mannitol (Cryptic)-permease IIBC component) (Phosphotransferase enzyme II, BC component) (EC 2.7.1.69). P76113[U]+(COG2130[R]) Putative NADP-dependent oxidoreductase yncB (EC 1.-.-.-). P33996[I]+(COG1925[G]) Phosphocarrier protein NPr (Nitrogen related HPr). P07006[I]+(COG1925[G]) Phosphocarrier protein HPr (Histidine-containing protein). P76143[U]*(COG1830[G]) Putative aldolase yneB (EC 4.2.1.-). P00550[I]+(COG1762[G] [T] COG2213[G]) PTS system, mannitol-specific IIABC component (EIIABC-MTL) (Mannitol- permease IIABC component) (Phosphotransferase enzyme II, ABC component) (EC 2.7.1.69) (EII-MTL). P24217[I]+(COG1762[G] [T] COG1925[G]) PTS system, fructose-specific IIA/FPr component (EIIA-Fru) (Fructose- permease IIA/FPr component) (Phosphotransferase enzyme II, A/FPr component) (EC 2.7.1.69) (Phosphotransferase FPr protein) (Pseudo- HPr) (EIII-Fru) (Fructose PTS diphosphoryl transfer protein). P39363[I]+(COG1762[G] [T]) Putative phosphotransferase enzyme II, A component sgcA (EC 2.7.1.69). P37187[AI]+(COG1762[G] [T]) PTS system, galactitol-specific IIA component (EIIA-GAT) (Galacticol- permease IIA component) (Phosphotransferase enzyme II, A component) (EC 2.7.1.69). P39303[I]+(COG1762[G] [T]) Unknown pentitol phosphotransferase enzyme II, A component (EC 2.7.1.69). P32058[I]+(COG1762[G] [T]) PTS system, mannitol (Cryptic)-specific IIA component (EIIA-(C)MTL) (Mannitol (Cryptic)-permease IIA component) (Phosphotransferase enzyme II, A component) (EC 2.7.1.69). P31222[I]+(COG1762[G] [T]) Nitrogen regulatory IIA protein (EC 2.7.1.69) (Enzyme IIA-NTR) (Phosphotransferase enzyme II, A component). P32155[I]+(COG1762[G] [T]) PTS system, fructose-like-1 IIA component (Phosphotransferase enzyme II, A component) (EC 2.7.1.69). P17334[I]+(COG1455[G]) PTS system, cellobiose-specific IIC component (EIIC-Cel) (Cellobiose- permease IIC component) (Phosphotransferase enzyme II, C component). P17335[I]+(COG1447[G]) PTS system, cellobiose-specific IIA component (EIIA-Cel) (Cellobiose- permease IIA component) (Phosphotransferase enzyme II, A component) (EC 2.7.1.69) (EIII-Cel). P32676[I]+(COG1445[G]) PTS system, fructose-like-2 IIB component 2 (Phosphotransferase enzyme II, B component) (EC 2.7.1.69). P76525[I]+(COG1445[G]) Putative PTS system IIB component ypdH (EC 2.7.1.69). P32673[I]+(COG1445[G]) PTS system, fructose-like-2 IIB component 1 (Phosphotransferase enzyme II, B component) (EC 2.7.1.69). P17409[I]+(COG1440[G]) PTS system, cellobiose-specific IIB component (EIIB-Cel) (Cellobiose- permease IIB component) (Phosphotransferase enzyme II, B component) (EC 2.7.1.69). P54745[I]+(COG1299[G] COG1445[G] COG1762[G] [T]) HRSA protein (EC 2.7.1.69). P20966[I]+(COG1299[G] COG1445[G]) PTS system, fructose-specific IIBC component (EIIBC-Fru) (Fructose- permease IIBC component) (Phosphotransferase enzyme II, BC component) (EC 2.7.1.69) (EII-Fru). P32154[I]+(COG1299[G] COG1445[G]) PTS system, fructose-like-1 IIBC component (Phosphotransferase enzyme II, BC component) (EC 2.7.1.69). P32672[I]+(COG1299[G]) PTS system, fructose-like-2 IIC component (Phosphotransferase enzyme II, C component). P77579[I]+(COG1299[G]) Putative PTS system IIC component ypdG (EC 2.7.1.69). P23539[U]*(COG1105[G]) 1-phosphofructokinase (EC 2.7.1.56) (Fructose 1-phosphate kinase). P37349[IL]+(COG1080[G] COG1925[G] COG3412[S]) Hypothetical protein ycgC. P77439[IL]+(COG1080[G] COG1762[G] [T] COG1925[G]) Putative phosphoenolpyruvate-protein phosphotransferase ypdD (EC 2.7.3.9) (Phosphotransferase system, enzyme I). P32670[IL]+(COG1080[G] COG1762[G] [T] COG1925[G]) Phosphoenolpyruvate-protein phosphotransferase ptsA (EC 2.7.3.9) (Phosphotransferase system, enzyme I) (Enzyme I-Ani). P08839[IL]+(COG1080[G]) Phosphoenolpyruvate-protein phosphotransferase (EC 2.7.3.9) (Phosphotransferase system, enzyme I). P11664[U]*(COG1072[H]) Hypothetical protein yggC. P39364[U]+(COG0434[R]) Putative sgc region protein sgcQ. P78055[A]*(COG0176[G]) Fructose-6-phosphate aldolase 1 (EC 4.1.2.-). P32669[A]*(COG0176[G]) Fructose-6-phosphate aldolase 2 (EC 4.1.2.-). [cluster '8' has 39 of 52 proteins with EC-number annotated.] Cluster '109' (COG majority vote 'metab', protein majority vote 'go_metab_others', 3 proteins in cluster) PANTOSYN-PWY PANTOSYN-PWY ENZYME: PANC_ECOLI P31663[O] (COG0414[H]) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate synthetase) (Pantoate activating enzyme). ENZYME: PANB_ECOLI P31057[O] (COG0413[H]) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) (Ketopantoate hydroxymethyltransferase). P37018[U]+(NOG17100[S]) Hypothetical protein yadM precursor. [cluster '109' has 2 of 3 proteins with EC-number annotated.] Cluster '103' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) THREOCAT-PWY 2PHENDEG-PWY ENZYME: AMO_ECOLI P46883[U] (NOG04154[S]) Copper amine oxidase precursor (EC 1.4.3.6) (Tyramine oxidase) (2-phenylenthylamine oxidase). P30176[U]+(COG3236[S]) Hypothetical protein ybiA. P05637[U]+(COG0639[T]) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5"'- P1,P4-tetraphosphate pyrophosphohydrolase). P55798[U]+(COG0639[T]) Serine/threonine protein phosphatase 1 (EC 3.1.3.16). P55799[U]+(COG0639[T]) Serine/threonine protein phosphatase 2 (EC 3.1.3.16). [cluster '103' has 4 of 5 proteins with EC-number annotated.] Cluster '1' (COG majority vote 'unknown', protein majority vote 'U', 318 proteins in cluster) PLPSAL-PWY ECASYN-PWY ANARESP1-PWY ANARESPACC-PWY FERMENTATION-PWY ANARESP1-PWY ANARESPACC-PWY FERMENTATION-PWY FOLSYN-PWY ANARESP1-PWY ANARESPACC-PWY FERMENTATION-PWY GLYCEROLMETAB-PWY AERESPDON-PWY ANARESPDON-PWY ANARESP1-PWY ANARESPACC-PWY FERMENTATION-PWY GLYCEROLMETAB-PWY AERESPDON-PWY ANARESPDON-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY AST-PWY AST-PWY AST-PWY LYXMET-PWY ENZYME: PABC_ECOLI P28305[GL] (NOG21026[S]) 4-amino-4-deoxychorismate lyase (EC 4.-.-.-) (ADC lyase) (ADCL). ENZYME: FRDA_ECOLI P00363[B] (NOG21022[S]) Fumarate reductase flavoprotein subunit (EC 1.3.99.1). ENZYME: LYXK_ECOLI P37677[A] (NOG21019[S]) Cryptic L-xylulose kinase (EC 2.7.1.53) (L-xylulokinase). ENZYME: FRDB_ECOLI P00364[B] (NOG21011[S]) Fumarate reductase iron-sulfur protein (EC 1.3.99.1). ENZYME: GLPA_ECOLI P13032[ABHLN] (NOG21009[S]) Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.99.5) (G-3-P dehydrogenase). ENZYME: PDXY_ECOLI P77150[U] (NOG21004[S]) Pyridoxamine kinase (EC 2.7.1.35) (PM kinase). ENZYME: NAPC_ECOLI P33932[B] (NOG21000[S]) Cytochrome c-type protein napC. ENZYME: WZYE_ECOLI P27835[U] (NOG04333[S]) Putative ECA polymerase. ENZYME: ASTB_ECOLI P76216[GL] (NOG04165[S]) Succinylarginine dihydrolase (EC 3.-.-.-). ENZYME: ASTA_ECOLI P76218[GL] (COG3138[E]) Arginine N-succinyltransferase (EC 2.3.1.109) (AOST). ENZYME: FRDD_ECOLI P03806[U] (COG3080[C]) Fumarate reductase 13 kDa hydrophobic protein. ENZYME: GLPB_ECOLI P13033[U] (COG3075[E]) Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.99.5) (G-3-P dehydrogenase). ENZYME: NAPD_ECOLI P33938[U] (COG3062[P]) NapD protein. ENZYME: NAPB_ECOLI P33933[B] (COG3043[C]) Diheme cytochrome c napB precursor. ENZYME: FRDC_ECOLI P03805[B] (COG3029[C]) Fumarate reductase 15 kDa hydrophobic protein. ENZYME: ASTE_ECOLI P76215[GL] (COG2988[E]) Succinylglutamate desuccinylase (EC 3.1.-.-). P75904[U]+(NOG16876[S]) Hypothetical protein ycdP. P77354[U]+(NOG16797[S]) Hypothetical protein yafU. P09162[U]+(NOG15932[S]) Hypothetical protein yjaA. P75917[U]+(NOG14883[S]) Hypothetical protein ymdA precursor. P75972[U]+(NOG14881[S]) Hypothetical protein ymfI. P28721[U]+(NOG14587[S]) Protein gltF precursor. P45422[U]+(NOG14587[S]) Hypothetical protein yhcF precursor. P43667[U]+(NOG14431[S]) Hypothetical protein ygaH. P76153[U]+(NOG14300[S]) Hypothetical protein ydfZ. P52092[U]+(NOG14120[S]) Hypothetical protein yecJ. P56614[U]+(NOG14032[S]) Hypothetical protein ymdF. Q9S4X0[U]+(NOG13652[S]) Hypothetical 16.0 kDa protein (YffA protein). Q46932[U]+(NOG13293[S]) Hypothetical lipoprotein ygdR precursor. P27239[U]+(NOG12847[S]) Hypothetical protein yfeC. Q47274[D]+(NOG12550[S]) Antitermination protein Q homolog from lambdoid prophage DLP12. P37056[U]+(NOG12430[S]) Hypothetical lipoprotein yaeF precursor. P77656[U]+(NOG11952[S]) Hypothetical protein yfdK. P33554[U]+(NOG11902[S]) Prepilin peptidase dependent protein A precursor. P52143[U]+(NOG11530[S]) Hypothetical outer membrane protein ypjA. P42603[U]+(NOG11527[S]) Hypothetical protein ygjV. P39165[U]+(NOG10346[S]) Hypothetical protein ychO. P77768[U]+(NOG10200[S]) Hypothetical protein yfcI. P37014[U]+(NOG10200[S]) Hypothetical protein yfaD. Q57154[CJ]+(NOG10050[S]) RepFIB replication protein A. P39284[U]+(NOG09924[S]) Hypothetical protein yjeO. P76571[U]+(NOG09919[S]) Hypothetical protein yfgG. P39166[U]+(NOG09917[S]) Hypothetical lipoprotein yifL precursor. P76265[U]+(NOG09857[S]) Hypothetical protein yobF. P56100[U]+(NOG09856[S]) Protein ybgT. P52646[U]+(NOG09855[S]) Hypothetical protein ydbJ precursor. P23933[U]+(NOG09646[S]) Osmotically inducible lipoprotein E precursor (Activator of ntr-like gene). P45502[U]+(NOG09531[S]) Inhibitor of vertebrate lysozyme precursor. P76527[U]+(NOG09358[S]) Hypothetical protein ypeC precursor. P45807[U]+(NOG09349[S]) Hypothetical protein ybaM. P76075[U]+(NOG09348[S]) Hypothetical protein ynbE. P76172[U]+(NOG09347[S]) Hypothetical protein ynfD precursor. P76266[U]+(NOG09346[S]) Hypothetical protein yebO. P42615[U]+(NOG09345[S]) Hypothetical protein yqjB. P31461[U]+(NOG09342[S]) Hypothetical protein yidX. P75748[U]+(NOG09339[S]) Hypothetical protein ybgO precursor. P55914[U]+(NOG08927[S]) Hypothetical protein yjjZ. P45795[U]+(NOG08924[S]) Hypothetical protein yrdB. P46119[U]+(NOG08920[S]) Hypothetical protein ybjC. P39318[U]+(NOG08919[S]) Hypothetical protein ytfK. P76538[U]+(NOG08916[S]) Hypothetical protein yfeZ. P45752[U]+(NOG08910[S]) Hypothetical protein yrfC. P37615[U]+(NOG08909[S]) Hypothetical protein yhhM. P08370[U]+(NOG08908[S]) Hypothetical protein ygdB precursor. P76474[U]+(NOG08907[S]) Hypothetical protein yfbJ. P46143[U]+(NOG08903[S]) Hypothetical protein yggN. P45753[U]+(NOG08901[S]) Hypothetical protein yrfD. P39372[U]+(NOG08899[S]) Hypothetical protein yjhA precursor. P76372[AHO]+(NOG08895[S]) Chain length determinant protein (Polysaccharide antigen chain regulator). P26610[U]+(NOG08789[S]) Flagellar protein fliT. Q9S4X1[U]+(NOG08320[S]) Hypothetical 8.6 kDa protein (YfeB protein). P28224[U]+(NOG08301[S]) Hypothetical protein ydhA. P52099[U]+(NOG08270[S]) Hypothetical protein yaeP. P46845[U]+(NOG08269[S]) Hypothetical protein yhgG. P46132[U]+(NOG08268[S]) Protein yciN. P23854[U]+(NOG08153[S]) Phage shock protein B. Q9JMR3[U]+(NOG08116[S]) YfjA protein. P08867[J]+(NOG08115[S]) SopB protein (Plasmid partition protein B). P46141[U]+(NOG07955[S]) Hypothetical protein ygbE. P41038[U]+(NOG07954[S]) Hypothetical protein ybiJ precursor. P77225[U]+(NOG07953[S]) Protein ydhR precursor. P46120[U]+(NOG07952[S]) Hypothetical protein yecF. Q47710[U]+(NOG07951[S]) Hypothetical protein yqjK. P27295[U]+(NOG07949[S]) Phosphate starvation-inducible protein psiF precursor. P32696[U]+(NOG07948[S]) Hypothetical protein yjbO. P23862[CJ]+(NOG07947[S]) Primosomal replication protein N". P37613[U]+(NOG07946[S]) Hypothetical protein yhhK. P42616[U]+(NOG07945[S]) Protein yqjC precursor. P39180[U]+(NOG07942[S]) Antigen 43 precursor (AG43) (Fluffing protein). Q47377[U]+(NOG07598[S]) Hypothetical protein yfbW. P37343[U]+(NOG07597[S]) Protein ybgE. P76227[U]+(NOG07596[S]) Hypothetical protein ynjH precursor. P28913[U]+(NOG07595[S]) Hypothetical protein ybfA precursor. P76575[U]+(NOG07594[S]) Hypothetical protein yfgJ. P37614[U]+(NOG07592[S]) Hypothetical protein yhhL. P39297[U]+(NOG07590[S]) Hypothetical lipoprotein yjfO precursor. P76076[U]+(NOG07589[S]) Hypothetical protein ydbL precursor. P31454[U]+(NOG07588[S]) Hypothetical protein yidQ precursor. P45566[U]+(NOG07585[S]) Hypothetical protein yhdT. P76274[U]+(NOG07584[S]) Hypothetical protein yebV. P46477[U]+(NOG07583[S]) Hypothetical protein yhcN precursor. P08371[U]+(NOG07582[S]) Prepilin peptidase dependent protein B precursor. P75816[U]+(NOG07581[S]) Hypothetical protein ybjO. P31439[U]+(NOG07580[S]) Hypothetical protein yicN. P10409[U]+(NOG07579[S]) Secretion monitor precursor. P76597[U]+(NOG07575[S]) Hypothetical protein yfiR precursor. P75946[U]+(NOG07574[S]) Hypothetical protein ycfL. P77523[U]+(NOG07573[S]) Hypothetical protein ylaC. P33219[U]+(NOG07572[S]) Hypothetical lipoprotein yebF precursor. P28689[CJ]+(NOG07507[S]) DNA polymerase III, theta subunit (EC 2.7.7.7). P76297[U]+(NOG07490[S]) Flagellar protein flhE precursor. P52084[U]+(NOG07472[S]) ElaB protein. P40678[U]+(NOG07470[S]) DsrB protein. Q47143[CK]+(NOG07468[S]) DNA-damage-inducible protein I. P13959[DJ]+(NOG07459[S]) Replication regulatory protein repA2 (copB protein). P31807[U]+(NOG07249[S]) Hypothetical protein ychH. P75735[D]+(NOG07229[S]) Hypothetical protein ybfE. P36564[U]+(NOG07228[S]) Hypothetical protein yibL. P42618[U]+(NOG07226[S]) Hypothetical protein yqjE. P76496[U]+(NOG07225[S]) Hypothetical protein yfcL. P42617[U]+(NOG07224[S]) Hypothetical protein yqjD. Q9S4W9[U]+(NOG07074[S]) Hypothetical 28.8 kDa protein (YffB protein). P02937[U]+(NOG07029[S]) Major outer membrane lipoprotein precursor (Murein-lipoprotein). P46126[U]+(NOG06954[S]) Hypothetical protein yfiM. P77614[U]+(NOG06951[S]) Hypothetical protein yciS. P33917[U]+(NOG06950[S]) Hypothetical protein yejG. P45471[U]+(NOG06948[S]) Hypothetical protein yhbP. Q46824[U]+(NOG06947[S]) Hypothetical protein ygfX. P18390[U]+(NOG06946[S]) Hypothetical protein yjjA precursor (Protein P-18). P76180[U]+(NOG06945[S]) Hypothetical protein ydgK. P39278[U]+(NOG06944[S]) Hypothetical protein yjeI precursor. P52098[U]+(NOG06700[S]) Rof protein. P76277[U]+(NOG06699[S]) Hypothetical protein yebY precursor. P75818[U]+(NOG06697[S]) Putative lipoprotein ybjP precursor. P36931[U]+(NOG06695[S]) Hypothetical protein ygaC. P76035[U]+(NOG06691[S]) Hypothetical protein yciW. P39405[U]+(NOG06689[S]) Ferric iron reductase protein fhuF. P00192[B]+(NOG06618[S]) Soluble cytochrome b562 precursor (Cytochrome b-562). P08846[CJK]+(NOG06463[S]) Cell division inhibitor. P37611[U]+(NOG06453[S]) Hypothetical protein ybaJ. P75875[U]+(NOG06452[S]) Hypothetical protein yccV. P23838[U]+(NOG06282[S]) Hypothetical protein yacC precursor. P24251[D]+(NOG06281[S]) Curlin genes transcriptional activatory protein. P28633[U]+(NOG06280[S]) Protein rcsF. P76626[U]+(NOG06073[S]) Hypothetical protein ygaW. P77460[U]+(NOG06072[S]) Hypothetical protein ybcY precursor. P27308[U]+(NOG06069[S]) Hypothetical protein yijD. P32681[U]+(NOG06067[S]) Hypothetical protein yjaH. P37001[U]+(NOG06065[S]) CrcA protein. P37328[U]+(NOG06064[S]) Hypothetical protein yfhG. P39338[U]+(NOG06062[S]) Hypothetical protein yjgN. P52627[C]+(NOG06028[S]) FliZ protein. P19678[U]+(NOG05887[S]) Hypothetical protein yajD. P37048[U]+(NOG05878[S]) Hypothetical protein yaeH. P37632[U]+(NOG05876[S]) Universal stress protein B. P37620[U]+(NOG05763[S]) DcrB protein precursor. P76289[U]+(NOG05762[S]) Hypothetical protein yecN. P43526[U]+(NOG05761[S]) Syd protein. P32160[U]+(NOG05579[S]) Hypothetical protein yiiQ precursor. P23827[U]+(NOG05578[S]) Ecotin precursor. P75862[U]+(NOG05576[S]) Hypothetical protein ycbW. P75815[U]+(NOG05575[S]) Hypothetical protein ybjN. P76537[U]+(NOG05572[S]) Hypothetical protein yfeY precursor. P31143[U]+(NOG05570[S]) Protein sseB. P76471[U]+(NOG05569[S]) Hypothetical protein yfaZ precursor. P37667[U]+(NOG05460[S]) Hypothetical protein yiaF. P36546[U]+(NOG05427[S]) Outer membrane protein X precursor. P76208[U]+(NOG05369[S]) Hypothetical protein yniB. P36563[D]+(NOG05368[S]) Mannitol operon repressor (Mannitol repressor protein). P15286[U]+(NOG05366[S]) DIV protein. P26266[AHIO]+(NOG05365[S]) Ferric enterobactin transport protein fepE. P46129[U]+(NOG05229[S]) Hypothetical protein ybeL. P09995[U]+(NOG05228[S]) Putative lipoprotein yceB precursor. P21365[U]+(NOG05225[S]) Hypothetical protein yciC. P37616[U]+(NOG05121[S]) Hypothetical protein yhhN. P33365[U]+(NOG04840[S]) Hypothetical protein yohC. P36680[U]+(NOG04839[S]) Hypothetical protein yacF. P24195[U]+(NOG04838[S]) Hypothetical protein ygiB. P37681[U]+(NOG04837[S]) Putative outer membrane protein yiaT precursor. P77486[U]+(NOG04837[S]) MltA-interacting protein precursor. P37307[AO]+(NOG04835[S]) Probable phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase) (PRK). P36671[U]+(NOG04371[S]) Hypothetical lipoprotein yajG precursor. P18838[U]+(NOG04369[S]) Protein smp precursor. P77301[U]+(NOG04368[S]) Hypothetical protein ybaP. P76472[A]+(NOG04367[S]) Hypothetical protein yfbH. P16525[CJ]+(NOG04366[S]) DNA replication terminus site-binding protein (Ter protein) (Ter binding protein). P75845[U]+(NOG04364[S]) Hypothetical protein ycbJ. P13017[U]+(NOG04363[S]) AmpE protein. P14007[U]+(NOG04361[S]) Penicillin-insensitive murein endopeptidase precursor (EC 3.4.99.-) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase). P25741[AHO]+(NOG04360[S]) Lipopolysaccharide core biosynthesis protein rfaP. P76177[U]+(NOG04359[S]) Protein ydgH precursor. P45525[U]+(NOG04355[S]) Hypothetical protein ycjF. P03841[I]+(NOG04354[S]) Maltose operon periplasmic protein precursor. P45564[U]+(NOG04353[S]) Hypothetical protein yfeN. P54901[D]+(NOG04351[S]) Stationary phase inducible protein csiE. P02943[IK]+(NOG04350[S]) Maltoporin precursor (Maltose-inducible porin) (Lambda receptor protein). P77804[U]+(NOG04349[S]) Hypothetical protein ydgA. P52645[U]+(NOG04348[S]) Hypothetical protein ydbH. P31433[U]+(NOG04347[S]) Hypothetical protein yicH. P08369[U]+(NOG04343[S]) Inner membrane protein creD. P56258[U]+(NOG04342[S]) 4-alpha-L-fucosyltransferase (EC 2.4.1.-) (TDP-Fuc4NAc:lipid II Fuc4NAc transferase) (Fuc4NAc transferase). P25905[AHO]+(NOG04337[S]) Lipopolysaccharide biosynthesis protein wzzE. P75791[U]+(NOG04336[S]) Hypothetical protein ybiU. P45800[U]+(NOG04290[S]) Putative membrane protein igaA homolog. P11165[D]+(NOG04256[S]) Flagellar transcriptional activator flhC. P32162[U]+(COG3691[S]) Hypothetical protein yiiS. P76504[U]+(COG3691[S]) Hypothetical protein yfcZ. P39270[U]+(COG3647[S]) Hypothetical protein yjdF. P42602[I]+(COG3633[E]) Hypothetical symporter ygjU. P37177[IL]+(COG3605[T]) Phosphoenolpyruvate-protein phosphotransferase ptsP (EC 2.7.3.9) (Phosphotransferase system, enzyme I) (Enzyme I-Ntr). P56604[U]+(COG3530[S]) Hypothetical protein ypeB. P56622[U]+(COG3529[R]) Hypothetical protein yheV. P33633[L]+(COG3445[R]) Protein yfiD. P21167[U]+(COG3317[M]) Lipoprotein-34 precursor. P07604[DLN]+(COG3283[K]) Transcriptional regulatory protein tyrR. P37669[U]+(COG3274[S]) Hypothetical protein yiaH. P24252[U]+(COG3272[S]) Hypothetical protein ybgA (TKP) (ORF169). P11557[U]+(COG3266[S]) DamX protein. P22786[K]+(COG3248[M]) Nucleoside-specific channel-forming protein tsx precursor. P06996[IK]+(COG3203[M]) Outer membrane protein C precursor (Porin ompC) (Outer membrane protein 1B). P02931[IK]+(COG3203[M]) Outer membrane protein F precursor (Porin ompF) (Outer membrane protein 1A) (Outer membrane protein IA) (Outer membrane protein B). P76335[I]+(COG3203[M]) Potential outer membrane protein yedS precursor. P77519[I]+(COG3203[M]) From BASES 1540626 to 1550846 (Section 134 of 400) of the complete genome (Section 134 of 400). P77747[I]+(COG3203[M]) Outer membrane protein N precursor (Porin ompN). P21420[I]+(COG3203[M]) Outer membrane porin protein nmpC precursor. P02932[I]+(COG3203[M]) Outer membrane pore protein E precursor. P31690[D]+(COG3160[K]) Regulator of sigma D. P46855[U]+(COG3157[R]) Hypothetical protein yhhZ. P26428[HO]+(COG3155[S]) Enhancing lycopene biosynthesis protein 2 (Sigma cross-reacting protein 27A) (SCRP-27A). P45474[U]+(COG3154[I]) Hypothetical protein yhbT. P36652[U]+(COG3151[S]) Hypothetical protein yqiB. P09549[U]+(COG3147[S]) DedD protein. P33220[U]+(COG3141[S]) Hypothetical protein yebG. P76260[U]+(COG3140[S]) Hypothetical protein yoaH. P76231[U]+(COG3139[S]) Hypothetical protein yeaC. P76206[U]+(COG3137[M]) Hypothetical protein ydiY precursor. P52110[U]+(COG3136[R]) Hypothetical protein ydgC. P37796[U]+(COG3134[S]) Hypothetical protein ycfJ. P55741[U]+(COG3133[M]) Outer membrane lipoprotein slyB precursor. P29217[U]+(COG3132[S]) Hypothetical protein yceH (G20.3). P22986[K]+(COG3130[J]) Ribosome modulation factor (Protein E). P77717[U]+(COG3126[S]) Hypothetical protein ybaY precursor. P21515[NO]+(COG3124[S]) Hypothetical protein yajB. P51024[U]+(COG3122[S]) Hypothetical protein yaiL. P45569[U]+(COG3120[S]) Hypothetical protein ycbG. P77173[J]+(COG3115[D]) Cell division protein zipA. P36770[EI]+(COG3114[N]) Heme exporter protein D (Cytochrome c-type biogenesis protein ccmD). P45389[U]+(COG3113[R]) Hypothetical protein yrbB. P45567[U]+(COG3112[S]) Hypothetical protein yacL. P52083[U]+(COG3111[S]) Protein ygiW precursor. P31130[U]+(COG3111[S]) Hypothetical protein ydeI precursor. P75873[U]+(COG3110[S]) Hypothetical protein yccT precursor. P45577[U]+(COG3109[T]) ProP effector. P75848[U]+(COG3108[S]) Hypothetical protein ycbK. P45464[U]+(COG3107[R]) Hypothetical protein yraM. P76046[U]+(COG3106[R]) Hypothetical protein ycjX. P39436[U]+(COG3105[S]) Hypothetical protein yhcB. P39202[U]+(COG3103[T]) Hypothetical protein ygiM precursor. P52007[U]+(COG3102[S]) Protein yecM. P76938[U]+(COG3101[S]) Hypothetical protein yfcM. P76003[U]+(COG3100[S]) Protein ycgL. P76028[U]+(COG3099[S]) Hypothetical protein yciU. Q46919[U]+(COG3098[S]) Hypothetical protein yqcC. Q46828[U]+(COG3097[S]) Hypothetical protein yqfB. P22523[U]+(COG3096[D]) Cell division protein mukB. P22524[U]+(COG3095[D]) MukE protein (kicA protein). Q46755[U]+(COG3094[S]) Protein sirB2. P77496[U]+(COG3092[S]) Hypothetical protein yfbV. P39902[U]+(COG3091[S]) Protein sprT. P45536[U]+(COG3089[S]) Hypothetical protein yheU. P46187[U]+(COG3086[T]) Sigma-E factor regulatory protein rseC. P27827[U]+(COG3085[S]) Protein yifE. P32126[U]+(COG3084[S]) Protein yihD. P33922[L]+(COG3083[R]) Hypothetical protein yejM. P33921[U]+(COG3082[S]) Hypothetical protein yejL. P33920[U]+(COG3081[R]) 37 kDa nucleoid-associated protein. P25533[U]+(COG3079[S]) Hypothetical protein ygfB. P32130[U]+(COG3078[S]) Hypothetical protein yihI. P37163[U]+(COG3076[S]) Hypothetical protein yjgD. P32164[U]+(COG3074[S]) Hypothetical protein yiiU. P38106[U]+(COG3073[T]) Sigma-E factor negative regulatory protein. P00936[O]+(COG3072[F]) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase). P45428[I]+(COG3069[C]) Putative cryptic C4-dicarboxylate transporter dcuD. Q47134[I]+(COG3069[C]) Anaerobic C4-dicarboxylate transporter dcuC. P32680[U]+(COG3068[S]) Hypothetical protein yjaG. P27377[I]+(COG3067[P]) Na(+)/H(+) antiporter 2 (Sodium/proton antiporter 2). P06722[C]+(COG3066[L]) DNA mismatch repair protein mutH. P76255[U]+(COG3065[M]) Hypothetical lipoprotein yeaY precursor. P37194[U]+(COG3065[M]) Outer membrane protein slp precursor. P39310[U]+(COG3061[M]) Hypothetical protein ytfB. P08338[DGM]+(COG3060[K] [E]) Met repressor (Met regulon regulatory protein metJ). P36658[CJ]+(COG3057[L]) SeqA protein. P39187[U]+(COG3054[R]) Protein ytfJ precursor. P28632[CJ]+(COG3050[L]) DNA polymerase III, psi subunit (EC 2.7.7.7). P46186[U]+(COG3026[T]) Sigma-E factor regulatory protein rseB precursor. P40710[U]+(COG3015[P] [M]) Copper homeostasis protein cutF precursor (Lipoprotein nlpE). P36567[U]+(COG3006[D]) MukF protein (Killing factor kicB). P43670[U]+(COG2995[S]) Paraquat-inducible protein A. P76271[U]+(COG2995[S]) Hypothetical protein yebS. P75829[U]+(COG2990[S]) Hypothetical protein ybjX. P22525[A]+(COG2989[S]) Hypothetical protein ycbB. P76005[U]+(COG2983[S]) Hypothetical protein ycgN. P12610[GIM]+(COG2981[E]) CysZ protein. P03032[D]+(COG2973[K]) Trp operon repressor. P07013[CJ]+(COG2965[L]) Primosomal replication protein N. P42598[U]+(COG2949[S]) Hypothetical protein ygjQ. P33017[U]+(COG2949[S]) SanA protein. P00482[HL]+(COG2937[I]) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT). P32066[U]+(COG2933[R]) Hypothetical protein ygdE. P76367[U]+(COG2926[S]) Hypothetical protein yeeX. P30853[U]+(COG2922[S]) Protein smg. P45572[U]+(COG2920[P]) Hypothetical protein yccK. P30017[D]+(COG2916[R]) DNA-binding protein stpA (H-NS homolog stpA). P08936[D]+(COG2916[R]) DNA-binding protein H-NS (Histone-like protein HLP-II) (Protein H1) (Protein B1). P25746[U]+(COG2915[R]) Hypothetical protein ycfC (ORF-23). P04539[I]+(COG2704[R]) Anaerobic C4-dicarboxylate transporter dcuA. P14409[I]+(COG2704[R]) Anaerobic C4-dicarboxylate transporter dcuB. P21189[CJK]+(COG0417[L]) DNA polymerase II (EC 2.7.7.7) (Pol II). [cluster '1' has 19 of 318 proteins with EC-number annotated.] Cluster '3' (COG majority vote 'mixed', protein majority vote 'mix', 123 proteins in cluster) TCA ANARESP1-PWY GLYOXYLATE-BYPASS UBISYN-PWY TREDEGLOW-PWY DAPLYSINESYN-PWY UBISYN-PWY KDOSYN-PWY NAGLIPASYN-PWY KDOSYN-PWY NAGLIPASYN-PWY LEUSYN-PWY PHESYN TYRSYN PYRIDOXSYN-PWY NAGLIPASYN-PWY KDOSYN-PWY ENTNER-DOUDOROFF-PWY NAGLIPASYN-PWY KDOSYN-PWY UBISYN-PWY ANARESP1-PWY PYRUVDEHYD-PWY GLYCOLYSIS/TCA/GLYOX-BYPASS GLYOXDEG-PWY ENZYME: DAPE_ECOLI P24176[EGMN] (NOG21034[S]) Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) (SDAP). ENZYME: UBIH_ECOLI P25534[BLO] (NOG21030[S]) 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-). ENZYME: EDD_ECOLI P25530[L] (NOG21018[S]) Phosphogluconate dehydratase (EC 4.2.1.12) (6-phosphogluconate dehydratase). ENZYME: TYRB_ECOLI P04693[GMO] (NOG21005[S]) Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (AROAT) (ARAT). ENZYME: UBIC_ECOLI P26602[O] (COG3161[H]) Chorismate--pyruvate lyase (EC 4.-.-.-). ENZYME: LPXH_ECOLI P43341[AHO] (COG2908[S]) UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-). ENZYME: KDSA_ECOLI P17579[AHO] (COG2877[M]) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16) (Phospho-2- dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase). ENZYME: ODP1_ECOLI P06958[AN] (COG2609[C]) Pyruvate dehydrogenase E1 component (EC 1.2.4.1). ENZYME: UBIG_ECOLI P17993[O] (COG2227[H]) 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) (3,4- dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase). ENZYME: LPXK_ECOLI P27300[AHO] (COG1663[N]) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A 4'-kinase). ENZYME: KDTA_ECOLI P23282[AHO] (COG1519[M]) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) (KDO transferase). ENZYME: KDSB_ECOLI P04951[AHO] (COG1212[M]) 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) (CMP-KDO synthetase) (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS). ENZYME: ACO2_ECOLI P36683[U] (COG1049[C]) Aconitate hydratase 2 (EC 4.2.1.3) (Citrate hydro-lyase 2) (Aconitase 2). ENZYME: PDXJ_ECOLI P24223[O] (COG0854[H]) Pyridoxal phosphate biosynthetic protein pdxJ (PNP synthase). ENZYME: GLK_ECOLI P46880[AN] (COG0837[G]) Glucokinase (EC 2.7.1.2) (Glucose kinase). P75728[BLO]*(NOG21030[S]) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-). P25535[BL]*(NOG21030[S]) Protein visC (EC 1.-.-.-). P77596[L]*(NOG21018[S]) Hypothetical protein yagF. P39358[L]*(NOG21018[S]) Hypothetical protein yjhG. P58039[U]+(NOG07321[S]) Hypothetical protein yeiW. P76214[U]+(NOG07166[S]) Hypothetical protein ydjR. P52100[U]+(NOG05464[S]) Hypothetical protein yaeQ. P76097[U]+(NOG04126[S]) Hypothetical protein ydcJ. P11071[U]+(NOG04125[S]) Isocitrate dehydrogenase kinase/phosphatase (IDH kinase/phosphatase) (EC 2.7.1.116) (EC 3.1.3.-). P77754[U]+(COG3678[S]) Spheroplast protein Y precursor. P32158[U]+(COG3678[S]) Periplasmic protein cpxP precursor. P33997[D]+(COG3311[K]) Prophage CP4-57 regulatory protein alpA. P39289[U]+(COG3242[S]) Hypothetical protein yjeT. P76346[U]+(COG3228[S]) Hypothetical protein yeeI. P38521[U]+(COG3171[S]) Hypothetical protein yggL. P27852[U]+(COG3165[S]) Hypothetical protein yigP. P46474[U]+(COG3164[S]) Hypothetical protein yhdP. P46476[U]+(COG3164[S]) Hypothetical protein yhdR precursor. P23305[U]+(COG3159[S]) Hypothetical protein yigA. P45762[I]+(COG3156[N]) Probable general secretion pathway protein K. P75950[U]+(COG3150[R]) Hypothetical protein ycfP. P36653[U]+(COG3150[R]) Hypothetical protein yqiA. P07366[K]+(COG3143[N]) Chemotaxis protein cheZ. P40120[U]+(COG3131[P]) Protein ydcG precursor. P33136[U]+(COG3131[P]) Periplasmic glucans biosynthesis protein mdoG precursor. P77504[U]+(COG3127[S]) Hypothetical protein ybbP. P36768[U]+(COG3123[S]) Hypothetical protein yaiE. P77395[B]+(COG3118[O]) Hypothetical protein ybbN. P45397[U]+(COG3117[S]) Hypothetical protein yrbK. P22187[J]+(COG3116[D]) Cell division protein ftsL. P29131[J]+(COG3087[D]) Cell division protein ftsN. P09128[O]+(COG3071[H]) HemY protein. P21364[U]+(COG3047[M]) Outer membrane protein W precursor. P08367[U]+(COG3045[S]) CreA protein. P36675[U]+(COG3036[S]) Hypothetical protein yhdL. P26650[U]+(COG3028[S]) Hypothetical protein yjgA (X96 protein). P30871[U]+(COG3025[S]) Hypothetical protein ygiF (ORFXE). P36681[U]+(COG3024[S]) Hypothetical protein yacG. P75820[AN]+(COG3023[M]) Probable N-acetylmuramoyl-L-alanine amidase ybjR (EC 3.5.1.28). P13016[AN]+(COG3023[M]) AmpD protein. P24208[I]+(COG3017[M]) Outer-membrane lipoprotein lolB precursor. P75866[U]+(COG3009[S]) Hypothetical protein ymbA. P76272[U]+(COG3008[R]) Hypothetical protein yebT. P43671[U]+(COG3008[R]) Paraquat-inducible protein B. P39811[B]+(COG2999[O]) Glutaredoxin 2 (Grx2). P37645[U]+(COG2982[M]) Hypothetical protein yhjG. P28249[U]+(COG2982[M]) Protein asmA precursor. P10101[U]+(COG2980[M]) Rare lipoprotein B precursor. P33218[U]+(COG2979[S]) Hypothetical protein yebE. P76576[U]+(COG2976[S]) Hypothetical protein yfgM. P37096[U]+(COG2975[S]) Hypothetical protein yfhJ. P36767[C]+(COG2974[L]) Recombination associated protein rdgC. P25663[U]+(COG2969[R]) Stringent starvation protein B. P37634[U]+(COG2961[R]) Hypothetical protein yhiR. Q46868[U]+(COG2960[S]) Hypothetical protein yqiC. P09127[O]+(COG2959[S]) Putative uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (ORF X). P45576[U]+(COG2956[G]) Hypothetical protein yciM precursor. P41052[A]+(COG2951[M]) Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) (Murein hydrolase B) (35 kDa soluble lytic transglycosylase) (Slt35). P33137[U]+(COG2943[M]) Periplasmic glucans biosynthesis protein mdoH. Q46825[U]+(COG2938[S]) Hypothetical protein ygfY. P28905[CJ]+(COG2927[L]) DNA polymerase III, chi subunit (EC 2.7.7.7). P04995[C]+(COG2925[L]) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonuclease I) (DNA deoxyribophosphodiesterase) (dRPase). P52065[U]+(COG2924[S]) Protein yggX. P30977[U]+(COG2921[S]) Hypothetical protein ybeD. Q46894[J]+(COG2919[O]) Cell division protein ftsB. P21366[JK]+(COG2917[D]) Probable intracellular septation protein. P52119[U]+(COG2914[S]) Protein yfjF. P23089[U]+(COG2913[J]) Small protein A precursor. P39321[U]+(COG2911[S]) Hypothetical protein ytfN. P13655[B]+(COG2906[P]) Bacterioferritin-associated ferredoxin. P11028[D]+(COG2901[K] [L]) DNA-binding protein fis (Factor-for-inversion stimulation protein) (HIN recombinational enhancer binding protein). P30857[U]+(COG2900[S]) SlyX protein. P16927[U]+(COG2891[M]) Rod shape-determining protein mreD. P45390[U]+(COG2854[N]) Protein yrbC precursor. P76506[U]+(COG2853[M]) VacJ lipoprotein precursor. P27431[U]+(COG2850[S]) Hypothetical protein ycfD. P76053[CJ]+(COG2840[S]) Hypothetical protein ydaL. P77458[CJ]+(COG2840[S]) Hypothetical protein yfcN. P39178[I]+(COG2834[M]) Outer-membrane lipoproteins carrier protein precursor (P20). P27291[U]+(COG2823[R]) Osmotically inducible protein Y precursor. P45467[U]+(COG2823[R]) Hypothetical protein yraP precursor. P46885[A]+(COG2821[M]) Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) (Murein hydrolase A) (Mlt38). P77570[U]+(COG2377[S]) Hypothetical protein ydhH. P23885[EN]+(COG2360[O]) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.-). P27838[U]+(COG1965[P]) CyaY protein. P15040[EI]+(COG1952[N]) Protein-export protein secB. P39287[U]+(COG1949[F]) Oligoribonuclease (EC 3.1.-.-). P38685[U]+(COG1934[S]) Protein yhbN precursor. P45396[L]+(COG1778[R]) Hypothetical protein yrbI. P45955[U]+(COG1729[S]) Hypothetical protein ybgF precursor. P52049[U]+(COG1678[K]) Protein yqgE. P24187[AHO]+(COG1560[N]) Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) (Heat shock protein B). P76522[AHO]+(COG1560[N]) DDG protein. P24205[AHO]+(COG1560[N]) Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-). P45391[U]+(COG1463[R]) Hypothetical protein yrbD precursor. P31554[U]+(COG1452[M]) Organic solvent tolerance protein precursor. P30870[U]+(COG1391[O] [T]) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) (Glutamine- synthetase adenylyltransferase) (ATASE). P27850[C]+(COG1322[S]) DNA recombination protein rmuC. P08550[L]+(COG1286[R]) Colicin V production protein (dedE protein) (Pur regulon 18 kDa protein). Q46927[U]+(COG1179[H]) Hypothetical protein ygdL. P45393[I]+(COG1127[N]) Hypothetical ABC transporter ATP-binding protein yrbF. P02929[IK]+(COG0810[M]) TonB protein. P10100[U]+(COG0797[M]) Rare lipoprotein A precursor. Q46920[O]+(COG0780[R] COG2904[S]) Hypothetical protein yqcD. P45392[U]+(COG0767[R]) Hypothetical protein yrbE. P37010[U]+(COG0278[O]) Protein ydhD. P15298[D]+(COG0271[T]) BolA protein. P43781[U]+(COG0271[T]) Protein yrbA. [cluster '3' has 28 of 123 proteins with EC-number annotated.] Cluster '259' (COG majority vote 'metab', protein majority vote 'go_amino', 2 proteins in cluster) FERMENTATION-PWY KETOGLUCONMET-PWY ENZYME: LDHD_ECOLI P52643[GM] (COG1052[H] [R] [C]) D-lactate dehydrogenase (EC 1.1.1.28) (D-LDH) (Fermentative lactate dehydrogenase). ENZYME: TKRA_ECOLI P37666[AGM] (COG1052[H] [R] [C]) 2-ketogluconate reductase (EC 1.1.1.215) (2KR) (2-ketoaldonate reductase). [cluster '259' has 2 of 2 proteins with EC-number annotated.] Cluster '155' (COG majority vote 'mixed', protein majority vote 'go_amino', 2 proteins in cluster) SAM-PWY HOMOSER-METSYN-PWY ENZYME: METE_ECOLI P25665[GM] (COG0620[E]) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase). P75838[U]+(COG1944[S]) Hypothetical protein ycaO. [cluster '155' has 1 of 2 proteins with EC-number annotated.] Cluster '174' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 2 proteins in cluster) ARGDEG-PWY POLYAMSYN-PWY ENZYME: SPEB_ECOLI P16936[LO] (COG0010[E]) Agmatinase (EC 3.5.3.11) (Agmatine ureohydrolase) (AUH). P00631[HN]+(COG2829[M]) Phospholipase A1 precursor (EC 3.1.1.32) (Detergent-resistant phospholipase A) (DR-phospholipase A) (Phosphatidylcholine 1- acylhydrolase) (Outer membrane phospholipase A) (OM PLA) (OMPLA). [cluster '174' has 2 of 2 proteins with EC-number annotated.] Cluster '14' (COG majority vote 'metab', protein majority vote 'mix', 31 proteins in cluster) FAO-PWY PWY0-43 CARNMET2-PWY CARNMET-PWY ACETOACETATE-DEG-PWY BETSYN-PWY FAO-PWY ENZYME: BETA_ECOLI P17444[B] (COG2303[N]) Choline dehydrogenase (EC 1.1.99.1) (CHD). ENZYME: CAIB_ECOLI P31572[L] (COG1804[C]) Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-). ENZYME: FADB_ECOLI P21177[HL] (COG1024[I] COG1250[I]) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3- hydroxybutyryl-CoA epimerase (EC 5.1.2.3)]. ENZYME: YGFH_ECOLI P52043[A] (COG0427[C]) Hypothetical protein ygfH. ENZYME: THIK_ECOLI P21151[H] (COG0183[I]) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase). ENZYME: ATOB_ECOLI P76461[H] (COG0183[I]) Acetyl-CoA acetyltransferase (EC 2.3.1.9) (Acetoacetyl-CoA thiolase). P76078[U]+(COG3460[Q]) Phenylacetic acid degradation protein paaB. P76079[U]+(COG3396[S]) Phenylacetic acid degradation protein paaC. P76077[U]+(COG3396[S]) Phenylacetic acid degradation protein paaA. P76086[D]+(COG3327[K]) Phenylacetic acid degradation operon negative regulatory protein paaX. P76080[U]+(COG2151[R]) Phenylacetic acid degradation protein paaD. P75804[U]+(COG2133[G]) Hypothetical protein yliI precursor. P45578[D]+(COG1854[T]) Autoinducer-2 production protein luxS (EC 3.13.1.-) (AI-2 synthesis protein). P76518[L]*(COG1804[C]) Hypothetical protein yfdE. P77407[L]*(COG1804[C]) Hypothetical protein yfdW. P27254[I]+(COG1703[E]) LAO/AO transport system kinase (EC 2.7.-.-). P76085[L]+(COG1541[H]) Phenylacetate-coenzyme A ligase (EC 6.2.1.30) (Phenylacetyl-CoA ligase) (PA-CoA ligase). P76083[H]*(COG1250[I]) Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) (Beta- hydroxybutyryl-CoA dehydrogenase) (BHBD). P77399[HL]*(COG1024[I] COG1250[I]) Putative fatty oxidation complex alpha subunit [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)]. P75824[B]+(COG1018[C]) NADH oxidoreductase hcr (EC 1.-.-.-). P76081[B]+(COG1018[C]) Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-). P28861[B]+(COG1018[C]) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR) (Flavodoxin reductase) (FLXR) (FLDR) (Methyl viologen resistance protein A) (DA1). P76254[B]+(COG1018[C]) Putative dioxygenase beta subunit yeaX (EC 1.-.-.-). P24232[BI]+(COG1017[C] COG1018[C]) Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Dihydropteridine reductase) (EC 1.6.99.7) (Ferrisiderophore reductase B) (Nitric oxide dioxygenase) (EC 1.14.12.17) (NOD). P77181[U]+(COG0663[R]) Phenylacetic acid degradation protein paaY. P39206[U]+(COG0663[R]) Carnitine operon protein caiE. P45770[U]+(COG0663[R]) Protein yrdA. P76503[U]*(COG0183[I]) Probable 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Acetyl-CoA acyltransferase) (Beta-ketothiolase). Q46939[U]*(COG0183[I]) Probable acetyl-CoA acetyltransferase (EC 2.3.1.9) (Acetoacetyl-CoA thiolase). P77525[U]*(COG0183[I]) Probable beta-ketoadipyl CoA thiolase (EC 2.3.1.-). Q47147[L]+(COG0121[R]) Hypothetical protein yafJ. [cluster '14' has 18 of 31 proteins with EC-number annotated.] Cluster '15' (COG majority vote 'mixed', protein majority vote 'mix', 20 proteins in cluster) GLYCEROLMETAB-PWY HCAMHPDEG-PWY GLYCEROLMETAB-PWY AERESPDON-PWY ANARESPDON-PWY TCA ENZYME: MQO_ECOLI P33940[U] (COG0579[R]) Malate:quinone oxidoreductase (EC 1.1.99.16) (Malate dehydrogenase [acceptor]) (MQO). ENZYME: GLPD_ECOLI P13035[ABHLN] (COG0578[C]) Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.99.5). ENZYME: GLPK_ECOLI P08859[AHLN] (COG0554[C]) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol 3-phosphotransferase) (Glycerokinase) (GK). ENZYME: HCAD_ECOLI P77650[BLN] (COG0446[R]) 3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component (EC 1.18.1.3) (Digoxigenin system ferredoxin--NAD(+) reductase component). P76014[AHLN]+(COG2376[G]) Protein ycgS. P76015[AHLN]+(COG2376[G]) Hypothetical protein ycgT. P03960[L]+(COG2216[P]) Potassium-transporting ATPase B chain (EC 3.6.3.12) (Potassium- translocating ATPase B chain) (ATP phosphohydrolase [potassium- transporting] B chain) (Potassium binding and translocating subunit B). P77790[EN]+(COG2173[M]) D-alanyl-D-alanine dipeptidase (EC 3.4.13.-) (D-Ala-D-Ala dipeptidase). P03961[I]+(COG2156[P]) Potassium-transporting ATPase C chain (EC 3.6.3.12) (Potassium- translocating ATPase C chain) (ATP phosphohydrolase [potassium- transporting] C chain) (Potassium binding and translocating subunit C). P03959[I]+(COG2060[P]) Potassium-transporting ATPase A chain (EC 3.6.3.12) (Potassium- translocating ATPase A chain) (ATP phosphohydrolase [potassium- transporting] A chain) (Potassium binding and translocating subunit A). Q46906[U]+(COG1954[K]) Hypothetical protein ygcP. P75874[U]+(COG1832[R]) Protein yccU. P37349[IL]+(COG1080[G] COG1925[G] COG3412[S]) Hypothetical protein ycgC. P21865[U]+(COG0642[T] COG2205[T]) Sensor protein kdpD (EC 2.7.3.-). P48838[I]+(COG0580[G]) Aquaporin Z (Bacterial nodulin-like intrinsic protein). P11244[AHILN]+(COG0580[G]) Glycerol uptake facilitator protein (Aquaglyceroporin). P37339[B]*(COG0579[R]) Hypothetical protein ygaF. P42593[B]*(COG0446[R] COG1902[C]) 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) (2,4-dienoyl coenzyme A reductase). P37596[BI]*(COG0446[R]) FlRd-NAD(+) reductase (EC 1.18.1.-) (Flavorubredoxin reductase) (FlRd- reductase). P75770[U]+(COG0392[R]) Hypothetical protein ybhN. [cluster '15' has 11 of 20 proteins with EC-number annotated.] Cluster '67' (COG majority vote 'metab', protein majority vote 'mix', 6 proteins in cluster) GLUCONSUPER-PWY NONOXIPENT-PWY RIBOKIN-PWY PYRIDOXSYN-PWY SERSYN-PWY ENZYME: RPIA_ECOLI P27252[AN] (COG0120[G]) Ribose 5-phosphate isomerase A (EC 5.3.1.6) (Phosphoriboisomerase A). ENZYME: SERA_ECOLI P08328[GLM] (COG0111[E]) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH). ENZYME: PDXB_ECOLI P05459[GMO] (COG0111[E]) Erythronate-4-phosphate dehydrogenase (EC 1.1.1.-). P75916[U]+(NOG05577[S]) Hypothetical protein ycdZ. P27278[DIO]+(COG1056[H] COG1396[K] COG3172[H]) Transcriptional regulator nadR. P75913[GM]*(COG0111[E]) Putative 2-hydroxyacid dehydrogenase ycdW. [cluster '67' has 3 of 6 proteins with EC-number annotated.] Cluster '169' (COG majority vote 'metab', protein majority vote 'go_amino', 6 proteins in cluster) ARGSYN-PWY ARGSYN-PWY ENZYME: OTC1_ECOLI P04391[GLM] (COG0078[E]) Ornithine carbamoyltransferase chain I (EC 2.1.3.3) (OTCase-1). ENZYME: OTC2_ECOLI P06960[GLM] (COG0078[E]) Ornithine carbamoyltransferase chain F (EC 2.1.3.3) (OTCase-2). P37306[GLM]+(COG0549[E]) Carbamate kinase (EC 2.7.2.2). Q46807[GLM]+(COG0549[E]) Carbamate kinase-like protein yqeA. P77624[GLM]+(COG0549[E]) Carbamate kinase-like protein yahI. Q46803[G]*(COG0078[E]) Hypothetical protein ygeW. [cluster '169' has 3 of 6 proteins with EC-number annotated.] Cluster '128' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 5 proteins in cluster) HCAMHPDEG-PWY HCAMHPDEG-PWY ANARESPACC-PWY ENZYME: HCAC_ECOLI P77266[BLN] (COG2146[P] [R]) 3-phenylpropionate dioxygenase ferredoxin subunit (Digoxigenin ferredoxin subunit). ENZYME: NIRD_ECOLI P23675[L] (COG2146[P] [R]) Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4). ENZYME: HCAE_ECOLI Q47139[BLN] (COG2146[P] [R]) 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-) (Digoxigenin alpha subunit). P56605[U]+(NOG07981[S]) Hypothetical protein yoeB. P76253[BL]*(COG2146[P] [R]) Putative dioxygenase alpha subunit yeaW (EC 1.14.1.-). [cluster '128' has 3 of 5 proteins with EC-number annotated.] Cluster '94' (COG majority vote 'metab', protein majority vote 'go_metab_others', 3 proteins in cluster) PYRNUCYC-PWY ENZYME: PNCB_ECOLI P18133[O] (COG1488[H]) Nicotinate phosphoribosyltransferase (EC 2.4.2.11) (NAPRTase). P37652[AO]+(NOG04187[S]) Cyclic di-GMP binding protein precursor (Cellulose synthase regulatory subunit). P37651[AN]+(COG3405[G]) Endoglucanase precursor (EC 3.2.1.4) (Endo-1,4-beta-glucanase) (Cellulase) (Carboxymethylcellulase) (CMCase). [cluster '94' has 2 of 3 proteins with EC-number annotated.] Cluster '69' (COG majority vote 'unknown', protein majority vote 'mix', 4 proteins in cluster) THREOCAT-PWY THREOCAT-PWY ENZYME: TDH_ECOLI P07913[GN] (NOG21031[S]) Threonine 3-dehydrogenase (EC 1.1.1.103). ENZYME: KBL_ECOLI P07912[GO] (NOG21023[S]) 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (AKB ligase) (Glycine acetyltransferase). P18032[U]+(NOG19643[S]) ArtA protein. P25666[AHO]+(NOG16076[S]) HtrL protein. [cluster '69' has 2 of 4 proteins with EC-number annotated.] Cluster '242' (COG majority vote 'metab', protein majority vote 'go_metab_others', 4 proteins in cluster) PYRNUCYC-PWY ENZYME: PNCA_ECOLI P21369[LO] (COG1335[Q]) Pyrazinamidase/nicotinamidase [Includes: Pyrazinamidase (EC 3.5.1.-) (PZAase); Nicotinamidase (EC 3.5.1.19) (Nicotine deamidase)]. P37347[L]*(COG1335[Q]) Hypothetical isochorismatase family protein yecD. P75897[L]*(COG1335[Q]) Hypothetical isochorismatase family protein ycdL. P21367[L]*(COG1335[Q]) Protein ycaC. [cluster '242' has 1 of 4 proteins with EC-number annotated.] Cluster '116' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 4 proteins in cluster) PYRIDNUCSYN-PWY PYRNUCYC-PWY ENZYME: NADE_ECOLI P18843[O] (COG0171[H]) NH(3)-dependent NAD(+) synthetase (EC 6.3.5.1) (Nitrogen-regulatory protein). P25736[U]+(COG2356[L]) Endonuclease I precursor (EC 3.1.21.1) (Endo I). P39874[L]+(COG0388[R]) Hypothetical protein ybeM. Q47679[L]+(COG0388[R]) Hypothetical protein yafV. [cluster '116' has 2 of 4 proteins with EC-number annotated.] Cluster '13' (COG majority vote 'unknown', protein majority vote 'mix', 19 proteins in cluster) GLUCOSE1PMETAB-PWY ANARESPACC-PWY ANARESPACC-PWY ANARESPACC-PWY ENZYME: NRFB_ECOLI P32707[B] (NOG06692[S]) Cytochrome c-type protein nrfB precursor. ENZYME: AGP_ECOLI P19926[U] (NOG05926[S]) Glucose-1-phosphatase precursor (EC 3.1.3.10) (G1Pase). ENZYME: NRFA_ECOLI P32050[BL] (COG3303[P]) Cytochrome c552 precursor (EC 1.7.2.2) (Ammonia-forming cytochrome c nitrite reductase) (Cytochrome c nitrite reductase). ENZYME: NRFD_ECOLI P32709[U] (COG3301[P]) NrfD protein. P32150[D]+(NOG09916[S]) Hypothetical protein yiiF. P45806[U]+(NOG09858[S]) Hypothetical protein yceK precursor. P19932[U]+(NOG09341[S]) Hydrogenase-1 operon protein hyaF. P07102[U]*(NOG05926[S]) Periplasmic appA protein precursor [Includes: Phosphoanhydride phosphohydrolase (EC 3.1.3.2) (pH 2.5 acid phosphatase) (AP); 6- phytase (EC 3.1.3.26)]. P31827[I]+(NOG05759[S]) Hypothetical protein yddB (CDS103). P76248[U]+(COG3615[S]) Hypothetical protein yeaR. P19934[I]+(COG3064[M]) TolA protein. P76240[U]+(COG2707[S]) Hypothetical protein yeaL. P32065[U]+(COG2363[S]) Hypothetical protein ygdD. P46147[U]+(COG2161[S]) Hypothetical protein yefM. P19929[B]+(COG1969[C]) Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit. P11027[B]+(COG1294[C]) Cytochrome D ubiquinol oxidase subunit II (EC 1.10.3.-) (Cytochrome BD-I oxidase subunit II). P26458[B]+(COG1294[C]) Cytochrome BD-II oxidase subunit II (EC 1.10.3.-). P26459[B]+(COG1271[C]) Cytochrome BD-II oxidase subunit I (EC 1.10.3.-). P11026[B]+(COG1271[C]) Cytochrome D ubiquinol oxidase subunit I (EC 1.10.3.-) (Cytochrome BD- I oxidase subunit I). [cluster '13' has 7 of 19 proteins with EC-number annotated.] Cluster '142' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) POLYISOPRENSYN-PWY ENZYME: IDI_ECOLI Q46822[HO] (COG1443[I]) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP isomerase) (Isopentenyl pyrophosphate isomerase). P75757[I]+(COG1230[P]) Zinc transporter zitB. [cluster '142' has 1 of 2 proteins with EC-number annotated.] Cluster '35' (COG majority vote 'metab', protein majority vote 'U', 13 proteins in cluster) P2-PWY ENZYME: CITG_ECOLI P77231[U] (COG1767[H]) 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (EC 4.2.-.-) (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase). P21338[U]+(NOG08896[S]) Ribonuclease I precursor (EC 3.1.27.6) (Enterobacter ribonuclease) (RNase I). P77563[U]+(COG3697[H] [I]) Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) (Holo-citrate lyase synthase) (Apo-ACP nucleodityltransferase). P77390[U]+(COG3053[C]) [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) (Citrate lyase synthetase) (Acetate:SH-citrate lyase ligase). P77618[U]+(COG3052[C]) Citrate lyase acyl carrier protein (Citrate lyase gamma chain). P75726[U]+(COG3051[C]) Citrate lyase alpha chain (EC 4.1.3.6) (Citrase) (Citrate CoA- transferase subunit) (EC 2.8.3.10). P29211[U]+(COG2985[R]) Hypothetical membrane protein yidE (ORFA). P75812[U]+(COG2985[R]) Hypothetical membrane protein ybjL. P77741[I]+(COG0471[P]) Hypothetical protein yfbS. P75763[I]+(COG0471[P]) Hypothetical protein ybhI. P39414[I]+(COG0471[P]) Putative tartrate carrier (Tartrate transporter) (Tartrate/succinate antiporter). P75788[U]+(COG0471[P]) Hypothetical protein ybiR. P77405[I]+(COG0471[P]) Citrate carrier (Citrate transporter) (Citrate/succinate antiporter). [cluster '35' has 5 of 13 proteins with EC-number annotated.] Cluster '250' (COG majority vote 'metab', protein majority vote 'go_amino', 3 proteins in cluster) ILEUSYN-PWY THREOCAT-PWY ILEUSYN-PWY THREOCAT-PWY ENZYME: THD1_ECOLI P04968[GM] (COG1171[E]) Threonine dehydratase biosynthetic (EC 4.3.1.19) (Threonine deaminase). ENZYME: THD2_ECOLI P05792[G] (COG1171[E]) Threonine dehydratase catabolic (EC 4.3.1.19) (Threonine deaminase). Q46804[G]*(COG1171[E]) Putative diaminopropionate ammonia-lyase (EC 4.3.1.15) (Diaminopropionatase) (Alpha,beta-diaminopropionate ammonia-lyase). [cluster '250' has 3 of 3 proteins with EC-number annotated.] Cluster '167' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 3 proteins in cluster) FERMENTATION-PWY HCAMHPDEG-PWY HCAMHPDEG-PWY ENZYME: MHPF_ECOLI P77580[LN] (NOG04836[S]) Acetaldehyde dehydrogenase (EC 1.2.1.10) (Acetaldehyde dehydrogenase [acetylating]). ENZYME: MHPD_ECOLI P77608[LN] (COG0179[Q]) 2-keto-4-pentenoate hydratase (EC 4.2.1.-) (2-hydroxypentadienoic acid hydratase). P76004[L]*(COG0179[Q]) Protein ycgM. [cluster '167' has 2 of 3 proteins with EC-number annotated.] Cluster '166' (COG majority vote 'metab', protein majority vote 'go_metab_others', 2 proteins in cluster) 1CMET2-PWY FOLSYN-PWY DEOXYPYRNUCMET-PWY 1CMET2-PWY ENZYME: DYR_ECOLI P00379[GLO] (COG0262[H]) Dihydrofolate reductase (EC 1.5.1.3). ENZYME: TYSY_ECOLI P00470[FLO] (COG0207[F]) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase). [cluster '166' has 2 of 2 proteins with EC-number annotated.] Cluster '74' (COG majority vote 'unknown', protein majority vote 'U', 4 proteins in cluster) GALACTARDEG-PWY ENZYME: GARD_ECOLI P39829[U] (COG2721[G]) D-galactarate dehydratase (EC 4.2.1.42) (GalcD). P15373[U]+(NOG17561[S]) HtrA suppressor protein (Protein prlF). P42901[U]+(NOG14121[S]) Hypothetical protein yhaV. P37912[U]+(COG1385[S]) Hypothetical protein yggJ. [cluster '74' has 1 of 4 proteins with EC-number annotated.] Cluster '111' (COG majority vote 'metab', protein majority vote 'go_metab_others', 4 proteins in cluster) ACETATEUTIL-PWY ENZYME: ACSA_ECOLI P27550[L] (COG0365[I]) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl- activating enzyme). P75762[U]+(COG2828[S]) Hypothetical protein ybhH. P77541[L]+(COG2513[G]) Probable methylisocitrate lyase (EC 4.1.3.30) (2-methylisocitrate lyase). P77495[L]*(COG0365[I]) Propionate--CoA ligase (EC 6.2.1.17) (Propionyl-CoA synthetase). [cluster '111' has 3 of 4 proteins with EC-number annotated.] Cluster '68' (COG majority vote 'metab', protein majority vote 'mix', 5 proteins in cluster) PURSYN-PWY FERMENTATION-PWY PYRUVOX-PWY ACETATEUTIL-PWY PHOSLIPSYN-PWY ENZYME: DPSD_ECOLI P10740[HO] (COG0688[I]) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65). ENZYME: PURT_ECOLI P33221[O] (COG0027[F]) Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase). P36560[U]+(NOG08649[S]) Acid shock protein precursor. P76176[EN]+(COG3591[E]) Putative protease ydgD precursor (EC 3.4.21.-). P24188[U]+(COG1054[R]) Hypothetical protein yceA (ORF39.9). [cluster '68' has 3 of 5 proteins with EC-number annotated.] Cluster '36' (COG majority vote 'inf', protein majority vote 'mix', 9 proteins in cluster) GALACTARDEG-PWY GLUCARDEG-PWY ENZYME: GARL_ECOLI P23522[U] (NOG21024[S]) 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) (2-keto-3- deoxyglucarate aldolase) (2-dehydro-3-deoxygalactarate aldolase) (DDG aldolase) (5-keto-4-deoxy-D-glucarate aldolase) (KDGlucA). P76469[U]*(NOG21024[S]) Hypothetical protein yfaU. P33228[C]+(NOG04874[S]) RecT protein (P33). P75828[U]+(COG3593[L]) Hypothetical protein ybjD. P24197[BL]+(COG3384[S]) Hypothetical protein ygiD. P15005[C]+(COG1401[L]) 5-methylcytosine-specific restriction enzyme B (EC 3.1.21.-) (EcoKMcrBC). P05719[C]+(COG0732[L]) Type I restriction enzyme EcoKI specificity protein (S protein) (S.EcoKI). P08956[C]+(COG0610[L]) Type I restriction enzyme EcoKI R protein (EC 3.1.21.3) (R.EcoKI). P08957[C]+(COG0286[L]) Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI). [cluster '36' has 4 of 9 proteins with EC-number annotated.] Cluster '26' (COG majority vote 'mixed', protein majority vote 'mix', 15 proteins in cluster) ASPASN-PWY ENZYME: ASPA_ECOLI P04422[G] (COG1027[E]) Aspartate ammonia-lyase (EC 4.3.1.1) (Aspartase). P32689[U]+(NOG08893[S]) Hypothetical lipoprotein yjbH precursor. P75947[U]+(COG3417[N]) Hypothetical protein ycfM. P23896[U]+(COG3223[S]) Hypothetical protein yjbA. Q46831[U]+(COG1811[R]) Hypothetical protein yqgA. P77174[U]+(COG1475[K]) Hypothetical protein ybdM. Q9S4W2[J]+(COG1475[K]) Hypothetical 71.8 kDa protein (YfjB protein). P76068[U]+(COG1475[K]) Hypothetical protein ynaK. P37655[U]+(COG1192[D]) Hypothetical protein yhjQ. P08866[J]+(COG1192[D]) SopA protein (Plasmid partition protein A). P22563[E]+(COG1047[O]) FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase). P30856[E]+(COG1047[O]) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC 5.2.1.8) (PPiase) (Rotamase) (Histidine rich protein) (WHP). P06709[DE]+(COG0340[H] COG1654[H] [K]) BirA bifunctional protein [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)]. P21166[I]+(COG0168[P]) Trk system potassium uptake protein trkH. P23849[I]+(COG0168[P]) Trk system potassium uptake protein trkG. [cluster '26' has 4 of 15 proteins with EC-number annotated.] Cluster '21' (COG majority vote 'unknown', protein majority vote 'mix', 18 proteins in cluster) GLUTATHIONESYN-PWY ENZYME: GSH1_ECOLI P06980[O] (COG2918[H]) Glutamate--cysteine ligase (EC 6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS). P15081[DI]+(NOG07944[S]) Glucitol operon activator protein. P05706[I]+(NOG07578[S]) PTS system, glucitol/sorbitol-specific IIA component (EIIA-gut) (Glucitol/sorbitol-permease IIA component) (Phosphotransferase enzyme II, A component) (EC 2.7.1.69) (EIII-gut). P56579[I]+(NOG06301[S]) PTS system, glucitol/sorbitol-specific IIC2 component (EIIC2-GUT) (Glucitol/sorbitol-permease IIC2 component) (Phosphotransferase enzyme II, C2 component). P56580[I]+(NOG04365[S]) PTS system, glucitol/sorbitol-specific IIBC component (EIIBC-GUT) (Glucitol/sorbitol-permease IIBC component) (Phosphotransferase enzyme II, BC component) (EC 2.7.1.69) (EII-GUT). P03835[C]+(COG3385[L]) Transposase insG for insertion sequence element IS4. P08409[C]+(COG3385[L]) Putative transposase insL for insertion sequence element IS186A/B/C. P31469[U]+(COG3196[S]) Hypothetical protein yieJ. P76563[U]+(COG2321[R]) Hypothetical protein ypfJ. P77154[A]+(COG1554[G]) Hypothetical transport protein ycjT. P23256[DGO]+(COG1168[E]) MalY protein [Includes: Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase); Maltose regulon modulator]. P77247[L]+(COG0637[R]) Hypothetical protein yniC. P31467[L]+(COG0637[R]) Hypothetical protein yieH. P77366[L]+(COG0637[R]) Putative beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM). P77475[L]+(COG0637[R]) Hypothetical protein yqaB. P77625[L]+(COG0637[R]) Protein yfbT. P45395[A]+(COG0517[R] COG0794[M]) Hypothetical protein yrbH. P17115[A]+(COG0517[R] COG0794[M]) GutQ protein. [cluster '21' has 5 of 18 proteins with EC-number annotated.] Cluster '34' (COG majority vote 'unknown', protein majority vote 'U', 11 proteins in cluster) GLUCARDEG-PWY ENZYME: GUDH_ECOLI P76637[L] (COG1441[H]) Glucarate dehydratase (EC 4.2.1.40) (GDH) (GlucD). P32134[U]+(NOG09340[S]) Hypothetical protein yihM. P45848[U]+(NOG06441[S]) Hypothetical protein yciQ. Q46938[U]+(NOG04314[S]) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) (5-keto-4-deoxyuronate isomerase) (DKI isomerase). P37674[U]+(COG3090[S]) Hypothetical protein yiaM. P39371[U]+(COG3055[S]) Hypothetical protein yjhT precursor. P37676[I]+(COG1638[G]) Putative ABC transporter periplasmic binding protein yiaO precursor. P37675[U]+(COG1593[S]) Hypothetical protein yiaN. Q46915[L]*(COG1441[H]) Glucarate dehydratase related protein (EC 4.2.1.-) (GDH-RP) (GlucDRP). P51981[L]*(COG1441[H]) Hypothetical protein ycjG. P77215[L]*(COG1441[H]) Hypothetical protein yfaW. [cluster '34' has 3 of 11 proteins with EC-number annotated.] Cluster '29' (COG majority vote 'mixed', protein majority vote 'I', 21 proteins in cluster) MANNCAT-PWY COLANSYN-PWY MANGDPMET-PWY ENZYME: MANA_ECOLI P00946[A] (COG1482[G]) Mannose-6-phosphate isomerase (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) (Phosphohexomutase). P28917[U]+(NOG06942[S]) H repeat-associated protein ydcC (ORF-H). P28916[U]+(NOG06942[S]) H repeat-associated protein ybfD (ORF-H3). P28912[U]+(NOG06942[S]) H repeat-associated protein yhhI (ORF-H). P75741[U]+(NOG06942[S]) H repeat-associated protein in rhsC-phrB intergenic region (ORF-H2). P76119[U]+(NOG06942[S]) From BASES 1528490 to 1540683 (Section 133 of 400) of the complete genome (Section 133 of 400). P11989[D]+(NOG04908[S]) Cryptic beta-glucoside bgl operon antiterminator. P77262[U]+(COG3477[S]) Hypothetical protein yagU. P31471[A]+(COG2382[P]) Hypothetical protein yieL. P13039[I]+(COG2382[P]) Enterochelin esterase (Ferric enterobactin esterase). P08837[I]+(COG2190[G]) PTS system, glucose-specific IIA component (EIIA-GLC) (Glucose- permease IIA component) (Phosphotransferase enzyme II, A component) (EC 2.7.1.69) (EIII-GLC). P76008[A]+(COG1619[S]) Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) (LD- carboxypeptidase A). P09323[I]+(COG1263[G] COG1264[G] COG2190[G]) PTS system, N-acetylglucosamine-specific IIABC component (EIIABC-NAG) (N-acetylglucosamine-permease IIABC component) (Phosphotransferase enzyme II, ABC component) (EC 2.7.1.69) (EII-NAG). P08722[I]+(COG1263[G] COG1264[G] COG2190[G]) PTS system, beta-glucoside-specific IIABC component (EIIABC-Bgl) (Beta-glucoside-permease IIABC component) (Phosphotransferase enzyme II, ABC component) (EC 2.7.1.69) (EII-Bgl). P24241[I]+(COG1263[G] COG1264[G]) PTS system, arbutin-, cellobiose-, and salicin-specific IIABC component (EIIABC-ASC) (Arbutin-, cellobiose-, and salicin-permease IIABC component) (Phosphotransferase enzyme II, ABC component) (EC 2.7.1.69) (EII-ASC). P19642[I]+(COG1263[G] COG1264[G]) PTS system, maltose and glucose-specific IIABC component (Maltose and glucose-permease IIABC component) (Phosphotransferase enzyme II, ABC component) (EC 2.7.1.69). P36672[I]+(COG1263[G] COG1264[G]) PTS system, trehalose-specific IIBC component (EIIBC-TRE) (Trehalose- permease IIBC component) (Phosphotransferase enzyme II, BC component) (EC 2.7.1.69) (EII-TRE). P77272[I]+(COG1263[G] COG1264[G]) Putative PTS system IIBC component yfeV (EC 2.7.1.69). P05053[I]+(COG1263[G] COG1264[G]) PTS system, glucose-specific IIBC component (EIIBC-Glc) (Glucose- permease IIBC component) (Phosphotransferase enzyme II, BC component) (EC 2.7.1.69) (EII-Glc). P31451[I]+(COG1263[G]) PTS system, arbutin-like IIB component (Phosphotransferase enzyme II, B component) (EC 2.7.1.69). P31452[I]+(COG1263[G]) PTS system, arbutin-like IIC component (Phosphotransferase enzyme II, C component). [cluster '29' has 11 of 21 proteins with EC-number annotated.] Cluster '20' (COG majority vote 'mixed', protein majority vote 'mix', 13 proteins in cluster) SORBDEG-PWY MANNIDEG-PWY GLYCOLYSIS GLUCONEO-PWY ENZYME: ALF_ECOLI P11604[AN] (NOG21012[S]) Fructose-bisphosphate aldolase class II (EC 4.1.2.13) (FBP aldolase). P13656[ALN]+(NOG06006[S]) Probable bifunctional chitinase/lysozyme precursor [Includes: Chitinase (EC 3.2.1.14); Lysozyme (EC 3.2.1.17)]. P11668[U]+(COG2968[S]) Hypothetical protein yggE. P45531[U]+(COG2923[P]) Hypothetical protein yheM. P76316[G]+(COG2515[E]) Putative 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) (ACC deaminase). P45530[U]+(COG2168[P]) Hypothetical protein yheL. Q47152[U]+(COG1943[L]) Hypothetical protein yafM. P39164[U]+(COG1553[P]) Hypothetical protein ychN. P45532[U]+(COG1553[P]) Hypothetical protein yheN. P76562[U]+(COG1444[R]) Hypothetical protein ypfI. P11667[I]+(COG1279[R]) Hypothetical protein yggA. P05458[EN]+(COG1025[O]) Protease III precursor (EC 3.4.24.55) (Pitrilysin) (Protease pi). P28688[LO]+(COG0855[P]) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid kinase) (ATP- polyphosphate phosphotransferase). [cluster '20' has 5 of 13 proteins with EC-number annotated.] Cluster '84' (COG majority vote 'mixed', protein majority vote 'mix', 5 proteins in cluster) DRIBOPMET-PWY PYR-RIBONUCMET-PWY ENZYME: UDP_ECOLI P12758[U] (COG2820[F]) Uridine phosphorylase (EC 2.4.2.3) (UDRPase). P75885[U]+(NOG18340[S]) Hypothetical protein ymcD. P46135[U]+(COG2841[S]) Hypothetical protein ydcH. P75880[EL]+(COG0394[T]) Low molecular weight protein-tyrosine-phosphatase etp (EC 3.1.3.48). P77153[AELO]+(COG0394[T]) Low molecular weight protein-tyrosine-phosphatase wzb (EC 3.1.3.48). [cluster '84' has 3 of 5 proteins with EC-number annotated.] Cluster '42' (COG majority vote 'unknown', protein majority vote 'U', 8 proteins in cluster) DRIBOPMET-PWY ENZYME: DEOB_ECOLI P07651[U] (COG1015[G]) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase). P45547[U]+(NOG15948[S]) Hypothetical protein yhfU. P45552[U]+(NOG13592[S]) Hypothetical protein yhfZ. P45546[U]+(NOG11603[S]) Hypothetical protein yhfT. P45551[U]+(NOG10001[S]) Hypothetical protein yhfY. P45550[U]+(COG3457[E]) Hypothetical protein yhfX. P45548[N]+(COG1735[R]) Phosphotriesterase homology protein. P45549[U]*(COG1015[G]) Hypothetical protein yhfW. [cluster '42' has 1 of 8 proteins with EC-number annotated.] Cluster '120' (COG majority vote 'metab', protein majority vote 'go_amino', 2 proteins in cluster) PURSYN-PWY PURSYN-PWY ENZYME: PUR7_ECOLI P21155[U] (COG0152[F]) Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) (SAICAR synthetase). ENZYME: PUR4_ECOLI P15254[G] (COG0046[F] COG0047[F]) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase). [cluster '120' has 2 of 2 proteins with EC-number annotated.] Cluster '172' (COG majority vote 'metab', protein majority vote 'mix', 4 proteins in cluster) TCA TCA ENZYME: SUCD_ECOLI P07459[L] (COG0074[C]) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5) (SCS-alpha). ENZYME: SUCC_ECOLI P07460[L] (COG0045[C]) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta). P77187[U]*(COG0074[C]) Hypothetical protein yahF. Q47208[U]*(COG0074[C]) Protein fdrA. [cluster '172' has 2 of 4 proteins with EC-number annotated.] Cluster '133' (COG majority vote 'metab', protein majority vote 'U', 4 proteins in cluster) TCA ANARESP1-PWY FERMENTATION-PWY TCA ANARESP1-PWY FERMENTATION-PWY ENZYME: FUMB_ECOLI P14407[U] (COG1838[C] COG1951[C]) Fumarate hydratase class I, anaerobic (EC 4.2.1.2) (Fumarase). ENZYME: FUMA_ECOLI P00923[U] (COG1838[C] COG1951[C]) Fumarate hydratase class I, aerobic (EC 4.2.1.2) (Fumarase). P05847[U]*(COG1951[C]) L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32) (L-TTD alpha). P05851[U]*(COG1838[C]) L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) (L-TTD beta). [cluster '133' has 4 of 4 proteins with EC-number annotated.] Cluster '12' (COG majority vote 'unknown', protein majority vote 'mix', 27 proteins in cluster) UBISYN-PWY AERESPDON-PWY GLYCEROLMETAB-PWY AERESPDON-PWY ANARESPDON-PWY PYRUVOX-PWY ENZYME: POXB_ECOLI P07003[U] (NOG21033[S]) Pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) (Pyruvate oxidase) (POX) (Pyruvate dehydrogenase [Ubiquinone]). ENZYME: UBIB_ECOLI P27854[O] (COG0661[R]) Probable ubiquinone biosynthesis protein ubiB. ENZYME: DLD_ECOLI P06149[B] (COG0277[C]) D-lactate dehydrogenase (EC 1.1.1.28) (Respiratory D-lactate dehydrogenase). ENZYME: GLPC_ECOLI P13034[B] (COG0247[C]) Anaerobic glycerol-3-phosphate dehydrogenase subunit C (G-3-P dehydrogenase). P76016[ADHLN]+(COG3284[Q]) Glycerol metabolism operon regulatory protein. P45504[U]+(COG3193[S]) Protein glcG. P76243[U]+(COG3189[S]) Hypothetical protein yeaO. P45736[U]+(COG2852[S]) Hypothetical protein ycjD. P52697[U]+(COG2706[G]) Hypothetical protein ybhE. Q46926[U]+(COG2166[R]) Hypothetical protein ygdK. P76194[U]+(COG2166[R]) SufE protein. P33231[I]+(COG1620[C]) L-lactate permease. Q46839[I]+(COG1620[C]) Glycolate permease glcA. P77433[U]+(COG1556[S]) Hypothetical protein ykgG. P77536[B]+(COG1139[C]) Putative electron transport protein ykgF. P31826[I]+(COG1133[I]) Hypothetical ABC transporter ATP-binding protein yddA (CDS102). P24212[I]+(COG1133[I]) SbmA protein. P77689[U]+(COG0719[R]) SufD protein. P77522[U]+(COG0719[R]) SufB protein. P39378[U]+(COG0700[S]) Hypothetical protein yjiG. P77499[I]+(COG0396[R]) Probable ATP-dependent transporter sufC. P52075[B]*(COG0277[C]) Glycolate oxidase subunit glcD. P52073[B]*(COG0277[C]) Glycolate oxidase subunit glcE. Q46911[B]*(COG0277[C]) Hypothetical flavoprotein ygcU. P77748[B]*(COG0247[C] COG0277[C]) Hypothetical protein ydiJ. P77252[U]*(COG0247[C]) Hypothetical protein ykgE. P52074[B]*(COG0247[C]) Glycolate oxidase iron-sulfur subunit. [cluster '12' has 2 of 27 proteins with EC-number annotated.] Cluster '89' (COG majority vote 'unknown', protein majority vote 'U', 3 proteins in cluster) GLYOXDEG-PWY GLYOXYLATE-BYPASS ENZYME: MASZ_ECOLI P37330[U] (NOG21002[S]) Malate synthase G (EC 4.1.3.2) (MSG). P39390[U]+(NOG09819[S]) Hypothetical protein yjiS. P09996[U]+(NOG08862[S]) Hypothetical protein yidB. [cluster '89' has 1 of 3 proteins with EC-number annotated.] Cluster '47' (COG majority vote 'mixed', protein majority vote 'U', 10 proteins in cluster) DEOXYPYRNUCMET-PWY ENZYME: KTHY_ECOLI P37345[O] (COG0125[F]) Thymidylate kinase (EC 2.7.4.9) (dTMP kinase). P76244[U]+(COG3042[S]) Hypothetical protein yoaF. P13738[IK]+(COG3004[P]) Na(+)/H(+) antiporter 1 (Sodium/proton antiporter 1). P46852[U]+(COG1741[R]) Protein yhhW. P42624[U]+(COG1741[R]) Hypothetical protein yhaK. P28631[CJ]+(COG0470[L]) DNA polymerase III, delta' subunit (EC 2.7.7.7). P75819[U]+(COG0393[S]) Hypothetical protein ybjQ. P37346[U]+(COG0084[L]) Putative deoxyribonuclease ycfH (EC 3.1.21.-). P27859[U]+(COG0084[L]) Deoxyribonuclease tatD (EC 3.1.21.-) (DNAse tatD). P39408[U]+(COG0084[L]) Putative deoxyribonuclease yjjV (EC 3.1.21.-). [cluster '47' has 5 of 10 proteins with EC-number annotated.] Cluster '19' (COG majority vote 'metab', protein majority vote 'mix', 28 proteins in cluster) COLANSYN-PWY GALACTMETAB-PWY OXIDATIVEPENT-PWY ENZYME: G6PD_ECOLI P22992[U] (COG0364[G]) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD). ENZYME: GAL1_ECOLI P06976[L] (COG0153[G]) Galactokinase (EC 2.7.1.6) (Galactose kinase). P32141[U]+(COG3684[G]) Hypothetical protein yihT. P32140[U]+(COG2942[G]) Hypothetical protein yihS. P39356[D]+(COG2390[K]) Hypothetical transcriptional regulator yjhU. P76141[D]+(COG2390[K]) Hypothetical transcriptional regulator ydeW. P32136[I]+(COG2211[G]) Hypothetical symporter yihO. P75683[I]+(COG2211[G]) Hypothetical symporter yagG. P32137[I]+(COG2211[G]) Hypothetical symporter yihP. P02921[I]+(COG2211[G]) Melibiose carrier protein (Thiomethylgalactoside permease II) (Melibiose permease) (Na+ (Li+)/melibiose symporter) (Melibiose transporter). P31435[I]+(COG2211[G]) Hypothetical symporter yicJ. P30868[I]+(COG2211[G]) Glucuronide carrier protein (Glucuronide permease). P29745[EN]+(COG2195[E]) Peptidase T (EC 3.4.11.14) (Tripeptide aminopeptidase) (Aminotripeptidase) (Tripeptidase). P15288[EN]+(COG2195[E]) Aminoacyl-histidine dipeptidase (EC 3.4.13.3) (Xaa-His dipeptidase) (X-His dipeptidase) (Beta-alanyl-histidine dipeptidase) (Carnosinase) (Peptidase D). P75744[U]+(COG2049[E]) Hypothetical protein ybgJ. P75745[U]+(COG1984[E]) Hypothetical protein ybgK. P75746[U]+(COG1540[R]) Protein ybgL. P32138[A]+(COG1501[G]) Putative family 31 glucosidase yihQ. P31434[A]+(COG1501[G]) Putative family 31 glucosidase yicI. P75769[U]+(COG0670[R]) Hypothetical protein ybhM. P75768[U]+(COG0670[R]) Hypothetical protein ybhL. P06967[U]+(COG0670[R]) Hypothetical protein yccA. P09997[L]+(COG0561[R]) Hypothetical protein yidA. P21829[L]+(COG0561[R]) Hypothetical protein ybhA. P75809[L]+(COG0561[R]) Protein ybjI. P75792[L]+(COG0561[R]) Hypothetical protein ybiV. P46891[L]+(COG0561[R]) Cof protein. P27848[U]+(COG0561[R]) Hypothetical protein yigL. [cluster '19' has 4 of 28 proteins with EC-number annotated.] Cluster '102' (COG majority vote 'metab', protein majority vote 'go_metab_others', 3 proteins in cluster) HCAMHPDEG-PWY GLYOXYLATE-BYPASS ENZYME: ACEA_ECOLI P05313[L] (COG2224[C]) Isocitrate lyase (EC 4.1.3.1) (Isocitrase) (Isocitratase) (ICL). ENZYME: MHPA_ECOLI P77397[BLN] (COG0654[H] [C]) 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-). P37610[B]+(COG2175[Q]) Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) (2- aminoethanesulfonate dioxygenase) (Sulfate starvation-induced protein 3) (SSI3). [cluster '102' has 3 of 3 proteins with EC-number annotated.] Cluster '85' (COG majority vote 'mixed', protein majority vote 'U', 9 proteins in cluster) HEMESYN2-PWY ENZYME: HEM6_ECOLI P36553[O] (COG0408[H]) Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase). P36540[U]+(COG1076[O]) Chaperone protein hscB (Hsc20). P31680[U]+(COG1076[O]) DnaJ-like protein djlA. P77438[U]+(COG0565[J]) Hypothetical tRNA/rRNA methyltransferase yfhQ (EC 2.1.1.-). P37005[U]+(COG0565[J]) Hypothetical tRNA/rRNA methyltransferase lasT (EC 2.1.1.-). P46847[U]+(COG0316[S] COG0694[O]) Protein yhgI. P36539[U]+(COG0316[S]) Protein yfhF. P77667[U]+(COG0316[S]) SufA protein. P37026[U]+(COG0316[S]) Hypothetical protein yadR. [cluster '85' has 3 of 9 proteins with EC-number annotated.] Cluster '319' (COG majority vote 'metab', protein majority vote 'mix', 2 proteins in cluster) GLUCONEO-PWY GLUCONEO-PWY ENZYME: MAO1_ECOLI P26616[U] (COG0281[C]) NAD-dependent malic enzyme (EC 1.1.1.38) (NAD-ME). ENZYME: MAO2_ECOLI P76558[L] (COG0280[C] COG0281[C]) NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME). [cluster '319' has 2 of 2 proteins with EC-number annotated.] Cluster '46' (COG majority vote 'metab', protein majority vote 'go_metab_others', 7 proteins in cluster) NUCMET2-PWY HEMESYN2-PWY ENZYME: ADD_ECOLI P22333[U] (COG1816[F]) Adenosine deaminase (EC 3.5.4.4) (Adenosine aminohydrolase). ENZYME: CYOE_ECOLI P18404[U] (COG0109[H]) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O synthase). P18403[B]+(COG3125[C]) Cytochrome O ubiquinol oxidase protein cyoD (Ubiquinol oxidase chain D). P32127[U]+(COG2334[R]) Hypothetical protein yihE. P18402[B]+(COG1845[C]) Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) (Ubiquinol oxidase chain C). P18400[B]+(COG1622[C]) Ubiquinol oxidase polypeptide II precursor (EC 1.10.3.-) (Cytochrome O subunit 2) (Oxidase BO(3) subunit 2) (Cytochrome O ubiquinol oxidase subunit 2) (Ubiquinol oxidase chain B). P18401[B]+(COG0843[C]) Ubiquinol oxidase polypeptide I (EC 1.10.3.-) (Cytochrome O subunit 1) (Oxidase BO(3) subunit 1) (Cytochrome O ubiquinol oxidase subunit 1) (Ubiquinol oxidase chain A). [cluster '46' has 5 of 7 proteins with EC-number annotated.] Cluster '52' (COG majority vote 'metab', protein majority vote 'go_metab_others', 14 proteins in cluster) PYR-RIBONUCMET-PWY ENZYME: CODA_ECOLI P25524[U] (COG0402[F] [R]) Cytosine deaminase (EC 3.5.4.1) (Cytosine aminohydrolase). P76341[I]+(COG2351[R]) Transthyretin-like protein precursor. Q46801[B]+(COG2080[C]) Xanthine dehydrogenase iron-sulfur binding subunit. P77165[B]+(COG2080[C]) Putative xanthine dehydrogenase yagT iron-sulfur binding subunit. Q46814[B]+(COG1529[C] COG2080[C]) Possible hypoxanthine oxidase xdhD (EC 1.-.-.-). P77489[B]+(COG1529[C]) Putative xanthine dehydrogenase yagR, molybdenum binding subunit (EC 1.1.1.204). Q46799[B]+(COG1529[C]) Xanthine dehydrogenase, molybdenum binding subunit (EC 1.1.1.204). P25525[I]+(COG1457[F]) Cytosine permease. Q46813[B]+(COG1319[C]) Hypothetical protein ygfM. P77324[B]+(COG1319[C]) Putative xanthine dehydrogenase yagS, FAD binding subunit (EC 1.1.1.204). Q46800[B]+(COG1319[C]) Xanthine dehydrogenase, FAD binding subunit (EC 1.1.1.204). Q46812[U]*(COG0402[F] [R]) SsnA protein. P76641[U]*(COG0402[F] [R]) Guanine deaminase (EC 3.5.4.3) (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH). P77554[U]*(COG0402[F] [R]) Hypothetical protein yahJ. [cluster '52' has 7 of 14 proteins with EC-number annotated.] Cluster '160' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) PYRIMSYN-PWY ENZYME: PYRC_ECOLI P05020[O] (COG0418[F]) Dihydroorotase (EC 3.5.2.3) (DHOase). P37904[U]+(COG2353[S]) Protein yceI precursor. [cluster '160' has 1 of 2 proteins with EC-number annotated.] Cluster '132' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) PYRIDOXSYN-PWY ENZYME: PDXA_ECOLI P19624[O] (COG1995[H]) 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) (4- (phosphohydroxy)-L-threonine dehydrogenase). P32172[I]+(NOG04034[S]) 2-keto-3-deoxygluconate permease (KDG permease). [cluster '132' has 1 of 2 proteins with EC-number annotated.] Cluster '22' (COG majority vote 'unknown', protein majority vote 'U', 11 proteins in cluster) HCAMHPDEG-PWY ENZYME: MHPB_ECOLI P54711[BLN] (NOG08510[S]) 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (EC 1.13.11.-). P40721[U]+(NOG13124[S]) Hypothetical protein ydiE. Q47702[U]+(NOG12249[S]) Hypothetical protein yfeK precursor. P78271[U]+(NOG09458[S]) Hypothetical protein yfeS. P22709[U]+(NOG08630[S]) TraX protein. P22586[K]+(NOG08541[S]) Flagellar protein fliO. P32151[U]+(NOG07399[S]) Hypothetical protein yiiG. P27842[U]+(NOG07389[S]) Hypothetical protein yigF. P39293[U]+(NOG07367[S]) Hypothetical protein yjfK. P76010[U]+(NOG06068[S]) Hypothetical protein ycgR. P45804[U]+(NOG05190[S]) Hypothetical protein yhgE. [cluster '22' has 1 of 11 proteins with EC-number annotated.] Cluster '75' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 12 proteins in cluster) ANARESP1-PWY FERMENTATION-PWY THREOCAT-PWY ENZYME: TDCE_ECOLI P42632[AL] (COG1882[C]) Keto-acid formate acetyltransferase (EC 2.3.1.-) (Keto-acid formate- lyase). P37342[U]+(NOG04344[S]) Hypothetical protein yjjI. P33021[I]+(COG1972[F]) Hypothetical transport protein yeiJ. P33024[I]+(COG1972[F]) Hypothetical transport protein yeiM. P33031[I]+(COG1972[F]) Nucleoside permease nupC (Nucleoside-transport system protein nupC). P75793[L]*(COG1882[C]) Putative formate acetyltransferase 3 (EC 2.3.1.54) (Pyruvate formate- lyase 3). P09373[AL]*(COG1882[C]) Formate acetyltransferase 1 (EC 2.3.1.54) (Pyruvate formate-lyase 1). P32674[L]*(COG1882[C]) Formate acetyltransferase 2 (EC 2.3.1.54) (Pyruvate formate-lyase 2). P32675[L]+(COG1180[O]) Pyruvate formate-lyase 2 activating enzyme (EC 1.97.1.4) (PFL- activating enzyme). P75794[L]+(COG1180[O]) Putative pyruvate formate-lyase 3 activating enzyme (EC 1.97.1.4). P39409[B]+(COG1180[O]) Hypothetical protein yjjW. P09374[L]+(COG1180[O]) Pyruvate formate-lyase 1 activating enzyme (EC 1.97.1.4) (PFL- activating enzyme). [cluster '75' has 7 of 12 proteins with EC-number annotated.] Cluster '33' (COG majority vote 'unknown', protein majority vote 'U', 9 proteins in cluster) HCAMHPDEG-PWY ENZYME: HCAF_ECOLI Q47140[BLN] (NOG12164[S]) 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-) (Digoxigenin beta subunit). P75910[U]+(NOG18952[S]) Hypothetical protein ycdU. P23864[U]+(NOG18544[S]) Hypothetical protein ydcA precursor. Q47269[U]+(NOG12227[S]) Hypothetical protein ybcN in lambdoid DLP12 prophage region. P46130[U]+(NOG06576[S]) Putative lipoprotein ybHC precursor. P76146[U]+(NOG05567[S]) Hypothetical protein yneE. P77306[U]+(COG2268[S]) Hypothetical protein yqiK. P77368[U]+(COG1881[R]) Protein ybcL precursor. P12994[U]+(COG1881[R]) Protein ybhB. [cluster '33' has 1 of 9 proteins with EC-number annotated.] Cluster '154' (COG majority vote 'mixed', protein majority vote 'mix', 3 proteins in cluster) ARGSYN-PWY ENZYME: ARGE_ECOLI P23908[EGLMN] (COG0624[E]) Acetylornithine deacetylase (EC 3.5.1.16) (Acetylornithinase) (AO) (N-acetylornithinase) (NAO). P32664[U]+(COG2816[L]) NADH pyrophosphatase (EC 3.6.1.-). Q46805[EN]*(COG0624[E]) Hypothetical protein ygeY. [cluster '154' has 2 of 3 proteins with EC-number annotated.] Cluster '113' (COG majority vote 'unknown', protein majority vote 'mix', 3 proteins in cluster) DAPLYSINESYN-PWY ENZYME: DAPF_ECOLI P08885[GM] (COG0253[E]) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase). P75685[U]+(COG3059[S]) Hypothetical protein ykgB. P27297[AN]+(COG2992[R]) BAX protein. [cluster '113' has 1 of 3 proteins with EC-number annotated.] Cluster '302' (COG majority vote 'metab', protein majority vote 'go_metab_others', 2 proteins in cluster) GLYCOLYSIS GLUCONEO-PWY ENZYME: GPMB_ECOLI P36942[ALN] (COG0406[G]) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM). P52086[LO]*(COG0406[G]) Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.-). [cluster '302' has 2 of 2 proteins with EC-number annotated.] Cluster '257' (COG majority vote 'unknown', protein majority vote 'U', 3 proteins in cluster) FERMENTATION-PWY ENZYME: ADHP_ECOLI P39451[U] (COG1064[R]) Alcohol dehydrogenase, propanol-preferring (EC 1.1.1.1). P75691[U]*(COG1064[R]) Hypothetical zinc-type alcohol dehydrogenase-like protein yahK. P27250[U]*(COG1064[R]) Hypothetical zinc-type alcohol dehydrogenase-like protein yjgB. [cluster '257' has 1 of 3 proteins with EC-number annotated.] Cluster '2' (COG majority vote 'unknown', protein majority vote 'U', 186 proteins in cluster) P75926[U]+(NOG20200[S]) Hypothetical protein yceO. Q47272[U]+(NOG20052[S]) Hypothetical protein ylcG in lambdoid DLP12 prophage region. P24244[U]+(NOG20001[S]) Hypothetical protein yccB. P45421[U]+(NOG19950[S]) Hypothetical protein yhcE. P46877[U]+(NOG19555[S]) Hypothetical protein yqgB. Q47715[U]+(NOG19468[S]) COLI chromosomal region from 89.2 to 92.8 MINUTES (Orf, hypothetical protein). P06627[U]+(NOG19248[S]) TraY protein. Q05807[U]+(NOG19040[S]) TrbE protein. P75970[C]+(NOG18770[S]) Excisionase-like protein from lambdoid prophage 14. P75993[U]+(NOG18721[S]) Hypothetical protein ymgB. P41070[U]+(NOG18651[S]) TrbD protein. P09150[U]+(NOG18558[S]) PyrBI operon leader peptide (Attenuator). P06626[D]+(NOG18301[S]) TraJ protein. P03060[GM]+(NOG18101[S]) IlvGMEDA operon leader peptide (Attenuator peptide). P03059[GM]+(NOG17852[S]) Thr operon leader peptide (Thr operon attenuator). P09149[GM]+(NOG17715[S]) Leu operon leader peptide. P75973[U]+(NOG17606[S]) Hypothetical protein ymfF. P77180[U]+(NOG17119[S]) Hypothetical protein ykgH. P58096[U]+(NOG16682[S]) Hypothetical protein ysdA. P76807[U]+(NOG16259[S]) Hypothetical 12.8 kDa protein in PYRL-ARGI intergenic region (ORF_O110). P37770[U]+(NOG16016[S]) Hypothetical protein yhfG. P28690[U]+(NOG15821[S]) 30S ribosomal protein S22 (Stationary-phase-induced ribosome- associated protein) (SRA) (Protein D). P38394[U]+(NOG15795[S]) Hypothetical protein ydaE. P75620[U]+(NOG15591[S]) Hypothetical protein yaaY. P76267[U]+(NOG15551[S]) Hypothetical protein yobG. Q46854[U]+(NOG15523[S]) ORF_F51 (Orf, hypothetical protein). P52635[U]+(NOG15356[S]) GnsA protein. P39412[U]+(NOG15327[S]) Hypothetical protein yjjY. P16077[U]+(NOG15140[S]) Stable plasmid inheritance protein (F leading maintenance protein). P46878[U]+(NOG15093[S]) Hypothetical protein yqgC. P41068[U]+(NOG15001[S]) TraP protein. P36937[U]+(NOG14717[S]) Protein kdpF. P76507[U]+(NOG14705[S]) Hypothetical protein yfdI. P45538[U]+(NOG14620[S]) Hypothetical protein yhfL. P26649[AO]+(NOG14602[S]) Glycogen synthesis protein glgS. Q46943[U]+(NOG14426[S]) Hypothetical protein yqeJ. P33230[U]+(NOG14357[S]) Hypothetical protein ydaC. P45581[U]+(NOG14350[S]) Hypothetical protein ycfK. P76508[U]+(NOG14350[S]) Hypothetical protein yfdL. P45764[U]+(NOG14264[S]) Hypothetical protein yhdU. P76521[U]+(NOG14263[S]) Hypothetical protein yfdY. P76105[U]+(NOG14154[S]) Hypothetical protein yncJ precursor. Q47013[U]+(NOG14152[S]) ElaD protein. P75987[HO]+(NOG14149[S]) Enhancing lycopene biosynthesis protein 1. P76156[U]+(NOG14112[S]) Hypothetical protein ydfO. P75988[U]+(NOG14112[S]) Hypothetical protein ycgX. P77598[U]+(NOG14112[S]) Hypothetical protein ybcV. P77274[U]+(NOG14108[S]) Hypothetical protein ydhZ. P76001[U]+(NOG14083[S]) Hypothetical protein ycgJ precursor. P76247[U]+(NOG14049[S]) Hypothetical protein yoaG. P37590[U]+(NOG13985[S]) Polymyxin B resistance protein pmrD. P76334[U]+(NOG13946[S]) Hypothetical protein yedR. P76195[U]+(NOG13931[S]) Hypothetical protein ydiH. P76439[U]+(NOG13885[S]) Hypothetical protein yeiS. P37656[U]+(NOG13856[S]) Hypothetical protein yhjR. P76275[U]+(NOG13730[S]) Hypothetical protein yebW. P27843[U]+(NOG13688[S]) Hypothetical protein yigG. P76328[U]+(NOG13616[S]) Hypothetical protein yodD. P21831[U]+(NOG13531[S]) Hypothetical protein yaiB. P18148[U]+(NOG13520[S]) PsiA protein. P46887[U]+(NOG13511[S]) Hypothetical protein yecH. P75943[U]+(NOG13491[S]) From BASES 1137539 to 1147976 (Section 99 of 400) of the complete genome (Section 99 of 400) (Orf, hypothetical protein). P76211[J]+(NOG13474[S]) Cell division activator cedA. P76127[U]+(NOG13472[S]) Bdm protein (Biofilm-dependent modulation protein). P32686[U]+(NOG13440[S]) Hypothetical protein yjbE precursor. P76259[U]+(NOG13436[S]) Hypothetical protein yoaC. P39296[U]+(NOG13375[S]) Hypothetical protein yjfN. P77506[U]+(NOG13354[S]) Hypothetical protein ybdJ. P76308[U]+(NOG13330[S]) Hypothetical protein yecR. P75694[U]+(NOG13322[S]) Hypothetical protein yahO precursor. P39283[U]+(NOG13279[S]) Hypothetical protein yjeN. Q46924[U]+(NOG13251[S]) Hypothetical lipoprotein ygdI precursor. P38393[J]+(NOG13236[S]) Kil protein. P33229[C]+(NOG13199[S]) Restriction alleviation and modification enhancement protein. P39307[U]+(NOG13195[S]) Hypothetical protein yjfY precursor. P10031[U]+(NOG13188[S]) PsiB protein. P45765[U]+(NOG13116[S]) Hypothetical protein yhdV. P05702[U]+(NOG13092[S]) CcdA protein (LetA protein) (Protein H) (LynA). P76207[U]+(NOG13081[S]) Hypothetical protein ydiZ. P76184[U]+(NOG13063[S]) Hypothetical protein ydhI. P75953[U]+(NOG13060[S]) Hypothetical protein ycfR precursor. P77273[U]+(NOG13040[S]) Hypothetical protein yaiZ. P23856[U]+(NOG13033[S]) Phage shock protein D. P18033[U]+(NOG13030[S]) TraQ protein. P45750[U]+(NOG12901[S]) Hypothetical protein yrfA. P05703[U]+(NOG12900[S]) Cytotoxic protein ccdB (LetB protein) (Protein G) (LynB). P52107[U]+(NOG12832[S]) Putative curli production protein csgC precursor. P76520[U]+(NOG12812[S]) YfdX protein precursor. P76426[U]+(NOG12795[S]) Hypothetical protein yohN precursor. P32682[U]+(NOG12733[S]) Zinc resistance-associated protein precursor. P45956[U]+(NOG12719[S]) Hypothetical protein ygbF. P08321[U]+(NOG12715[S]) TraL protein. P27238[U]+(NOG12713[S]) Hypothetical protein yfeD. P36660[U]+(NOG12616[S]) Hypothetical protein yccD. P76196[U]+(NOG12587[S]) Hypothetical protein ydiL. P15033[U]+(NOG12544[S]) RacC protein. P75927[U]+(NOG12524[S]) Hypothetical protein yceP. Q46848[U]+(NOG12454[S]) Hypothetical protein yghW. P32700[U]+(NOG12449[S]) Hypothetical protein yjcB. Q47081[D]+(NOG12432[S]) Transcriptional activatory protein caiF. P75734[U]+(NOG12390[S]) Hypothetical lipoprotein ybfN precursor. P75803[U]+(NOG12388[S]) Hypothetical protein yliH. P04737[U]+(NOG12385[S]) Fimbrial protein precursor (Pilin). P76158[U]+(NOG12380[S]) Hypothetical protein ydfP precursor. P75758[U]+(NOG12374[S]) Hypothetical protein ybgS precursor. P76170[U]+(NOG12361[S]) Hypothetical protein ynfB precursor. P31058[U]+(NOG12351[S]) Hypothetical fimbrial-like protein yadC precursor. P77682[I]+(NOG12293[S]) Bactoprenol-linked glucose translocase homolog from prophage CPS-53. P76498[U]+(NOG12277[S]) Hypothetical protein yfcO precursor. Q47413[U]+(NOG12226[S]) Hypothetical protein ygaM. P77669[U]+(NOG12221[S]) Hypothetical protein yaiY. P76148[U]+(NOG12220[S]) Hypothetical protein yneG. P18006[U]+(NOG12160[S]) TrbI protein. P10026[U]+(NOG12133[S]) TraM protein. P75813[U]+(NOG12126[S]) Hypothetical protein ybjM. P19931[U]+(NOG12043[S]) Hydrogenase-1 operon protein hyaE. P76002[U]+(NOG11992[S]) Protein ycgK precursor. P03808[U]+(NOG11886[S]) ATP synthase protein I. P76573[U]+(NOG11851[S]) Hypothetical protein yfgI. Q9S4W7[U]+(NOG11827[S]) Putative antirestriction protein (YFGB protein). P52105[U]+(NOG11807[S]) Curli production assembly/transport component csgE precursor. P75773[U]+(NOG11736[S]) Hypothetical protein ybhQ. P31063[U]+(NOG11713[S]) Hypothetical lipoprotein yedD precursor. P41069[U]+(NOG11707[S]) TraV protein precursor. P28307[U]+(NOG11687[S]) Major curlin subunit precursor. P25738[U]+(NOG11668[S]) Acidic protein msyB. P77409[B]+(NOG11646[S]) PhsC protein homolog. P46122[U]+(NOG11641[S]) Hypothetical lipoprotein yajI precursor. P09153[U]+(NOG11538[S]) Tail fiber assembly protein homolog from lambdoid prophage e14. P45565[U]+(NOG11502[S]) Ais protein. P37183[U]+(NOG11459[S]) Hydrogenase-2 operon protein hybE. P52104[U]+(NOG11445[S]) Curli production assembly/transport component csgF precursor. P76238[U]+(NOG11406[S]) Hypothetical protein yeaK. P18035[B]+(NOG11399[S]) TrbB protein precursor. P22707[D]+(NOG11260[S]) Fertility inhibition protein (Conjugal transfer repressor). P16427[D]+(NOG11224[S]) Formate hydrogenlyase regulatory protein hycA. P18473[U]+(NOG11197[S]) Periplasmic protein trbC precursor. P76773[U]+(NOG11180[S]) Hypothetical protein yshA precursor. P39379[U]+(NOG11150[S]) Hypothetical protein yjiH. P41066[U]+(NOG11071[S]) TraK lipoprotein precursor. P77381[U]+(NOG11054[S]) Hypothetical J-domain protein ybeS. P77359[U]+(NOG11054[S]) Hypothetical J-domain protein ybeV. P77129[U]+(NOG11042[S]) Hypothetical protein ylbE. P77518[U]+(NOG11029[S]) Hypothetical protein ylbF. P77427[U]+(NOG11002[S]) Hypothetical protein ybeU. P18471[U]+(NOG10974[S]) TraU protein precursor. P15032[U]+(NOG10950[S]) Exodeoxyribonuclease VIII (EC 3.1.11.-) (EXO VIII). P14497[U]+(NOG10944[S]) TraF protein precursor. P32687[U]+(NOG10924[S]) Hypothetical lipoprotein yjbF precursor. P39295[U]+(NOG10920[S]) Hypothetical protein yjfM. P77723[U]+(NOG10885[S]) Hypothetical protein yaiV. P37180[B]+(NOG10820[S]) Probable Ni/Fe-hydrogenase 2 B-type cytochrome subunit. P71244[AHO]+(NOG10815[S]) Colanic acid biosynthesis protein wcaM. P37663[U]+(NOG10812[S]) Hypothetical protein yhjY. P76116[U]+(NOG10809[S]) Hypothetical protein yncE precursor. P27241[AHO]+(NOG10799[S]) Lipopolysaccharide core biosynthesis protein rfaZ. P39279[U]+(NOG10752[S]) Hypothetical protein yjeJ. P76621[U]+(NOG10746[S]) Hypothetical protein ygaT. P39391[U]+(NOG10737[S]) Hypothetical protein yjiT. P33340[U]+(NOG10727[S]) Hypothetical protein yehA precursor. P39365[I]+(NOG10690[S]) Putative phosphotransferase enzyme II, C component sgcC. P76162[U]+(NOG10663[S]) Hypothetical protein ydfU. P75715[U]+(NOG10662[S]) SfmH protein precursor. P18472[U]+(NOG10600[S]) TraW protein precursor. P32688[U]+(NOG10547[S]) Hypothetical protein yjbG precursor. P27301[C]+(NOG10530[S]) McrD protein. P76171[U]+(NOG10528[S]) Hypothetical protein ynfC. P41067[U]+(NOG10508[S]) TraB protein. P46021[U]+(NOG10463[S]) Hypothetical protein yrbL. P37659[U]+(NOG10456[S]) Hypothetical protein yhjU. P37657[U]+(NOG10443[S]) Hypothetical protein yhjS. P24082[U]+(NOG10407[S]) TraN protein precursor. P76101[U]+(NOG10315[S]) Hypothetical lipoprotein ydcL precursor. P31464[U]+(NOG10227[S]) Hypothetical protein yieE. P76657[U]+(NOG10187[S]) Hypothetical protein yqiJ. P46142[U]+(NOG10163[S]) Hypothetical protein yggM. P19381[U]+(NOG10157[S]) TrbH protein. P31455[U]+(NOG10123[S]) Hypothetical protein yidR. P08322[U]+(NOG10118[S]) TraE protein. P77627[U]+(NOG10115[S]) Hypothetical protein ybeR. P77335[U]+(NOG10103[S]) Hemolysin E, chromosomal (Hemolysis-inducing protein) (Silent hemolysin sheA) (Latent pore-forming 34 kDa haemolysin). P24238[U]+(NOG10027[S]) Hypothetical protein yebB. P31062[U]+(NOG09344[S]) Prophage QSR' DNA packaging protein NU1 homolog. P31061[U]+(NOG09344[S]) Prophage Qin DNA packaging protein NU1 homolog. P13979[U]+(NOG06396[S]) TraT complement resistance protein precursor. P18004[U]+(COG3451[N]) TraC protein. [cluster '2' has 1 of 186 proteins with EC-number annotated.] Cluster '82' (COG majority vote 'mixed', protein majority vote 'I', 18 proteins in cluster) P33593[I]+(NOG06404[S]) Nickel transport ATP-binding protein nikD. P16916[U]+(COG3209[M]) RhsA protein precursor. P16917[U]+(COG3209[M]) RhsB protein precursor. P16918[U]+(COG3209[M]) RhsC protein precursor. P16919[U]+(COG3209[M]) RhsD protein precursor. P77759[U]+(COG3209[M]) From BASES 522240 to 533123 (Section 46 of 400) of the complete genome (Section 46 of 400). P77779[U]+(COG3209[M]) Hypothetical protein ybfO. P32109[U]+(COG3209[M]) Hypothetical protein yibJ. P24211[U]+(COG3209[M]) RhsE protein. P77737[I]+(COG1124[P] [E]) Oligopeptide transport ATP-binding protein oppF. P33594[I]+(COG1124[P] [E]) Nickel transport ATP-binding protein nikE. P37313[I]+(COG1124[P] [E]) Dipeptide transport ATP-binding protein dppF. P77622[I]+(COG1124[P] [E]) Hypothetical ABC transporter ATP-binding protein yddO. P36637[I]+(COG1124[P] [E]) Peptide transport system ATP-binding protein sapF. P77268[I]+(COG0444[P] [E]) Hypothetical ABC transporter ATP-binding protein yddP. P36635[I]+(COG0444[P] [E]) Peptide transport system ATP-binding protein sapD. P37314[I]+(COG0444[P] [E]) Dipeptide transport ATP-binding protein dppD. P76027[I]+(COG0444[P] [E]) Oligopeptide transport ATP-binding protein oppD. [cluster '82' has 0 of 18 proteins with EC-number annotated.] Cluster '60' (COG majority vote 'mixed', protein majority vote 'mix', 15 proteins in cluster) P46478[U]+(NOG06952[S]) Hypothetical protein yhcR. P46480[U]+(COG2732[K]) Hypothetical protein yhcO. P32717[U]+(COG2015[Q]) Hypothetical protein yjcS. P52599[EI]+(COG1566[Q]) Multidrug resistance protein K. P76185[E]+(COG1566[Q]) Hypothetical protein ydhJ. P32716[EI]+(COG1566[Q]) Hypothetical protein yjcR. P32107[E]+(COG1566[Q]) Hypothetical protein yibH. P46482[E]+(COG1566[Q]) Hypothetical protein yhcQ. P37683[E]+(COG1566[Q]) Hypothetical protein yiaV precursor. P27303[EI]+(COG1566[Q]) Multidrug resistance protein A. P75870[U]+(COG1289[S]) Hypothetical protein yccS. P76186[U]+(COG1289[S]) Hypothetical protein ydhK. P46481[U]+(COG1289[S]) Hypothetical protein yhcP. P33011[U]+(COG1289[S]) Hypothetical protein yeeA. P45537[U]+(COG1289[S]) Hypothetical protein yhfK. [cluster '60' has 0 of 15 proteins with EC-number annotated.] Cluster '31' (COG majority vote 'mixed', protein majority vote 'U', 12 proteins in cluster) P39291[U]+(NOG07368[S]) Hypothetical protein yjfI. P39294[U]+(NOG07366[S]) Hypothetical protein yjfL. P25519[U]+(COG2262[R]) GTP-binding protein hflX. P25521[U]+(COG1923[R]) Hfq protein (Host factor-I protein) (HF-I) (HF-1). P75709[U]+(COG1585[N] [O]) Hypothetical protein ybbJ. P33222[U]+(COG0754[E]) Hypothetical protein yjfC. P24196[U]+(COG0754[E]) Hypothetical protein ygiC. P43675[U]+(COG0754[E]) Bifunctional glutathionylspermidine synthetase/amidase [Includes: Glutathionylspermidine synthase (EC 6.3.1.8) (Glutathione:spermidine ligase [ADP-forming]) (GSP synthetase); Glutathionylspermidine amidase (EC 3.5.1.78) (Glutathionylspermidine amidohydrolase [spermidine- forming]) (GSP amidase)]. P77367[U]+(COG0330[O]) Hypothetical protein ybbK. P25661[U]+(COG0330[O]) HflC protein (EC 3.4.-.-). P25662[U]+(COG0330[O]) HflK protein. P31806[U]+(COG0062[S] COG0063[G]) Hypothetical protein yjeF. [cluster '31' has 2 of 12 proteins with EC-number annotated.] Cluster '24' (COG majority vote 'unknown', protein majority vote 'U', 12 proteins in cluster) P42592[U]+(NOG16529[S]) Hypothetical protein ygjK precursor. P33349[U]+(NOG14944[S]) Hypothetical protein yehM. P37003[U]+(NOG08351[S]) Hypothetical protein ybfG. P33354[U]+(NOG06949[S]) Hypothetical lipoprotein yehR precursor. P33352[U]+(NOG05758[S]) Hypothetical protein yehP. P75869[U]+(COG3070[N]) Hypothetical protein yccR. P03818[U]+(COG2425[S]) Hypothetical protein yieM. Q46810[U]+(COG2068[R]) Hypothetical protein ygfJ. Q46808[U]+(COG1975[O]) Hypothetical protein yqeB. P77183[U]+(COG1975[O]) Hypothetical protein yagQ. P31473[U]+(COG0714[R]) Hypothetical protein yieN. P33348[U]+(COG0714[R]) Hypothetical protein yehL. [cluster '24' has 0 of 12 proteins with EC-number annotated.] Cluster '40' (COG majority vote 'unknown', protein majority vote 'U', 11 proteins in cluster) P52134[U]+(NOG19164[S]) Hypothetical protein ypjK precursor. P75676[U]+(NOG15146[S]) Hypothetical protein yafX. P52132[U]+(NOG10673[S]) Hypothetical protein yfjQ. P77206[U]+(NOG10673[S]) Hypothetical protein yafZ. P18005[U]+(NOG10673[S]) Hypothetical protein yubP. P76280[L]+(NOG08900[S]) Hypothetical protein yobB. Q9JMR6[U]+(NOG08280[S]) YebB protein (YdjA protein). P11164[D]+(NOG07489[S]) Flagellar transcriptional activator flhD. P52131[U]+(COG3596[R]) Hypothetical protein yfjP. P75678[U]+(COG3596[R]) Hypothetical protein ykfA. P76359[U]+(COG3596[R]) Hypothetical protein yeeP. [cluster '40' has 0 of 11 proteins with EC-number annotated.] Cluster '32' (COG majority vote 'unknown', protein majority vote 'U', 11 proteins in cluster) P11289[U]+(NOG16668[S]) Hypothetical protein yfiL (URF2). Q46835[U]+(NOG16268[S]) Hypothetical lipoprotein yghG precursor. P77657[U]+(NOG16099[S]) Hypothetical protein yagK. P37684[U]+(NOG13568[S]) Hypothetical protein yiaW. P32108[U]+(NOG13568[S]) Hypothetical protein yibI. Q46837[U]+(NOG08645[S]) Putative lipoprotein acfD homolog precursor. Q46833[I]+(COG3297[N]) Putative general secretion pathway protein L-type yghE. P45763[I]+(COG3297[N]) Probable general secretion pathway protein L. Q46832[I]+(COG3149[N]) Putative general secretion pathway protein M-type yghD. Q46834[I]+(COG3031[N]) Putative general secretion pathway protein C-type yghF precursor. P45757[I]+(COG3031[N]) Probable general secretion pathway protein C. [cluster '32' has 0 of 11 proteins with EC-number annotated.] Cluster '71' (COG majority vote 'metab', protein majority vote 'go_metab_others', 10 proteins in cluster) P45580[U]+(COG3027[S]) Hypothetical protein ygfE. Q46905[B]+(COG2440[C]) Ferredoxin-like protein ygcO. P31576[B]+(COG2440[C]) Ferredoxin-like protein. P77714[B]+(COG2440[C]) Ferredoxin-like protein ydiT. Q46908[B]+(COG2086[C]) Putative electron transfer flavoprotein subunit ygcR. P31573[B]+(COG2086[C]) FixA protein. P76201[B]+(COG2086[C]) Putative electron transfer flavoprotein subunit ydiQ. P77378[B]+(COG2025[C]) Putative electron transfer flavoprotein subunit ydiR. P31574[B]+(COG2025[C]) FixB protein. Q46907[B]+(COG2025[C]) Putative electron transfer flavoprotein subunit ygcQ. [cluster '71' has 0 of 10 proteins with EC-number annotated.] Cluster '48' (COG majority vote 'unknown', protein majority vote 'go_DNA_transcr', 9 proteins in cluster) Q00042[C]+(NOG09355[S]) Putative transposon gamma-delta 80.3 kDa protein (Transposon Tn1000 tnpX protein). P96329[U]+(NOG07428[S]) Phage T7 exclusion protein. Q00037[C]+(NOG04828[S] NOG14684[S]) Transposase for transposon gamma-delta (Transposon Tn1000 transposase). P06979[U]+(COG3318[R]) Hypothetical protein yecA. P03014[C]+(COG1961[L]) DNA-invertase from lambdoid prophage e14. P77698[C]+(COG1961[L]) Hypothetical protein ybcK. P77170[C]+(COG1961[L]) Putative DNA-invertase from lambdoid prophage Qin. P03012[C]+(COG1961[L]) Transposon gamma-delta resolvase (Transposon Tn1000 resolvase). P77574[C]+(COG1961[L]) Putative DNA-invertase from lambdoid prophage Rac. [cluster '48' has 0 of 9 proteins with EC-number annotated.] Cluster '45' (COG majority vote 'inf', protein majority vote 'mix', 9 proteins in cluster) P09184[CJ]+(NOG07577[S]) Very short patch repair protein (EC 3.1.-.-) (DNA mismatch endonuclease) (Vsr mismatch endonuclease) (V.EcoKDcm). P45571[U]+(COG2501[S]) Hypothetical protein ybcJ. P77567[L]+(COG2162[Q]) N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) (Arylhydroxamate N,O-acetyltransferase) (Arylamine N-acetyltransferase) (NAT102). P03016[CJK]+(COG1195[L]) DNA replication and repair protein recF. P00583[CJ]+(COG0592[L]) DNA polymerase III, beta chain (EC 2.7.7.7). P20082[CJ]+(COG0188[L]) Topoisomerase IV subunit A (EC 5.99.1.-). P09097[CJ]+(COG0188[L]) DNA gyrase subunit A (EC 5.99.1.3). P20083[CJ]+(COG0187[L]) Topoisomerase IV subunit B (EC 5.99.1.-). P06982[CJ]+(COG0187[L]) DNA gyrase subunit B (EC 5.99.1.3). [cluster '45' has 7 of 9 proteins with EC-number annotated.] Cluster '245' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 9 proteins in cluster) P39819[D]+(COG1278[K]) Cold shock-like protein cspF (CSP-F). P15277[D]+(COG1278[K]) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock protein) (CS7.4). P24245[CDJ]+(COG1278[K]) Cold shock-like protein cspD (CSP-D). P77605[D]+(COG1278[K]) Cold shock-like protein cspI (CPS-I). P36995[D]+(COG1278[K]) Cold shock-like protein cspB (CSP-B). P36996[D]+(COG1278[K]) Cold shock-like protein cspC (CSP-C). P36997[D]+(COG1278[K]) Cold shock-like protein cspE (CSP-E). Q47130[D]+(COG1278[K]) Cold shock-like protein cspG (CPS-G). P56253[D]+(COG1278[K]) Cold shock-like protein cspH (CSP-H). [cluster '245' has 0 of 9 proteins with EC-number annotated.] Cluster '100' (COG majority vote 'metab', protein majority vote 'I', 9 proteins in cluster) P31136[I]+(COG1177[E]) Putrescine transport system permease protein potI. P23859[I]+(COG1177[E]) Spermidine/putrescine transport system permease protein potC. P77505[I]+(COG1177[E]) Hypothetical ABC transporter permease protein ydcV. P77156[I]+(COG1176[E]) Hypothetical ABC transporter permease protein ydcU. P23860[I]+(COG1176[E]) Spermidine/putrescine transport system permease protein potB. P31135[I]+(COG1176[E]) Putrescine transport system permease protein potH. P23861[I]+(COG0687[E]) Spermidine/putrescine-binding periplasmic protein precursor (SPBP). P76108[I]+(COG0687[E]) Putative ABC transporter periplasmic binding protein ydcS precursor. P31133[I]+(COG0687[E]) Putrescine-binding periplasmic protein precursor. [cluster '100' has 0 of 9 proteins with EC-number annotated.] Cluster '81' (COG majority vote 'cell', protein majority vote 'I', 8 proteins in cluster) P06997[I]+(COG1613[P]) Sulfate-binding protein precursor (Sulfate starvation-induced protein 2) (SSI2). P16700[I]+(COG1613[P]) Thiosulfate-binding protein precursor. P16676[I]+(COG1118[P]) Sulfate/thiosulfate import ATP-binding protein cysA. P09833[I]+(COG1118[P]) Molybdenum transport ATP-binding protein modC. P37329[I]+(COG0725[P]) Molybdate-binding periplasmic protein precursor. P09834[I]+(COG0555[P]) Molybdenum transport system permease protein modB. P16701[I]+(COG0555[P]) Sulfate transport system permease protein cysT. P16702[I]+(COG0555[P]) Sulfate transport system permease protein cysW. [cluster '81' has 0 of 8 proteins with EC-number annotated.] Cluster '64' (COG majority vote 'unknown', protein majority vote 'U', 8 proteins in cluster) P76421[AKN]+(NOG05111[S]) Hypothetical protein yegX. P76402[U]+(COG3422[S]) Hypothetical protein yegP. P42621[U]+(COG3152[S]) Hypothetical protein yhaH. P42622[U]+(COG3152[S]) Hypothetical protein yhaI. P32161[U]+(COG3152[S]) Hypothetical protein yiiR. P42619[U]+(COG2259[S]) Hypothetical protein yqjF. P77751[U]+(COG2259[S]) Hypothetical protein yphA. P42620[U]+(COG0435[O]) Hypothetical protein yqjG. [cluster '64' has 0 of 8 proteins with EC-number annotated.] Cluster '55' (COG majority vote 'unknown', protein majority vote 'U', 8 proteins in cluster) P33227[U]+(NOG09879[S]) Side tail fiber protein homolog from lambdoid prophage e14 (Fragment). P75719[U]+(NOG08925[S]) Putative Rz endopeptidase from lambdoid prophage DLP12 (EC 3.4.-.-). P77551[U]+(NOG08925[S]) Putative Rz endopeptidase from lambdoid prophage Rac (EC 3.4.-.-) (Fragment). P37057[D]+(NOG08922[S]) Prophage P2 OGR protein. P17873[U]+(NOG07593[S]) Osmotically inducible lipoprotein B precursor. P76155[U]+(NOG05573[S]) Tail fiber assembly protein homolog from lambdoid prophage Qin. P77163[U]+(NOG05573[S]) Tail fiber assembly protein homolog from lambdoid prophage Rac. P77699[U]+(NOG05573[S]) Tail fiber assembly protein homolog from lambdoid prophage DLP12. [cluster '55' has 2 of 8 proteins with EC-number annotated.] Cluster '51' (COG majority vote 'mixed', protein majority vote 'U', 8 proteins in cluster) P77214[U]+(NOG08871[S]) Hypothetical protein cusX precursor. P38054[I]+(COG3696[P]) Putative cation efflux system protein cusA. P33012[U]+(COG3449[L]) DNA gyrase inhibitory protein (SbmC protein). Q46866[U]+(COG3449[L]) Hypothetical protein ygiV. P76279[U]+(COG2372[R]) Protein yobA precursor. P26648[U]+(COG2132[Q]) Protein sufI precursor. P36649[U]+(COG2132[Q]) Blue copper oxidase cueO precursor (Copper efflux oxidase). P76278[U]+(COG1276[P]) Hypothetical protein yebZ. [cluster '51' has 0 of 8 proteins with EC-number annotated.] Cluster '37' (COG majority vote 'metab', protein majority vote 'go_metab_others', 8 proteins in cluster) P00831[O]+(COG0712[C]) ATP synthase delta chain (EC 3.6.3.14). P00859[U]+(COG0711[C]) ATP synthase B chain (EC 3.6.3.14). P00844[U]+(COG0636[C]) ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein) (Dicyclohexylcarbodiimide-binding protein). P00855[U]+(COG0356[C]) ATP synthase A chain (EC 3.6.3.14) (Protein 6). P00832[O]+(COG0355[C]) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1 sector epsilon subunit). P00837[O]+(COG0224[C]) ATP synthase gamma chain (EC 3.6.3.14). P00822[O]+(COG0056[C]) ATP synthase alpha chain (EC 3.6.3.14). P00824[O]+(COG0055[C]) ATP synthase beta chain (EC 3.6.3.14). [cluster '37' has 8 of 8 proteins with EC-number annotated.] Cluster '157' (COG majority vote 'cell', protein majority vote 'U', 8 proteins in cluster) P23887[K]+(COG1528[P]) Ferritin 1. P52091[K]+(COG1528[P]) Ferritin-like protein 2. P46888[U]+(COG0589[T]) Hypothetical protein yecG. P39177[U]+(COG0589[T]) Unknown protein from 2D-page (Spots PR25/LM16/2D_000LR3). P37903[U]+(COG0589[T]) Unknown protein 2D_000B3L from 2D-page. P03807[U]+(COG0589[T]) Protein ydaA. P28242[U]+(COG0589[T]) Universal stress protein A. P32163[U]+(COG0589[T]) Hypothetical protein yiiT. [cluster '157' has 0 of 8 proteins with EC-number annotated.] Cluster '90' (COG majority vote 'unknown', protein majority vote 'U', 7 proteins in cluster) P56259[U]+(COG3692[S]) Hypothetical protein yifN. P23874[U]+(COG3550[R]) Protein hipA. P75997[U]+(COG3468[M]) From BASES 1220357 to 1232354 (Section 106 of 400) of the complete genome (Section 106 of 400). P45508[U]+(COG3468[M]) Hypothetical protein yfaL precursor. P77286[U]+(COG3468[M]) Hypothetical protein ydeU. Q9JMS3[U]+(COG3468[M]) YchA protein. Q9JMS5[EL]+(COG3468[M]) YcbB protein. [cluster '90' has 0 of 7 proteins with EC-number annotated.] Cluster '78' (COG majority vote 'mixed', protein majority vote 'mix', 7 proteins in cluster) P52644[U]+(COG3187[O]) Heat shock protein hslJ. P23911[H]+(COG1946[I]) Acyl-CoA thioesterase II (EC 3.1.2.-) (TEII). P24250[B]+(COG0778[C]) Protein ydjA. P75894[B]+(COG0778[C]) Putative NADH dehydrogenase/NAD(P)H nitroreductase ycdI (EC 1.-.-.-). P17117[B]+(COG0778[C]) Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) (Modulator of drug activity A). P38489[B]+(COG0778[C]) Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) (FMN-dependent nitroreductase) (Dihydropteridine reductase) (EC 1.6.99.7). P30855[DI]+(COG0642[T] COG0784[T] COG2198[T] COG3438[T]) Sensor protein evgS precursor (EC 2.7.3.-). [cluster '78' has 5 of 7 proteins with EC-number annotated.] Cluster '76' (COG majority vote 'metab', protein majority vote 'I', 7 proteins in cluster) P14177[I]+(COG2113[E]) Glycine betaine-binding periplasmic protein precursor. P33362[U]+(COG1732[M]) Hypothetical protein yehZ precursor. P14176[I]+(COG1174[E]) Glycine betaine/L-proline transport system permease protein proW. P33359[I]+(COG1174[E]) Hypothetical ABC transporter permease protein yehW. P33361[I]+(COG1174[E]) Hypothetical ABC transporter permease protein yehY. P33360[I]+(COG1125[E]) Hypothetical ABC transporter ATP-binding protein yehX. P14175[I]+(COG1125[E]) Glycine betaine/L-proline transport ATP-binding protein proV. [cluster '76' has 0 of 7 proteins with EC-number annotated.] Cluster '62' (COG majority vote 'mixed', protein majority vote 'mix', 7 proteins in cluster) Q46841[AO]+(NOG07257[S]) Hypothetical protein yghQ. P75826[U]+(COG2431[S]) Hypothetical protein ybjE. P75823[G]+(COG2008[E]) Low-specificity L-threonine aldolase (EC 4.1.2.5) (Low-specificity L- TA). P75825[B]+(COG1151[C]) Prismane protein homolog (Hybrid-cluster protein) (HCP). P39315[U]+(COG0702[G] [M]) Hypothetical protein ytfG. P75822[U]+(COG0702[G] [M]) Hypothetical protein ybjT. P45469[U]+(COG0702[G] [M]) Hypothetical protein yraR. [cluster '62' has 1 of 7 proteins with EC-number annotated.] Cluster '50' (COG majority vote 'cell', protein majority vote 'U', 7 proteins in cluster) P33357[U]+(COG3275[T]) Hypothetical protein yehU precursor. P76523[U]+(COG3275[T]) Hypothetical protein ypdA. P46719[U]+(COG3142[P]) Copper homeostasis protein cutC. P39313[U]+(COG2846[D]) Hypothetical protein ytfE. P77529[I]+(COG1823[R]) Hypothetical symporter ydjN. P33372[U]+(COG1380[R]) Hypothetical protein yohJ. P33373[U]+(COG1346[M]) Hypothetical protein yohK. [cluster '50' has 0 of 7 proteins with EC-number annotated.] Cluster '39' (COG majority vote 'unknown', protein majority vote 'U', 7 proteins in cluster) P76512[U]+(NOG15548[S]) Hypothetical protein yfdP. P76063[U]+(NOG14373[S]) Hypothetical protein ydaS precursor. P76062[D]+(NOG13916[S]) Rac prophage repressor. P76513[U]+(NOG13007[S]) Hypothetical protein yfdQ. Q46840[U]+(NOG10701[S]) Hypothetical protein yghO (Fragment). Q46865[U]+(NOG08302[S]) Hypothetical protein ygiU. P76514[U]+(NOG05451[S]) Hypothetical protein yfdR. [cluster '39' has 0 of 7 proteins with EC-number annotated.] Cluster '38' (COG majority vote 'unknown', protein majority vote 'U', 7 proteins in cluster) P37658[U]+(NOG14052[S]) Hypothetical protein yhjT. P76050[U]+(NOG13601[S]) Hypothetical protein ynaJ. P76179[U]+(NOG13493[S]) Hypothetical protein ydgT. P46131[U]+(NOG13412[S]) Hypothetical protein yccJ. P75759[U]+(NOG09859[S]) Hypothetical protein ybhT precursor. P32685[U]+(NOG07950[S]) Hypothetical protein yjbD. P23870[U]+(NOG06654[S]) Haemolysin expression modulating protein. [cluster '38' has 0 of 7 proteins with EC-number annotated.] Cluster '255' (COG majority vote 'metab', protein majority vote 'I', 7 proteins in cluster) P15993[I]+(COG1113[E]) Aromatic amino acid transport protein aroP (General aromatic amino acid permease). P24207[I]+(COG1113[E]) Phenylalanine-specific permease. P39312[I]+(COG1113[E]) D-serine/D-alanine/glycine transporter. P77610[I]+(COG1113[E]) L-asparagine permease (L-asparagine transport protein). P27837[I]+(COG1113[E]) Probable transport protein yifK. P77327[I]+(COG1113[E]) Proline-specific permease proY. P25527[I]+(COG1113[E]) GABA permease (4-amino butyrate transport carrier) (Gamma- aminobutyrate permease). [cluster '255' has 0 of 7 proteins with EC-number annotated.] Cluster '191' (COG majority vote 'metab', protein majority vote 'I', 7 proteins in cluster) P46858[AI]+(COG2610[G] [E]) Low-affinity gluconate transporter (Gluconate permease) (Gnt-I system). P39835[AI]+(COG2610[G] [E]) High-affinity gluconate transporter (Gluconate permease) (Gnt-I system). Q46892[I]+(COG2610[G] [E]) Hypothetical permease ygbN. P39344[AI]+(COG2610[G] [E]) Gnt-II system L-idonate transporter (L-Ido transporter). P39357[I]+(COG2610[G] [E]) Hypothetical permease yjhF. P39373[AI]+(COG2610[G] [E]) High-affinity gluconate transporter (Gluconate permease 3) (Gnt-III system). P08555[I]+(COG2610[G] [E]) DsdX permease. [cluster '191' has 0 of 7 proteins with EC-number annotated.] Cluster '141' (COG majority vote 'mixed', protein majority vote 'I', 7 proteins in cluster) P17583[I]+(COG2807[P]) Cyanate transport protein cynX. P76242[I]+(COG2807[P]) Hypothetical transport protein yeaN. P75693[I]+(COG1280[E]) Hypothetical protein yahN. P27846[I]+(COG1280[E]) Threonine efflux protein. P27847[I]+(COG1280[E]) Homoserine/homoserine lactone efflux protein. P38101[I]+(COG1280[E]) Hypothetical protein yfiK. P76249[I]+(COG1280[E]) Hypothetical protein yeaS. [cluster '141' has 0 of 7 proteins with EC-number annotated.] Cluster '123' (COG majority vote 'mixed', protein majority vote 'go_DNA_transcr', 7 proteins in cluster) P03856[CJ]+(NOG08785[S]) Replication initiation protein (REP protein) (Protein E) (F4 protein). P19768[C]+(COG2963[L]) Insertion element IS150 hypothetical 19.7 kDa protein (ORFA). P19776[C]+(COG2963[L]) Transposase insC for insertion element IS2A/D/F/H/I/K. P75679[C]+(COG2963[L]) Transposase insN for insertion sequence element IS911A. P77681[C]+(COG2963[L]) Transposase insE for insertion sequence IS3A/B/C/D/E/fA/fB. P39212[CD]+(COG2963[L]) Transposase insN for insertion sequence element IS911B. Q9JMT0[U]+(COG2963[L]) YbiA protein (IS2 orf1) (IS2, orf1) (Hypothetical 15.2 kDa protein). [cluster '123' has 0 of 7 proteins with EC-number annotated.] Cluster '114' (COG majority vote 'unknown', protein majority vote 'U', 7 proteins in cluster) P42626[U]+(COG3681[S]) Hypothetical protein yhaM. P39263[U]+(COG1288[S]) Hypothetical protein yfcC. P75896[U]+(COG0251[J]) Hypothetical protein ycdK. P76258[U]+(COG0251[J]) Hypothetical protein yoaB. P42631[U]+(COG0251[J]) TdcF protein. P39330[U]+(COG0251[J]) Protein yjgF. P39332[U]+(COG0251[J]) Hypothetical protein yjgH. [cluster '114' has 0 of 7 proteins with EC-number annotated.] Cluster '98' (COG majority vote 'unknown', protein majority vote 'U', 6 proteins in cluster) P75955[U]+(NOG08714[S]) Hypothetical protein ycfT. P76072[U]+(NOG04346[S]) Side tail fiber protein homolog from lambdoid prophage Rac. Q47151[U]+(COG0791[M]) Hypothetical lipoprotein yafL precursor. P77685[U]+(COG0791[M]) Lipoprotein spr precursor. P76190[U]+(COG0791[M]) Hypothetical protein ydhO precursor. P23898[U]+(COG0791[M]) Probable lipoprotein nlpC precursor (ORF-17). [cluster '98' has 0 of 6 proteins with EC-number annotated.] Cluster '65' (COG majority vote 'inf', protein majority vote 'U', 6 proteins in cluster) P14081[F]+(COG3276[J]) Selenocysteine-specific elongation factor (SelB translation factor). Q47150[U]+(COG3077[L]) DNA-damage-inducible protein J. P07007[U]+(COG3077[L]) RelB protein. Q47149[U]+(COG3041[S]) Hypothetical protein yafQ. P23328[FG]+(COG1921[E]) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) (Cysteinyl- tRNA(Sec) selenium transferase) (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec) synthase). P46849[U]+(COG0430[K]) RNA 3'-terminal phosphate cyclase (EC 6.5.1.4) (RNA-3'-phosphate cyclase) (RNA cyclase). [cluster '65' has 2 of 6 proteins with EC-number annotated.] Cluster '63' (COG majority vote 'inf', protein majority vote 'mix', 6 proteins in cluster) P15069[U]+(NOG10983[S]) TraH protein precursor. P33790[U]+(NOG10541[S]) TraG protein. P07648[C]+(COG1330[L]) Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) (Exodeoxyribonuclease V 125 kDa polypeptide). P08394[C]+(COG1074[L]) Exodeoxyribonuclease V beta chain (EC 3.1.11.5) (Exodeoxyribonuclease V 135 KDA polypeptide). P14565[U]+(COG0507[L]) TraI protein (DNA helicase I) (EC 3.6.1.-) [Contains: Trai* protein]. P04993[C]+(COG0507[L]) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (Exodeoxyribonuclease V 67 kDa polypeptide). [cluster '63' has 4 of 6 proteins with EC-number annotated.] Cluster '59' (COG majority vote 'unknown', protein majority vote 'mix', 6 proteins in cluster) P56548[U]+(NOG08602[S]) Entericidin A precursor. P56549[U]+(NOG08602[S]) Entericidin B precursor. P78285[AKN]+(NOG08516[S]) Probable lysozyme from lambdoid prophage DLP12 (EC 3.2.1.17) (Lysis protein) (Muramidase) (Endolysin). P18837[D]+(COG3423[K]) Sugar fermentation stimulation protein B (Ner-like protein). P75981[U]+(COG3299[S]) Hypothetical protein ymfP in lambdoid prophage e14 region. P37007[C]+(COG1425[L]) Hypothetical protein yagA. [cluster '59' has 1 of 6 proteins with EC-number annotated.] Cluster '58' (COG majority vote 'unknown', protein majority vote 'mix', 6 proteins in cluster) P31443[U]+(NOG12925[S]) Hypothetical protein yidF. P31444[U]+(NOG12122[S]) Hypothetical protein yidG. P46133[I]+(COG2978[H]) Aminobenzoyl-glutamate transport protein. P31445[U]+(COG2149[S]) Hypothetical protein yidH. P76052[EN]+(COG1473[R]) Aminobenzoyl-glutamate utilization protein B. P77357[EN]+(COG1473[R]) Aminobenzoyl-glutamate utilization protein A. [cluster '58' has 0 of 6 proteins with EC-number annotated.] Cluster '57' (COG majority vote 'unknown', protein majority vote 'mix', 6 proteins in cluster) P77658[U]+(NOG16147[S]) Hypothetical protein ynaA. P07904[CJ]+(NOG06630[S]) Primosomal protein I. P18389[U]+(COG3610[S]) Protein yjjB (Protein P-14). P39402[U]+(COG2966[S]) Hypothetical protein yjjP. P77546[U]+(COG1484[L]) Hypothetical protein ydaV. P07905[CJ]+(COG1484[L]) DNA replication protein dnaC. [cluster '57' has 0 of 6 proteins with EC-number annotated.] Cluster '53' (COG majority vote 'unknown', protein majority vote 'U', 6 proteins in cluster) P39377[A]+(NOG04352[S]) Isoaspartyl dipeptidase (EC 3.4.19.-). P39382[U]+(COG3204[S]) Hypothetical protein yjiK. P39385[U]+(COG2733[S]) Hypothetical protein yjiN. P39383[U]+(COG1924[I]) Hypothetical protein yjiL. P39384[U]+(COG1775[E]) Hypothetical protein yjiM. P77307[U]+(COG0390[R]) Hypothetical protein ybbM. [cluster '53' has 1 of 6 proteins with EC-number annotated.] Cluster '49' (COG majority vote 'metab', protein majority vote 'go_metab_others', 6 proteins in cluster) P77223[B]+(COG2878[C]) Electron transport complex protein rnfB. P77285[B]+(COG2869[C]) Electron transport complex protein rnfG. P76181[B]+(COG2209[C]) Electron transport complex protein rnfA. P76182[BI]+(COG1805[C]) Electron transport complex protein rnfD. P77611[BL]+(COG1726[C]) Electron transport complex protein rnfC. P77179[B]+(COG1347[C]) Electron transport complex protein rnfE. [cluster '49' has 0 of 6 proteins with EC-number annotated.] Cluster '253' (COG majority vote 'metab', protein majority vote 'I', 6 proteins in cluster) P41076[I]+(COG1126[E]) Glutamate/aspartate transport ATP-binding protein gltL. P10346[I]+(COG1126[E]) Glutamine transport ATP-binding protein glnQ. P30858[I]+(COG1126[E]) Arginine transport ATP-binding protein artP. P45769[I]+(COG1126[E]) Hypothetical amino-acid ABC transporter ATP-binding protein yhdZ. P37774[I]+(COG1126[E]) Hypothetical amino-acid ABC transporter ATP-binding protein yecC. P07109[I]+(COG1126[E]) Histidine transport ATP-binding protein hisP. [cluster '253' has 0 of 6 proteins with EC-number annotated.] Cluster '203' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 6 proteins in cluster) P30845[L]+(COG2194[R]) Hypothetical protein yjdB. P39349[L]+(COG2194[R]) Hypothetical protein yjgX precursor. P32678[L]+(COG2194[R]) Protein yijP. P42640[L]+(COG2194[R]) Outer-membrane protein yhbX precursor. P37661[L]+(COG2194[R]) Membrane-protein yhjW. P75785[L]+(COG2194[R]) Hypothetical protein ybiP. [cluster '203' has 0 of 6 proteins with EC-number annotated.] Cluster '200' (COG majority vote 'metab', protein majority vote 'I', 6 proteins in cluster) P33780[I]+(COG2233[F]) Uracil permease (Uracil transporter). Q46815[I]+(COG2233[F]) Putative purine permease ygfO. Q46821[I]+(COG2233[F]) Putative purine permease ygfU. P75892[I]+(COG2233[F]) Putative purine permease ycdG. P27432[I]+(COG2233[F]) Putative purine permease yicE. P77328[I]+(COG2233[F]) Putative purine permease ybbY. [cluster '200' has 0 of 6 proteins with EC-number annotated.] Cluster '146' (COG majority vote 'mixed', protein majority vote 'I', 6 proteins in cluster) P10384[IK]+(COG2067[I]) Long-chain fatty acid transport protein precursor (Outer membrane FADL protein) (Outer membrane flp protein). P37624[I]+(COG0842[R] COG1131[Q]) Hypothetical ABC transporter ATP-binding protein yhiH. P75774[I]+(COG0842[R]) Hypothetical protein ybhR. P75775[U]+(COG0842[R]) Hypothetical protein ybhS. P36880[I]+(COG0842[R]) Hypothetical protein yadH. P31993[I]+(COG0842[R]) Hypothetical protein yhhJ. [cluster '146' has 0 of 6 proteins with EC-number annotated.] Cluster '112' (COG majority vote 'unknown', protein majority vote 'U', 6 proteins in cluster) P76344[U]+(COG3443[R]) Hypothetical protein yodA. P11666[U]+(COG0668[M]) Hypothetical protein yggB. P77253[U]+(COG0668[M]) Hypothetical protein ynaI. P75783[U]+(COG0668[M]) Hypothetical protein ybiO. P39455[U]+(COG0668[M]) Hypothetical protein ybdG. P39179[U]+(COG0354[R]) Unknown protein from 2D-page (Spot PR51). [cluster '112' has 0 of 6 proteins with EC-number annotated.] Cluster '108' (COG majority vote 'unknown', protein majority vote 'U', 6 proteins in cluster) P31064[U]+(COG2391[R]) Hypothetical protein yedE. P33015[U]+(COG2391[R]) Hypothetical protein yeeE. P76318[U]+(COG2135[S]) Hypothetical protein yedK. P33014[U]+(COG0425[O]) Hypothetical protein yeeD. P31065[U]+(COG0425[O]) Hypothetical protein yedF. P37618[U]+(COG0425[O]) SirA protein. [cluster '108' has 0 of 6 proteins with EC-number annotated.] Cluster '106' (COG majority vote 'unknown', protein majority vote 'mix', 6 proteins in cluster) P75843[U]+(COG3214[S]) Hypothetical protein ycaQ. P75844[U]+(COG2835[S]) Protein ycaR. P23894[EN]+(COG0501[O]) Probable protease htpX (EC 3.4.24.-) (Heat shock protein htpX). P43674[EN]+(COG0501[O]) Putative metalloprotease ycaL (EC 3.4.24.-). P25894[EN]+(COG0501[O]) Putative metalloprotease yggG (EC 3.4.24.-). P76568[U]+(COG0457[R] COG0501[O]) Hypothetical protein yfgC precursor. [cluster '106' has 3 of 6 proteins with EC-number annotated.] Cluster '104' (COG majority vote 'cell', protein majority vote 'I', 6 proteins in cluster) Q47538[I]+(COG1116[P]) Taurine transport ATP-binding protein tauB. P38053[I]+(COG1116[P]) Putative aliphatic sulfonates transport ATP-binding protein ssuB. P75853[I]+(COG0715[P]) Putative aliphatic sulfonates binding protein precursor. Q47537[I]+(COG0715[P]) Taurine-binding periplasmic protein precursor (Sulfate starvation- induced protein 1) (SSI1). Q47539[I]+(COG0600[P]) Taurine transport system permease protein tauC. P75851[I]+(COG0600[P]) Putative aliphatic sulfonates transport permease protein ssuC. [cluster '104' has 0 of 6 proteins with EC-number annotated.] Cluster '99' (COG majority vote 'unknown', protein majority vote 'mix', 5 proteins in cluster) P75779[E]+(COG3128[S]) Hypothetical protein ybiX. P37595[EN]+(COG1446[E]) Putative L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase). P77234[U]+(COG0790[R]) Hypothetical protein ybeQ. P32713[U]+(COG0790[R]) Hypothetical protein yjcO precursor. P77296[U]+(COG0790[R]) Hypothetical protein ybeT. [cluster '99' has 1 of 5 proteins with EC-number annotated.] Cluster '96' (COG majority vote 'unknown', protein majority vote 'mix', 5 proteins in cluster) P75982[U]+(NOG09310[S]) Hypothetical protein ymfQ in lambdoid prophage e14 region precursor. P75978[U]+(NOG05982[S]) Hypothetical protein ymfN. P26365[AN]+(COG0860[M]) N-acetylmuramoyl-L-alanine amidase amiB precursor (EC 3.5.1.28). P36548[AN]+(COG0860[M]) Probable N-acetylmuramoyl-L-alanine amidase amiA precursor (EC 3.5.1.28). Q46929[AN]+(COG0860[M]) N-acetylmuramoyl-L-alanine amidase amiC precursor (EC 3.5.1.28). [cluster '96' has 3 of 5 proteins with EC-number annotated.] Cluster '83' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) P76223[U]+(NOG04832[S]) Protein ynjB. P76222[U]+(COG2128[S]) Hypothetical protein ynjA. P09030[C]+(COG0708[L]) Exodeoxyribonuclease III (EC 3.1.11.2) (Exonuclease III) (EXO III) (AP endonuclease VI). P76219[U]+(COG0398[S]) Hypothetical protein ydjX. P76221[U]+(COG0398[S]) Hypothetical protein ydjZ. [cluster '83' has 1 of 5 proteins with EC-number annotated.] Cluster '79' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) P42594[U]+(NOG08292[S]) Hypothetical protein ygjM. P42595[U]+(NOG08291[S]) Hypothetical protein ygjN. P21362[U]+(COG3685[S]) Protein yciF. P21363[U]+(COG3685[S]) Protein yciE. P23872[U]+(COG0657[I]) Acetyl esterase (EC 3.1.1.-). [cluster '79' has 1 of 5 proteins with EC-number annotated.] Cluster '73' (COG majority vote 'unknown', protein majority vote 'mix', 5 proteins in cluster) P76331[U]+(NOG14011[S]) Hypothetical protein yodC. P34210[EKN]+(NOG04209[S]) Outer membrane protease ompP precursor (EC 3.4.23.-). P09169[EN]+(NOG04209[S]) Protease VII precursor (EC 3.4.21.87) (Omptin) (Outer membrane protein 3B) (Protease A). P46125[U]+(COG2354[S]) Hypothetical protein yedI. P76130[U]+(COG1649[S]) Hypothetical lipoprotein yddW precursor. [cluster '73' has 2 of 5 proteins with EC-number annotated.] Cluster '61' (COG majority vote 'cell', protein majority vote 'I', 5 proteins in cluster) P75999[U]+(NOG14789[S]) ORF O243#4. P77739[U]+(COG3001[S]) Hypothetical protein yniA. P52648[I]+(COG1121[P]) High-affinity zinc uptake system ATP-binding protein znuC. P39832[I]+(COG1108[P]) High-affinity zinc uptake system membrane protein znuB. P39172[I]+(COG0803[P]) High-affinity zinc uptake system protein znuA precursor. [cluster '61' has 0 of 5 proteins with EC-number annotated.] Cluster '56' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) P27294[U]+(NOG13677[S]) Protein inaA. P31599[K]+(NOG10782[S]) Bacteriophage N4 adsorption protein B. P76462[U]+(NOG05367[S]) Hypothetical protein yfaP precursor. P76463[U]+(NOG05124[S]) Hypothetical protein yfaQ precursor. P17994[U]+(NOG04831[S]) Hypothetical protein yfaA. [cluster '56' has 0 of 5 proteins with EC-number annotated.] Cluster '54' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) P31665[U]+(NOG18209[S]) Hypothetical protein yadD. P76396[U]+(NOG14655[S]) Hypothetical protein yegL. P76395[U]+(NOG14060[S]) Hypothetical protein yegK. P76393[EL]+(NOG13009[S]) Hypothetical protein yegI. P08372[U]+(NOG12690[S]) Prepilin peptidase dependent protein C precursor. [cluster '54' has 0 of 5 proteins with EC-number annotated.] Cluster '284' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) P09548[U]+(COG0586[S]) DedA protein (DSG-1 protein). P30149[U]+(COG0586[S]) Hypothetical protein yabI. P42614[U]+(COG0586[S]) Hypothetical protein yqjA. P33196[U]+(COG0586[S]) Hypothetical protein yghB. P33366[U]+(COG0586[S]) Hypothetical protein yohD. [cluster '284' has 0 of 5 proteins with EC-number annotated.] Cluster '280' (COG majority vote 'cell', protein majority vote 'mix', 5 proteins in cluster) P23857[U]+(COG0607[P]) Phage shock protein E precursor. P55734[U]+(COG0607[P]) Hypothetical protein ygaP. P37688[U]+(COG0607[P]) Hypothetical protein yibN. P09390[AHLN]+(COG0607[P]) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1). P77718[O]+(COG0301[H] COG0607[P]) Thiamine biosynthesis protein thiI. [cluster '280' has 1 of 5 proteins with EC-number annotated.] Cluster '265' (COG majority vote 'cell', protein majority vote 'go_carbo_lipid', 5 proteins in cluster) P25742[AHO]+(COG0859[M]) Lipopolysaccharide core biosynthesis glycosyl transferase rfaQ (EC 2.-.-.-). P27242[AHO]+(COG0859[M]) Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56). P24173[AHO]+(COG0859[M]) Lipopolysaccharide heptosyltransferase-1 (EC 2.-.-.-). P76349[U]+(COG0859[M]) Hypothetical protein yeeL. P37692[AHO]+(COG0859[M]) ADP-heptose--LPS heptosyltransferase II (EC 2.-.-.-). [cluster '265' has 4 of 5 proteins with EC-number annotated.] Cluster '156' (COG majority vote 'mixed', protein majority vote 'I', 5 proteins in cluster) P32706[U]+(COG3162[S]) Hypothetical protein yjcH. P31448[I]+(COG0591[H] [R] [E]) Putative symporter yidK. P16256[I]+(COG0591[H] [R] [E]) Sodium/pantothenate symporter (Pantothenate permease). P07117[I]+(COG0591[H] [R] [E]) Sodium/proline symporter (Proline permease). P32705[I]+(COG0591[H] [R] [E]) Putative symporter yjcG. [cluster '156' has 0 of 5 proteins with EC-number annotated.] Cluster '153' (COG majority vote 'mixed', protein majority vote 'go_metab_others', 5 proteins in cluster) P31447[L]+(COG3119[P]) Putative sulfatase yidJ (EC 3.1.6.-). P77318[L]+(COG3119[P]) Putative sulfatase ydeN precursor (EC 3.1.6.-). P25549[L]+(COG3119[P]) Arylsulfatase (EC 3.1.6.1) (Aryl-sulfate sulphohydrolase). P25550[D]+(COG0641[R]) Putative arylsulfatase regulatory protein. P76134[U]+(COG0641[R]) Hypothetical protein ydeM. [cluster '153' has 3 of 5 proteins with EC-number annotated.] Cluster '147' (COG majority vote 'cell', protein majority vote 'mix', 5 proteins in cluster) P07021[U]+(COG2885[M]) Putative lipoprotein yfiB precursor. P37665[K]+(COG2885[M]) Hypothetical lipoprotein yiaD precursor. P02934[K]+(COG2885[M]) Outer membrane protein A precursor (Outer membrane protein II*). P07176[U]+(COG2885[M]) Peptidoglycan-associated lipoprotein precursor. P19935[I]+(COG0823[N]) TolB protein precursor. [cluster '147' has 0 of 5 proteins with EC-number annotated.] Cluster '138' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 5 proteins in cluster) P03827[C]+(COG3677[L]) Insertion element IS1 1/2/3/5/6 protein insA (IS1a/IS1b/IS1c/IS1d). P19767[C]+(COG3677[L]) Insertion element IS1 7 protein insA (IS1f). Q47302[C]+(COG1662[L]) Insertion element IS1 2/3 protein insB. P03830[C]+(COG1662[L]) Insertion element IS1 1/5/6 protein insB. P57998[C]+(COG1662[L]) Insertion element IS1 4 protein insB. [cluster '138' has 0 of 5 proteins with EC-number annotated.] Cluster '134' (COG majority vote 'mixed', protein majority vote 'go_carbo_lipid', 5 proteins in cluster) P76535[A]+(COG2103[R]) Protein yfeU. P77245[AD]+(COG1737[K]) Hypothetical protein yfeT. P37767[AD]+(COG1737[K]) Hypothetical protein yfhH. P46118[AD]+(COG1737[K]) Hex regulon repressor. P39266[AD]+(COG1737[K]) Protein rpiR (Als operon repressor). [cluster '134' has 0 of 5 proteins with EC-number annotated.] Cluster '125' (COG majority vote 'unknown', protein majority vote 'U', 5 proteins in cluster) P39336[U]+(NOG17257[S]) Hypothetical protein yjgL. P24225[U]+(COG2731[S]) Evolved beta-galactosidase beta-subunit. P39335[U]+(COG2731[S]) Protein yjgK. P45424[U]+(COG2731[S]) Hypothetical protein yhcH. P37673[U]+(COG2731[S]) Hypothetical protein yiaL. [cluster '125' has 0 of 5 proteins with EC-number annotated.] Cluster '124' (COG majority vote 'mixed', protein majority vote 'I', 5 proteins in cluster) P30865[U]+(COG3021[S]) Hypothetical protein yafD. P31438[I]+(COG2814[G]) Hypothetical protein yicM. P31122[I]+(COG2814[G]) Sugar efflux transporter. P23910[I]+(COG2814[G]) Protein araJ precursor. P77389[I]+(COG2814[G]) Hypothetical transport protein ydhP. [cluster '124' has 0 of 5 proteins with EC-number annotated.] Cluster '87' (COG majority vote 'inf', protein majority vote 'go_protein', 4 proteins in cluster) P00959[F]+(COG0073[R] COG0143[J]) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS). P42589[U]+(COG0073[R]) Hypothetical protein ygjH. P07395[F]+(COG0072[J] COG0073[R]) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS). P08312[F]+(COG0016[J]) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS). [cluster '87' has 3 of 4 proteins with EC-number annotated.] Cluster '77' (COG majority vote 'mixed', protein majority vote 'mix', 4 proteins in cluster) P39162[D]+(NOG07293[S]) Cation transport regulator chaB. P39163[I]+(COG3703[P]) Cation transport protein chaC. P39323[U]+(COG2105[S]) Hypothetical protein ytfP. P31441[AN]+(COG1001[F]) Probable adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase). [cluster '77' has 1 of 4 proteins with EC-number annotated.] Cluster '72' (COG majority vote 'unknown', protein majority vote 'U', 4 proteins in cluster) Q46858[U]+(NOG20266[S]) Hypothetical protein yqhG precursor. P76394[U]+(NOG15617[S]) Hypothetical protein yegJ. P76065[U]+(NOG15554[S]) Hypothetical protein ydaU. Q46856[L]+(COG1979[C]) Hypothetical oxidoreductase yqhD (EC 1.1.-.-). [cluster '72' has 1 of 4 proteins with EC-number annotated.] Cluster '70' (COG majority vote 'unknown', protein majority vote 'U', 4 proteins in cluster) P76109[U]+(NOG13951[S]) Hypothetical protein ydcX. P76110[U]+(NOG13670[S]) Hypothetical protein ydcY. P23850[U]+(NOG08911[S]) Hypothetical protein yhhA precursor (ORFQ). P36677[U]+(NOG08906[S]) Hypothetical protein yhdN. [cluster '70' has 0 of 4 proteins with EC-number annotated.] Cluster '293' (COG majority vote 'unknown', protein majority vote 'I', 4 proteins in cluster) P45535[I]+(COG0488[R]) Hypothetical ABC transporter ATP-binding protein yheS. P37797[I]+(COG0488[R]) ABC transporter ATP-binding protein yjjK. P43672[I]+(COG0488[R]) ABC transporter ATP-binding protein uup. P75790[I]+(COG0488[R]) Hypothetical ABC transporter ATP-binding protein ybiT. [cluster '293' has 0 of 4 proteins with EC-number annotated.] Cluster '276' (COG majority vote 'metab', protein majority vote 'go_metab_others', 4 proteins in cluster) P31456[BL]+(COG0644[C]) Hypothetical protein yidS precursor. Q46904[BL]+(COG0644[C]) Probable electron transfer flavoprotein-quinone oxidoreductase ygcN (EC 1.5.5.-). P31575[BL]+(COG0644[C]) FixC protein. P77337[BL]+(COG0644[C]) Probable electron transfer flavoprotein-quinone oxidoreductase ydiS (EC 1.5.5.-). [cluster '276' has 2 of 4 proteins with EC-number annotated.] Cluster '269' (COG majority vote 'cell', protein majority vote 'mix', 4 proteins in cluster) P02918[AEKN]+(COG0744[M]) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes: Penicillin- insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]. P02919[AEKN]+(COG0744[M]) Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein polymerase) [Includes: Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]. P46022[A]+(COG0744[M]) Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) (Monofunctional TGase). P76577[AEKN]+(COG0744[M]) Penicillin-binding protein 1C (PBP-1c) (PBP1c) [Includes: Penicillin- insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Transpeptidase-like module]. [cluster '269' has 4 of 4 proteins with EC-number annotated.] Cluster '261' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 4 proteins in cluster) P33999[L]+(COG1011[R]) Hypothetical protein yjjG. P23306[L]+(COG1011[R]) Hypothetical protein yigB. P32145[L]+(COG1011[R]) Hypothetical protein yihX. P45801[L]+(COG1011[R]) Hypothetical protein yrfG. [cluster '261' has 0 of 4 proteins with EC-number annotated.] Cluster '249' (COG majority vote 'mixed', protein majority vote 'go_DNA_transcr', 4 proteins in cluster) Q46802[D]+(COG1221[K] [T] COG2202[T] COG2203[T]) Hypothetical sigma-54-dependent transcriptional regulator ygeV. P77743[D]+(COG1221[K] [T]) Propionate catabolism operon regulatory protein. P37344[D]+(COG1221[K] [T]) Psp operon transcriptional activator. P38035[D]+(COG1221[K] [T]) Transcriptional regulatory protein rtcR. [cluster '249' has 0 of 4 proteins with EC-number annotated.] Cluster '237' (COG majority vote 'unknown', protein majority vote 'mix', 4 proteins in cluster) P39176[U]+(COG1376[S]) Protein erfK/srfK precursor. P76193[KN]+(COG1376[S]) Hypothetical protein ynhG precursor. P75789[U]+(COG1376[S]) Protein ybiS precursor. P75954[KN]+(COG1376[S]) Hypothetical protein ycfS precursor. [cluster '237' has 0 of 4 proteins with EC-number annotated.] Cluster '210' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 4 proteins in cluster) Q47685[C]+(COG2003[L]) Putative radC-like protein ykfG. P76362[C]+(COG2003[L]) Putative radC-like protein yeeS. P25531[C]+(COG2003[L]) DNA repair protein radC. P52140[C]+(COG2003[L]) Putative radC-like protein yfjY. [cluster '210' has 0 of 4 proteins with EC-number annotated.] Cluster '207' (COG majority vote 'cell', protein majority vote 'I', 4 proteins in cluster) P77412[I]+(COG2076[P]) Hypothetical protein ydgF. P23895[I]+(COG2076[P]) EmrE protein (Methyl viologen resistance protein C) (Ethidium resistance protein). P77670[I]+(COG2076[P]) Hypothetical protein ydgE. P30743[U]+(COG2076[P]) SugE protein. [cluster '207' has 0 of 4 proteins with EC-number annotated.] Cluster '152' (COG majority vote 'unknown', protein majority vote 'U', 4 proteins in cluster) P33667[U]+(COG2603[R]) Hypothetical protein ybbB. P45470[U]+(COG0693[R]) Hypothetical protein yhbO. Q46948[O]+(COG0693[R]) 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme. P31658[U]+(COG0693[R]) Protein yedU. [cluster '152' has 0 of 4 proteins with EC-number annotated.] Cluster '150' (COG majority vote 'cell', protein majority vote 'go_protein', 4 proteins in cluster) P05636[U]+(COG2967[P]) ApaG protein. P77241[E]+(COG0760[O]) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase D) (Rotamase D). P39159[E]+(COG0760[O]) Peptidyl-prolyl cis-trans isomerase C (EC 5.2.1.8) (PPIase C) (Rotamase C) (Parvulin). P21202[E]+(COG0760[O]) Survival protein surA precursor (Peptidyl-prolyl cis-trans isomerase surA) (EC 5.2.1.8) (PPIase) (Rotamase C). [cluster '150' has 3 of 4 proteins with EC-number annotated.] Cluster '149' (COG majority vote 'cell', protein majority vote 'mix', 4 proteins in cluster) O69415[EI]+(COG1826[N]) Sec-independent protein translocase protein tatB. O65938[EI]+(COG1826[N]) Sec-independent protein translocase protein tatA. P25895[EI]+(COG1826[N]) Sec-independent protein translocase protein tatE. P27857[EI]+(COG0805[N]) Sec-independent protein translocase protein tatC. [cluster '149' has 0 of 4 proteins with EC-number annotated.] Cluster '148' (COG majority vote 'cell', protein majority vote 'I', 4 proteins in cluster) P05829[I]+(COG0848[N]) TolR protein. P18784[I]+(COG0848[N]) Biopolymer transport exbD protein. P18783[I]+(COG0811[N]) Biopolymer transport exbB protein. P05828[I]+(COG0811[N]) TolQ protein. [cluster '148' has 0 of 4 proteins with EC-number annotated.] Cluster '144' (COG majority vote 'metab', protein majority vote 'U', 4 proteins in cluster) P40681[U]+(COG2017[G]) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase). P32139[U]+(COG2017[G]) Hypothetical protein yihR. P76584[U]+(COG2017[G]) Hypothetical protein yphB. P09148[U]+(COG1085[C]) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10). [cluster '144' has 2 of 4 proteins with EC-number annotated.] Cluster '143' (COG majority vote 'metab', protein majority vote 'I', 4 proteins in cluster) P31550[I]+(COG1840[H]) Thiamine-binding periplasmic protein precursor. P76224[I]+(COG1178[H]) Hypothetical ABC transporter permease protein ynjC. P31549[I]+(COG1178[H]) Thiamine transport system permease protein thiP. P75681[I]+(COG1178[H]) Putative ferric transport system permease protein afuB (Fragment). [cluster '143' has 0 of 4 proteins with EC-number annotated.] Cluster '137' (COG majority vote 'cell', protein majority vote 'U', 4 proteins in cluster) P39281[I]+(COG3040[M]) Outer membrane lipoprotein blc precursor. P46127[U]+(COG1680[M]) Penicillin-binding protein ampH. P77619[U]+(COG1680[M]) Hypothetical protein yfeW precursor. P00811[U]+(COG1680[M]) Beta-lactamase precursor (EC 3.5.2.6) (Cephalosporinase). [cluster '137' has 1 of 4 proteins with EC-number annotated.] Cluster '135' (COG majority vote 'mixed', protein majority vote 'U', 4 proteins in cluster) P75717[U]+(NOG09343[S]) Exonuclease (EC 3.1.11.3) (Fragment). P41039[U]+(COG1734[T]) Hypothetical protein ybiI. P41065[U]+(COG1734[T]) TraR protein. P18274[U]+(COG1734[T]) DnaK suppressor protein. [cluster '135' has 1 of 4 proteins with EC-number annotated.] Cluster '105' (COG majority vote 'unknown', protein majority vote 'U', 4 proteins in cluster) P76466[U]+(COG3234[S]) Hypothetical protein yfaT precursor. P76464[U]+(COG2373[R]) Hypothetical protein yfaS precursor. P76578[U]+(COG2373[R]) Hypothetical lipoprotein yfhM precursor. P15043[CK]+(COG0514[L]) ATP-dependent DNA helicase recQ (EC 3.6.1.-). [cluster '105' has 1 of 4 proteins with EC-number annotated.] Cluster '95' (COG majority vote 'mixed', protein majority vote 'mix', 3 proteins in cluster) P05050[C]+(COG3145[L]) Alkylated DNA repair protein alkB. P33944[O]+(COG1477[H]) Thiamine biosynthesis lipoprotein apbE precursor. P77775[U]+(COG1090[R]) Hypothetical protein yfcH. [cluster '95' has 0 of 3 proteins with EC-number annotated.] Cluster '93' (COG majority vote 'unknown', protein majority vote 'U', 3 proteins in cluster) P28696[U]+(NOG11929[S]) Hypothetical protein yaaI precursor. P75617[U]+(NOG07882[S]) Hypothetical protein yaaW. P28695[U]+(COG1584[R]) Hypothetical protein yaaH. [cluster '93' has 0 of 3 proteins with EC-number annotated.] Cluster '91' (COG majority vote 'unknown', protein majority vote 'go_DNA_transcr', 3 proteins in cluster) P75811[D]+(COG3226[S]) Hypothetical protein ybjK. P06993[D]+(COG2909[K]) MalT regulatory protein. P77213[U]+(COG2170[S]) Hypothetical protein ybdK. [cluster '91' has 0 of 3 proteins with EC-number annotated.] Cluster '88' (COG majority vote 'unknown', protein majority vote 'U', 3 proteins in cluster) Q47719[U]+(NOG15713[S]) Very hypothetical 15.1 kDa protein in intB-fecE intergenic region. P23840[U]+(NOG12094[S]) DNA-damage-inducible protein D. P39410[U]+(NOG11785[S]) Hypothetical protein yjjJ. [cluster '88' has 0 of 3 proteins with EC-number annotated.] Cluster '333' (COG majority vote 'cell', protein majority vote 'I', 3 proteins in cluster) P37019[I]+(COG0038[P]) Voltage-gated ClC-type chloride channel eriC. P76175[I]+(COG0038[P]) Putative chloride channel protein eriC-like. P76526[U]+(COG0038[P]) Hypothetical protein yfeO. [cluster '333' has 0 of 3 proteins with EC-number annotated.] Cluster '327' (COG majority vote 'metab', protein majority vote 'go_metab_others', 3 proteins in cluster) P31119[L]+(COG0204[I] COG0318[Q] [I]) AAS bifunctional protein [Includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-GPE acyltransferase); Acyl-acyl carrier protein synthetase (Acyl-ACP synthetase)]. P26647[HLO]+(COG0204[I]) 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT). P32129[L]+(COG0204[I]) Hypothetical protein yihG. [cluster '327' has 1 of 3 proteins with EC-number annotated.] Cluster '326' (COG majority vote 'inf', protein majority vote 'mix', 3 proteins in cluster) P15038[C]+(COG0210[L]) Helicase IV (EC 3.6.1.-) (75 kDa helicase). P09980[CJ]+(COG0210[L]) ATP-dependent DNA helicase rep (EC 3.6.1.-). P03018[CJK]+(COG0210[L]) DNA helicase II (EC 3.6.1.-). [cluster '326' has 3 of 3 proteins with EC-number annotated.] Cluster '321' (COG majority vote 'cell', protein majority vote 'mix', 3 proteins in cluster) P31137[EN]+(COG0265[O]) Protease degS precursor (EC 3.4.21.-). P39099[EN]+(COG0265[O]) Protease degQ precursor (EC 3.4.21.-). P09376[EN]+(COG0265[O]) Protease do precursor (EC 3.4.21.-). [cluster '321' has 3 of 3 proteins with EC-number annotated.] Cluster '295' (COG majority vote 'cell', protein majority vote 'go_cell_growth', 3 proteins in cluster) P03819[IK]+(COG0475[P] COG1226[P]) Glutathione-regulated potassium-efflux system protein kefC (K(+)/H(+) antiporter). P39830[K]+(COG0475[P] COG1226[P]) Hypothetical protein ybaL. P45522[IK]+(COG0475[P] COG1226[P]) Glutathione-regulated potassium-efflux system protein kefB (K(+)/H(+) antiporter) (NEM-activatable K+/H+ antiporter). [cluster '295' has 0 of 3 proteins with EC-number annotated.] Cluster '277' (COG majority vote 'metab', protein majority vote 'go_metab_others', 3 proteins in cluster) P75863[B]+(COG0633[C] COG3217[R]) Hypothetical protein ycbX. P37910[B]+(COG0633[C]) Hypothetical ferredoxin-like protein yfaE. P25528[B]+(COG0633[C]) Ferredoxin, 2Fe-2S. [cluster '277' has 0 of 3 proteins with EC-number annotated.] Cluster '271' (COG majority vote 'cell', protein majority vote 'go_metab_others', 3 proteins in cluster) Q47414[B]+(COG0695[O]) Glutaredoxin-like protein nrdH. P00277[BO]+(COG0695[O]) Glutaredoxin 1 (Grx1). P37687[BO]+(COG0695[O]) Glutaredoxin 3 (Grx3). [cluster '271' has 0 of 3 proteins with EC-number annotated.] Cluster '264' (COG majority vote 'cell', protein majority vote 'U', 3 proteins in cluster) P76262[U]+(COG0861[P] COG1253[N]) Hypothetical protein yoaE. P42601[U]+(COG0861[P]) Hypothetical protein ygjT. Q46931[U]+(COG0861[P]) Hypothetical protein ygdQ. [cluster '264' has 0 of 3 proteins with EC-number annotated.] Cluster '239' (COG majority vote 'metab', protein majority vote 'U', 3 proteins in cluster) P39366[U]+(COG1363[G]) Putative sgc region protein sgcX. P32153[U]+(COG1363[G]) Putative frv operon protein frvX. P77585[U]+(COG1363[G]) Hypothetical protein ypdE. [cluster '239' has 0 of 3 proteins with EC-number annotated.] Cluster '212' (COG majority vote 'metab', protein majority vote 'go_carbo_lipid', 3 proteins in cluster) P33022[A]+(COG1957[F]) Hypothetical protein yeiK. P41409[A]+(COG1957[F]) Hypothetical protein ybeK. P22564[A]+(COG1957[F]) Hypothetical protein yaaF. [cluster '212' has 0 of 3 proteins with EC-number annotated.] Cluster '202' (COG majority vote 'cell', protein majority vote 'mix', 3 proteins in cluster) P39838[U]+(COG0642[T] COG2198[T]) Putative sensor-like histidine kinase yojN (EC 2.7.3.-). P30855[DI]+(COG0642[T] COG0784[T] COG2198[T] COG3438[T]) Sensor protein evgS precursor (EC 2.7.3.-). P26607[D]+(COG0642[T] COG0784[T] COG2198[T]) Sensor protein barA (EC 2.7.3.-). [cluster '202' has 3 of 3 proteins with EC-number annotated.] Cluster '197' (COG majority vote 'inf', protein majority vote 'go_cell_growth', 3 proteins in cluster) P55135[K]+(COG2265[J]) 23S rRNA (Uracil-5-)-methyltransferase rumA (EC 2.1.1.-) (23S rRNA(M- 5-U1939)-methyltransferase). P75817[K]+(COG2265[J]) Hypothetical RNA methyltransferase ybjF (EC 2.1.1.-). P23003[U]+(COG2265[J]) tRNA (Uracil-5-)-methyltransferase (EC 2.1.1.35) (tRNA(M-5-U54)- methyltransferase) (RUMT). [cluster '197' has 3 of 3 proteins with EC-number annotated.] Cluster '190' (COG majority vote 'metab', protein majority vote 'go_carbo_lipid', 3 proteins in cluster) P24240[A]+(COG2723[G]) 6-phospho-beta-glucosidase ascB (EC 3.2.1.86). Q46829[A]+(COG2723[G]) 6-phospho-beta-glucosidase bglA (EC 3.2.1.86). P11988[A]+(COG2723[G]) 6-phospho-beta-glucosidase bglB (EC 3.2.1.86). [cluster '190' has 3 of 3 proteins with EC-number annotated.] Cluster '183' (COG majority vote 'metab', protein majority vote 'go_metab_others', 3 proteins in cluster) P76345[B]+(COG3038[C]) Cytochrome b561 homolog 1. P75925[B]+(COG3038[C]) Cytochrome b561 homolog 2. P08732[B]+(COG3038[C]) Cytochrome b561 (Cytochrome b-561). [cluster '183' has 0 of 3 proteins with EC-number annotated.] Cluster '170' (COG majority vote 'cell', protein majority vote 'U', 3 proteins in cluster) P36659[U]+(COG2214[O]) Curved DNA-binding protein. P29209[U]+(COG0071[O]) 16 kDa heat shock protein A. P29210[U]+(COG0071[O]) 16 kDa heat shock protein B. [cluster '170' has 0 of 3 proteins with EC-number annotated.] Cluster '151' (COG majority vote 'mixed', protein majority vote 'U', 3 proteins in cluster) P39285[U]+(COG3264[M]) Hypothetical protein yjeP precursor. P77338[I]+(COG3264[M]) Potassium efflux system kefA (AefA protein). P14008[U]+(COG0730[R]) Hypothetical protein yfcA. [cluster '151' has 0 of 3 proteins with EC-number annotated.] Cluster '130' (COG majority vote 'metab', protein majority vote 'mix', 3 proteins in cluster) P77454[U]+(COG2066[E]) Probable glutaminase ybaS (EC 3.5.1.2). P77470[U]+(COG2066[E]) Probable glutaminase yneH (EC 3.5.1.2). Q47690[GM]+(COG2040[E]) Homocysteine S-methyltransferase (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase). [cluster '130' has 3 of 3 proteins with EC-number annotated.] Cluster '127' (COG majority vote 'unknown', protein majority vote 'U', 3 proteins in cluster) P32697[U]+(COG3700[R]) Class B acid phosphatase precursor (EC 3.1.3.2). P32699[U]+(COG2315[S]) Protein yjbR. P39454[U]+(COG2315[S]) Hypothetical protein ybdF. [cluster '127' has 1 of 3 proteins with EC-number annotated.] Cluster '110' (COG majority vote 'cell', protein majority vote 'I', 3 proteins in cluster) P31667[U]+(NOG18309[S]) Hypothetical protein yhgA. P33649[I]+(COG1918[P]) Ferrous iron transport protein A. P33650[I]+(COG0370[P]) Ferrous iron transport protein B. [cluster '110' has 0 of 3 proteins with EC-number annotated.] Cluster '107' (COG majority vote 'unknown', protein majority vote 'U', 3 proteins in cluster) P24206[E]+(COG2518[O]) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (Protein- beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase). Q57261[U]+(COG0585[S]) Protein ygbO. P36664[U]+(COG0496[R]) Acid phosphatase surE (EC 3.1.3.2) (Stationary-phase survival protein surE). [cluster '107' has 2 of 3 proteins with EC-number annotated.] Cluster '338' (COG majority vote 'inf', protein majority vote 'U', 2 proteins in cluster) P45748[U]+(COG0009[J]) Protein yrdC. P45847[U]+(COG0009[J]) Protein yciO. [cluster '338' has 0 of 2 proteins with EC-number annotated.] Cluster '337' (COG majority vote 'cell', protein majority vote 'mix', 2 proteins in cluster) P76007[IK]+(COG0025[P]) Putative Na(+)/H(+) exchanger ycgO. P32703[IK]+(COG0025[P]) Putative Na(+)/H(+) exchanger yjcE. [cluster '337' has 0 of 2 proteins with EC-number annotated.] Cluster '334' (COG majority vote 'cell', protein majority vote 'U', 2 proteins in cluster) P76055[U]+(COG0037[D]) Hypothetical protein ydaO. P52097[U]+(COG0037[D]) Putative cell cycle protein mesJ. [cluster '334' has 0 of 2 proteins with EC-number annotated.] Cluster '332' (COG majority vote 'metab', protein majority vote 'go_amino', 2 proteins in cluster) P28302[G]+(COG0076[E]) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta). P80063[G]+(COG0076[E]) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha). [cluster '332' has 2 of 2 proteins with EC-number annotated.] Cluster '322' (COG majority vote 'metab', protein majority vote 'mix', 2 proteins in cluster) P37095[EN]+(COG0260[E]) Peptidase B (EC 3.4.11.-) (Aminopeptidase B). P11648[EN]+(COG0260[E]) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) (Aminopeptidase A/I). [cluster '322' has 2 of 2 proteins with EC-number annotated.] Cluster '320' (COG majority vote 'inf', protein majority vote 'mix', 2 proteins in cluster) P50465[AC]+(COG0266[L]) Endonuclease VIII (EC 3.2.-.-). P05523[AC]+(COG0266[L]) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (FAPY-DNA glycosylase). [cluster '320' has 2 of 2 proteins with EC-number annotated.] Cluster '314' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P24231[U]+(COG0312[R]) PmbA protein (TldE protein). P46473[U]+(COG0312[R]) TldD protein. [cluster '314' has 0 of 2 proteins with EC-number annotated.] Cluster '311' (COG majority vote 'metab', protein majority vote 'mix', 2 proteins in cluster) P27298[EN]+(COG0339[E]) Oligopeptidase A (EC 3.4.24.70). P24171[EN]+(COG0339[E]) Peptidyl-dipeptidase dcp (EC 3.4.15.5) (Dipeptidyl carboxypeptidase). [cluster '311' has 2 of 2 proteins with EC-number annotated.] Cluster '310' (COG majority vote 'metab', protein majority vote 'mix', 2 proteins in cluster) P05826[DL]+(COG0347[E]) Nitrogen regulatory protein P-II 1. P38504[DL]+(COG0347[E]) Nitrogen regulatory protein P-II 2. [cluster '310' has 0 of 2 proteins with EC-number annotated.] Cluster '304' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 2 proteins in cluster) P04152[C]+(COG0389[L]) UmuC protein. Q47155[CJ]+(COG0389[L]) DNA polymerase IV (EC 2.7.7.7) (Pol IV). [cluster '304' has 1 of 2 proteins with EC-number annotated.] Cluster '297' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P09453[U]+(COG0456[R]) Ribosomal-protein-alanine acetyltransferase (EC 2.3.1.128) (Acetylating enzyme for N-terminal of ribosomal protein S18). P76539[U]+(COG0456[R]) Hypothetical protein ypeA. [cluster '297' has 1 of 2 proteins with EC-number annotated.] Cluster '292' (COG majority vote 'metab', protein majority vote 'mix', 2 proteins in cluster) P77444[GL]+(COG0520[E]) Selenocysteine lyase (EC 4.4.1.16) (Selenocysteine reductase) (Selenocysteine beta-lyase) (SCL). Q46925[GL]+(COG0520[E]) Cysteine sulfinate desulfinase (EC 4.4.1.-) (CSD). [cluster '292' has 2 of 2 proteins with EC-number annotated.] Cluster '291' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P24203[U]+(COG0523[R]) Hypothetical protein yjiA. P33030[U]+(COG0523[R]) Hypothetical protein yeiR. [cluster '291' has 0 of 2 proteins with EC-number annotated.] Cluster '288' (COG majority vote 'cell', protein majority vote 'go_protein', 2 proteins in cluster) P45523[E]+(COG0545[O]) FKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursor (EC 5.2.1.8) (PPiase) (Rotamase). P39311[E]+(COG0545[O]) FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPiase) (Rotamase) (FKBP22). [cluster '288' has 2 of 2 proteins with EC-number annotated.] Cluster '281' (COG majority vote 'cell', protein majority vote 'mix', 2 proteins in cluster) P76054[U]+(COG0598[P]) Hypothetical protein ydaN. P27841[I]+(COG0598[P]) Magnesium and cobalt transport protein corA. [cluster '281' has 0 of 2 proteins with EC-number annotated.] Cluster '279' (COG majority vote 'cell', protein majority vote 'mix', 2 proteins in cluster) P24213[EN]+(COG0616[N] [O]) Possible protease sohB (EC 3.4.21.-). P08395[EN]+(COG0616[N] [O]) Protease IV (EC 3.4.21.-) (Endopeptidase IV) (Signal peptide peptidase). [cluster '279' has 2 of 2 proteins with EC-number annotated.] Cluster '278' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P33018[U]+(COG0627[R]) Hypothetical protein yeiG. P51025[U]+(COG0627[R]) Hypothetical protein yaiM. [cluster '278' has 0 of 2 proteins with EC-number annotated.] Cluster '275' (COG majority vote 'cell', protein majority vote 'go_protein', 2 proteins in cluster) P23869[E]+(COG0652[O]) Peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) (PPIase B) (Rotamase B). P20752[E]+(COG0652[O]) Peptidyl-prolyl cis-trans isomerase A precursor (EC 5.2.1.8) (PPIase A) (Rotamase A) (Cyclophilin A). [cluster '275' has 2 of 2 proteins with EC-number annotated.] Cluster '270' (COG majority vote 'metab', protein majority vote 'go_metab_others', 2 proteins in cluster) P07024[N]+(COG0737[F]) Protein ushA precursor [Includes: UDP-sugar hydrolase (EC 3.6.1.45) (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (EC 3.1.3.5) (5'-NT)]. P08331[N]+(COG0737[F]) 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC 3.1.4.16). [cluster '270' has 2 of 2 proteins with EC-number annotated.] Cluster '268' (COG majority vote 'cell', protein majority vote 'mix', 2 proteins in cluster) P33929[EI]+(COG0755[O]) Heme exporter protein C (Cytochrome c-type biogenesis protein ccmC). P76599[U]+(COG0755[O]) Hypothetical protein ypjD. [cluster '268' has 0 of 2 proteins with EC-number annotated.] Cluster '263' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 2 proteins in cluster) Q9S4X2[C]+(COG0863[L]) Putative methyltransferase (YFEA protein). P28638[C]+(COG0863[L]) Hypothetical adenine-specific methylase yhdJ (EC 2.1.1.72). [cluster '263' has 1 of 2 proteins with EC-number annotated.] Cluster '254' (COG majority vote 'unknown', protein majority vote 'I', 2 proteins in cluster) P33916[I]+(COG1123[R]) Hypothetical ABC transporter ATP-binding protein yejF. P75796[I]+(COG1123[R]) Hypothetical ABC transporter ATP-binding protein yliA. [cluster '254' has 0 of 2 proteins with EC-number annotated.] Cluster '251' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) P77730[DO]+(COG1167[K] [E]) Hypothetical protein ydcR. P39389[DO]+(COG1167[K] [E]) Hypothetical protein yjiR. [cluster '251' has 0 of 2 proteins with EC-number annotated.] Cluster '244' (COG majority vote 'metab', protein majority vote 'I', 2 proteins in cluster) P37312[I]+(COG1301[C]) Aerobic C4-dicarboxylate transport protein. P21345[I]+(COG1301[C]) Proton glutamate symport protein (Glutamate-aspartate carrier protein). [cluster '244' has 0 of 2 proteins with EC-number annotated.] Cluster '241' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P32690[U]+(COG1357[S]) Hypothetical protein yjbI. P32704[U]+(COG1357[S]) Hypothetical protein yjcF. [cluster '241' has 0 of 2 proteins with EC-number annotated.] Cluster '240' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P76144[U]+(COG1359[S]) Hypothetical protein yneC. P40718[U]+(COG1359[S]) Protein ygiN. [cluster '240' has 0 of 2 proteins with EC-number annotated.] Cluster '232' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P36565[U]+(COG1434[S]) Hypothetical protein ycbC. P34209[U]+(COG1434[S]) Protein ydcF. [cluster '232' has 0 of 2 proteins with EC-number annotated.] Cluster '231' (COG majority vote 'metab', protein majority vote 'go_carbo_lipid', 2 proteins in cluster) P33363[A]+(COG1472[G]) Periplasmic beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase). P75949[AJ]+(COG1472[G]) Beta-hexosaminidase (EC 3.2.1.52) (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase). [cluster '231' has 2 of 2 proteins with EC-number annotated.] Cluster '228' (COG majority vote 'cell', protein majority vote 'U', 2 proteins in cluster) P77202[U]+(COG1651[O]) Thiol:disulfide interchange protein dsbG precursor. P21892[U]+(COG1651[O]) Thiol:disulfide interchange protein dsbC precursor. [cluster '228' has 0 of 2 proteins with EC-number annotated.] Cluster '226' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P46850[U]+(COG1690[S]) Protein rtcB. P75675[U]+(COG1690[S]) Hypothetical protein ykfJ. [cluster '226' has 0 of 2 proteins with EC-number annotated.] Cluster '218' (COG majority vote 'metab', protein majority vote 'U', 2 proteins in cluster) P23853[U]+(COG1842[I]) Phage shock protein A. P39292[U]+(COG1842[I]) Hypothetical protein yjfJ precursor. [cluster '218' has 0 of 2 proteins with EC-number annotated.] Cluster '217' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 2 proteins in cluster) P75893[B]+(COG1853[R]) Putative flavin:NADH reductase ycdH (EC 1.6.8.-). P76121[B]+(COG1853[R]) Hypothetical protein yddH. [cluster '217' has 1 of 2 proteins with EC-number annotated.] Cluster '215' (COG majority vote 'metab', protein majority vote 'go_metab_others', 2 proteins in cluster) P77258[B]+(COG1902[C]) N-ethylmaleimide reductase (EC 1.-.-.-) (N-ethylmaleimide reducing enzyme). P42593[B]+(COG0446[R] COG1902[C]) 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) (2,4-dienoyl coenzyme A reductase). [cluster '215' has 2 of 2 proteins with EC-number annotated.] Cluster '214' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P76424[U]+(COG1937[S]) Hypothetical protein yohL. P55756[U]+(COG1937[S]) Hypothetical protein yaiN. [cluster '214' has 0 of 2 proteins with EC-number annotated.] Cluster '201' (COG majority vote 'cell', protein majority vote 'go_metab_others', 2 proteins in cluster) Q59385[IL]+(COG2217[P]) Copper-transporting P-type ATPase (EC 3.6.3.4). P37617[L]+(COG2217[P]) Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5). [cluster '201' has 2 of 2 proteins with EC-number annotated.] Cluster '198' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P76011[U]+(COG2261[S]) Transglycosylase associated protein. P76246[U]+(COG2261[S]) Hypothetical protein yeaQ. [cluster '198' has 0 of 2 proteins with EC-number annotated.] Cluster '193' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 2 proteins in cluster) P77365[D]+(COG2378[K]) Hypothetical transcriptional regulator yafY. P52133[D]+(COG2378[K]) Hypothetical transcriptional regulator yfjR. [cluster '193' has 0 of 2 proteins with EC-number annotated.] Cluster '187' (COG majority vote 'cell', protein majority vote 'U', 2 proteins in cluster) P78067[U]+(COG2897[P]) Putative thiosulfate sulfurtransferase ynjE precursor (EC 2.8.1.1). P31142[U]+(COG2897[P]) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (Rhodanese-like protein) (MST). [cluster '187' has 2 of 2 proteins with EC-number annotated.] Cluster '171' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) P06282[HO]+(COG2134[I]) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26) (CDP-diacylglycerol phosphatidylhydrolase) (CDP-diglyceride hydrolase). P32159[U]+(COG0053[P]) Hypothetical protein yiiP. [cluster '171' has 1 of 2 proteins with EC-number annotated.] Cluster '165' (COG majority vote 'inf', protein majority vote 'mix', 2 proteins in cluster) P00582[CJ]+(COG0258[L] COG0749[L]) DNA polymerase I (EC 2.7.7.7) (POL I). P38506[U]+(COG0258[L]) Exodeoxyribonuclease IX (EC 3.1.11.-) (Exonuclease IX) (Exo IX). [cluster '165' has 2 of 2 proteins with EC-number annotated.] Cluster '164' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) P00926[G]+(COG3048[E]) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase) (DSD). P00647[U]+(COG0328[L]) Ribonuclease HI (EC 3.1.26.4) (RNase HI) (Ribonuclease H) (RNase H). [cluster '164' has 2 of 2 proteins with EC-number annotated.] Cluster '163' (COG majority vote 'mixed', protein majority vote 'go_DNA_transcr', 2 proteins in cluster) P06134[CD]+(COG0350[L] COG2169[F]) ADA regulatory protein (Regulatory protein of adaptative response) [Contains: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (O-6-methylguanine-DNA alkyltransferase)]. P09168[C]+(COG0350[L]) Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (6-O- methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA- alkyltransferase). [cluster '163' has 2 of 2 proteins with EC-number annotated.] Cluster '158' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) P75968[U]+(NOG19736[S]) Hypothetical protein ymfE. P07118[F]+(COG0525[J]) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS). [cluster '158' has 1 of 2 proteins with EC-number annotated.] Cluster '140' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P33666[U]+(NOG07446[S]) Hypothetical protein ydbA. P42597[U]+(COG1451[R]) Hypothetical protein ygjP. [cluster '140' has 0 of 2 proteins with EC-number annotated.] Cluster '136' (COG majority vote 'mixed', protein majority vote 'mix', 2 proteins in cluster) P75832[U]+(COG2127[S]) Protein yljA. P24202[C]+(COG1715[L]) Mrr restriction system protein (EcoKMrr). [cluster '136' has 0 of 2 proteins with EC-number annotated.] Cluster '131' (COG majority vote 'metab', protein majority vote 'go_metab_others', 2 proteins in cluster) O32583[L]+(COG2104[H]) ThiS protein. P30139[O]+(COG2022[F]) Thiazole biosynthesis protein thiG. [cluster '131' has 0 of 2 proteins with EC-number annotated.] Cluster '126' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P39273[U]+(COG3592[S]) Hypothetical protein yjdI. P39274[U]+(COG2388[R]) Hypothetical protein yjdJ. [cluster '126' has 0 of 2 proteins with EC-number annotated.] Cluster '122' (COG majority vote 'unknown', protein majority vote 'U', 2 proteins in cluster) P39394[U]+(NOG12196[S]) Hypothetical protein yjiW. P36682[U]+(NOG06543[S]) Hypothetical protein yacH. [cluster '122' has 0 of 2 proteins with EC-number annotated.] Cluster '339' (COG majority vote 'metab', protein majority vote 'mix', 1 proteins in cluster) HEMESYN2-PWY ENZYME: GSA_ECOLI P23893[GO] (COG0001[H]) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT). [cluster '339' has 1 of 1 proteins with EC-number annotated.] Cluster '335' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) PYR-RIBONUCMET-PWY ENZYME: UPP_ECOLI P25532[U] (COG0035[F]) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase). [cluster '335' has 1 of 1 proteins with EC-number annotated.] Cluster '331' (COG majority vote 'metab', protein majority vote 'go_amino', 1 proteins in cluster) HISTSYN-PWY ENZYME: HIS8_ECOLI P06986[GMO] (COG0079[E]) Histidinol-phosphate aminotransferase (EC 2.6.1.9) (Imidazole acetol- phosphate transaminase). [cluster '331' has 1 of 1 proteins with EC-number annotated.] Cluster '330' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 1 proteins in cluster) P04395[C]+(COG0122[L]) DNA-3-methyladenine glycosylase II (EC 3.2.2.21) (3-methyladenine-DNA glycosylase II, inducible) (TAG II) (DNA-3-methyladenine glycosidase II). [cluster '330' has 1 of 1 proteins with EC-number annotated.] Cluster '329' (COG majority vote 'metab', protein majority vote 'mix', 1 proteins in cluster) BIOTIN-SYNTHESIS-PWY ENZYME: BIOF_ECOLI P12998[GO] (COG0156[H]) 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS) (8-amino-7- ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase). [cluster '329' has 1 of 1 proteins with EC-number annotated.] Cluster '328' (COG majority vote 'metab', protein majority vote 'go_carbo_lipid', 1 proteins in cluster) GLUCONEO-PWY ENZYME: F16P_ECOLI P09200[A] (COG0158[G]) Fructose-1,6-bisphosphatase (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase). [cluster '328' has 1 of 1 proteins with EC-number annotated.] Cluster '325' (COG majority vote 'inf', protein majority vote 'U', 1 proteins in cluster) P33899[U]+(COG0219[J]) Hypothetical tRNA/rRNA methyltransferase yibK (EC 2.1.1.-). [cluster '325' has 1 of 1 proteins with EC-number annotated.] Cluster '324' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) PANTOSYN-PWY ENZYME: COAE_ECOLI P36679[O] (COG0237[H]) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase). [cluster '324' has 1 of 1 proteins with EC-number annotated.] Cluster '323' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) PLPSAL-PWY PYRIDOXSYN-PWY ENZYME: PDXH_ECOLI P28225[O] (COG0259[H]) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx). [cluster '323' has 1 of 1 proteins with EC-number annotated.] Cluster '316' (COG majority vote 'metab', protein majority vote 'go_amino', 1 proteins in cluster) DAPLYSINESYN-PWY ENZYME: DAPB_ECOLI P04036[GM] (COG0289[E]) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR). [cluster '316' has 1 of 1 proteins with EC-number annotated.] Cluster '315' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 1 proteins in cluster) P39831[L]+(COG0300[R]) Probable oxidoreductase ydfG (EC 1.-.-.-). [cluster '315' has 1 of 1 proteins with EC-number annotated.] Cluster '313' (COG majority vote 'cell', protein majority vote 'U', 1 proteins in cluster) P10413[U]+(COG0326[O]) Chaperone protein htpG (Heat shock protein htpG) (High temperature protein G) (Heat shock protein C62.5). [cluster '313' has 0 of 1 proteins with EC-number annotated.] Cluster '312' (COG majority vote 'inf', protein majority vote 'mix', 1 proteins in cluster) P00475[CJ]+(COG0338[L]) DNA adenine methylase (EC 2.1.1.72) (Deoxyadenosyl-methyltransferase) (DNA adenine methyltransferase) (M.EcoDam). [cluster '312' has 1 of 1 proteins with EC-number annotated.] Cluster '309' (COG majority vote 'inf', protein majority vote 'U', 1 proteins in cluster) P09155[U]+(COG0349[J]) Ribonuclease D (EC 3.1.26.3) (RNase D). [cluster '309' has 1 of 1 proteins with EC-number annotated.] Cluster '308' (COG majority vote 'metab', protein majority vote 'mix', 1 proteins in cluster) GLUCONSUPER-PWY NONOXIPENT-PWY OXIDATIVEPENT-PWY ENZYME: 6PGD_ECOLI P00350[AN] (COG0362[G]) 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44). [cluster '308' has 1 of 1 proteins with EC-number annotated.] Cluster '307' (COG majority vote 'cell', protein majority vote 'mix', 1 proteins in cluster) DETOX1-PWY ENZYME: CATA_ECOLI P13029[KL] (COG0376[P]) Peroxidase/catalase HPI (EC 1.11.1.6) (Catalase-peroxidase) (Hydroperoxidase I). [cluster '307' has 1 of 1 proteins with EC-number annotated.] Cluster '306' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 1 proteins in cluster) P37757[O]+(COG0384[R]) Hypothetical protein yddE (ORFB). [cluster '306' has 0 of 1 proteins with EC-number annotated.] Cluster '305' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P39836[U]+(COG0385[R]) Hypothetical protein yfeH. [cluster '305' has 0 of 1 proteins with EC-number annotated.] Cluster '303' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P76561[U]+(COG0400[R]) Hypothetical protein ypfH. [cluster '303' has 0 of 1 proteins with EC-number annotated.] Cluster '301' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) THISYN-PWY ENZYME: THIC_ECOLI P30136[O] (COG0422[H]) Thiamine biosynthesis protein thiC. [cluster '301' has 0 of 1 proteins with EC-number annotated.] Cluster '300' (COG majority vote 'metab', protein majority vote 'mix', 1 proteins in cluster) Q46877[BI]+(COG0426[C] COG1773[C]) Flavorubredoxin (FlRd). [cluster '300' has 0 of 1 proteins with EC-number annotated.] Cluster '299' (COG majority vote 'inf', protein majority vote 'mix', 1 proteins in cluster) P00955[FL]+(COG0441[J]) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS). [cluster '299' has 1 of 1 proteins with EC-number annotated.] Cluster '298' (COG majority vote 'cell', protein majority vote 'U', 1 proteins in cluster) P26427[U]+(COG0450[O]) Alkyl hydroperoxide reductase C22 protein (EC 1.6.4.-) (SCRP-23) (Sulfate starvation-induced protein 8) (SSI8). [cluster '298' has 1 of 1 proteins with EC-number annotated.] Cluster '296' (COG majority vote 'cell', protein majority vote 'go_cell_growth', 1 proteins in cluster) P06139[J]+(COG0459[O]) 60 kDa chaperonin (Protein Cpn60) (groEL protein). [cluster '296' has 0 of 1 proteins with EC-number annotated.] Cluster '294' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) P22783[U]+(COG0483[G]) Inositol-1-monophosphatase (EC 3.1.3.25) (IMPase) (Inositol-1- phosphatase) (I-1-Pase). [cluster '294' has 1 of 1 proteins with EC-number annotated.] Cluster '290' (COG majority vote 'cell', protein majority vote 'U', 1 proteins in cluster) P45394[U]+(COG0530[P]) Hypothetical protein yrbG. [cluster '290' has 0 of 1 proteins with EC-number annotated.] Cluster '289' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) P36950[U]+(COG0537[F] [G] [R]) HIT-like protein ycfF. [cluster '289' has 0 of 1 proteins with EC-number annotated.] Cluster '286' (COG majority vote 'cell', protein majority vote 'I', 1 proteins in cluster) P23868[I]+(COG0569[P]) Trk system potassium uptake protein trkA (K(+)-uptake protein trkA). [cluster '286' has 0 of 1 proteins with EC-number annotated.] Cluster '285' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) GLUCONEO-PWY ENZYME: PPSA_ECOLI P23538[L] (COG0574[G]) Phosphoenolpyruvate synthase (EC 2.7.9.2) (Pyruvate,water dikinase) (PEP synthase). [cluster '285' has 1 of 1 proteins with EC-number annotated.] Cluster '283' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) GLYCOLYSIS GLUCONEO-PWY ENZYME: GPMA_ECOLI P31217[ALN] (COG0588[G]) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM). [cluster '283' has 1 of 1 proteins with EC-number annotated.] Cluster '282' (COG majority vote 'mixed', protein majority vote 'U', 1 proteins in cluster) P30134[U]+(COG0590[F] [J]) Hypothetical protein yfhC. [cluster '282' has 0 of 1 proteins with EC-number annotated.] Cluster '274' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 1 proteins in cluster) P30849[B]+(COG0655[R]) Flavoprotein wrbA (Trp repressor binding protein). [cluster '274' has 0 of 1 proteins with EC-number annotated.] Cluster '273' (COG majority vote 'cell', protein majority vote 'I', 1 proteins in cluster) P40877[I]+(COG0659[P]) Putative sulfate transporter ychM. [cluster '273' has 0 of 1 proteins with EC-number annotated.] Cluster '272' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) P32165[O]+(COG0684[H]) S-adenosylmethionine:2-demethylmenaquinone methyltransferase (EC 2.1.-.-). [cluster '272' has 1 of 1 proteins with EC-number annotated.] Cluster '267' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 1 proteins in cluster) Q46920[O]+(COG0780[R] COG2904[S]) Hypothetical protein yqcD. [cluster '267' has 0 of 1 proteins with EC-number annotated.] Cluster '266' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) NUCMET2-PWY ENZYME: DEOD_ECOLI P09743[U] (COG0813[F]) Purine nucleoside phosphorylase (EC 2.4.2.1) (Inosine phosphorylase) (PNP). [cluster '266' has 1 of 1 proteins with EC-number annotated.] Cluster '262' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 1 proteins in cluster) P28910[D]+(COG0864[K]) Nickel responsive regulator. [cluster '262' has 0 of 1 proteins with EC-number annotated.] Cluster '260' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) Q46861[U]+(COG1032[C]) Hypothetical protein ygiQ. [cluster '260' has 0 of 1 proteins with EC-number annotated.] Cluster '258' (COG majority vote 'inf', protein majority vote 'U', 1 proteins in cluster) P33919[U]+(COG1061[L]) Hypothetical protein yejH. [cluster '258' has 0 of 1 proteins with EC-number annotated.] Cluster '256' (COG majority vote 'cell', protein majority vote 'mix', 1 proteins in cluster) P24554[CEN]+(COG1066[O]) DNA repair protein radA (DNA repair protein sms). [cluster '256' has 0 of 1 proteins with EC-number annotated.] Cluster '252' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) P25889[BO]+(COG0167[F] COG1146[C]) Hypothetical protein yeiA. [cluster '252' has 0 of 1 proteins with EC-number annotated.] Cluster '248' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) Q47012[U]+(COG1234[R]) Protein elaC. [cluster '248' has 0 of 1 proteins with EC-number annotated.] Cluster '247' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P76631[U]+(COG1238[S]) Hypothetical protein yqaA. [cluster '247' has 0 of 1 proteins with EC-number annotated.] Cluster '246' (COG majority vote 'cell', protein majority vote 'U', 1 proteins in cluster) P76112[U]+(COG1247[M]) Hypothetical acetyltransferase yncA (EC 2.3.1.-). [cluster '246' has 1 of 1 proteins with EC-number annotated.] Cluster '243' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 1 proteins in cluster) P75787[D]+(COG1321[K]) Transcriptional regulator mntR (Manganese transport regulator). [cluster '243' has 0 of 1 proteins with EC-number annotated.] Cluster '238' (COG majority vote 'cell', protein majority vote 'U', 1 proteins in cluster) PHOSLIPSYN-PWY ENZYME: MDOB_ECOLI P39401[U] (COG1368[M]) Phosphoglycerol transferase I (EC 2.7.8.20) (Phosphatidylglycerol-- membrane-oligosaccharide glycerophosphotransferase). [cluster '238' has 1 of 1 proteins with EC-number annotated.] Cluster '236' (COG majority vote 'mixed', protein majority vote 'mix', 1 proteins in cluster) P75914[CJ]+(COG1387[R] [E]) Hypothetical protein ycdX precursor. [cluster '236' has 0 of 1 proteins with EC-number annotated.] Cluster '235' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 1 proteins in cluster) P24200[C]+(COG1403[L]) 5-methylcytosine-specific restriction enzyme A (EC 3.1.21.-) (EcoKMcrA). [cluster '235' has 1 of 1 proteins with EC-number annotated.] Cluster '234' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P36650[U]+(COG1409[R]) Icc protein. [cluster '234' has 0 of 1 proteins with EC-number annotated.] Cluster '233' (COG majority vote 'metab', protein majority vote 'go_amino', 1 proteins in cluster) 1CMET2-PWY SAM-PWY HOMOSER-METSYN-PWY ENZYME: METH_ECOLI P13009[GMO] (COG0646[E] COG1410[E]) 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) (Methionine synthase, vitamin-B12 dependent isozyme) (MS). [cluster '233' has 1 of 1 proteins with EC-number annotated.] Cluster '230' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P76407[U]+(COG1597[R]) Hypothetical protein yegS. [cluster '230' has 0 of 1 proteins with EC-number annotated.] Cluster '229' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) P39288[B]+(COG1600[C]) Putative electron transport protein yjeS. [cluster '229' has 0 of 1 proteins with EC-number annotated.] Cluster '227' (COG majority vote 'unknown', protein majority vote 'mix', 1 proteins in cluster) P39169[KN]+(COG1652[S]) Unknown protein from 2D-page (Spot LM6). [cluster '227' has 0 of 1 proteins with EC-number annotated.] Cluster '225' (COG majority vote 'inf', protein majority vote 'U', 1 proteins in cluster) P39316[U]+(COG1733[K]) Hypothetical protein ytfH. [cluster '225' has 0 of 1 proteins with EC-number annotated.] Cluster '224' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P37619[U]+(COG1738[S]) Hypothetical protein yhhQ. [cluster '224' has 0 of 1 proteins with EC-number annotated.] Cluster '223' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P76169[U]+(COG1742[S]) Hypothetical protein ynfA. [cluster '223' has 0 of 1 proteins with EC-number annotated.] Cluster '222' (COG majority vote 'cell', protein majority vote 'go_cell_growth', 1 proteins in cluster) P23929[K]+(COG1764[O]) Osmotically inducible protein C. [cluster '222' has 0 of 1 proteins with EC-number annotated.] Cluster '221' (COG majority vote 'metab', protein majority vote 'mix', 1 proteins in cluster) P24555[EN]+(COG1770[E]) Protease II (EC 3.4.21.83) (Oligopeptidase B). [cluster '221' has 1 of 1 proteins with EC-number annotated.] Cluster '220' (COG majority vote 'cell', protein majority vote 'mix', 1 proteins in cluster) P03813[GL]+(COG1794[M]) Hypothetical protein ygeA. [cluster '220' has 0 of 1 proteins with EC-number annotated.] Cluster '219' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P37348[U]+(COG1801[S]) Hypothetical protein yecE. [cluster '219' has 0 of 1 proteins with EC-number annotated.] Cluster '216' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) PANTOSYN-PWY ENZYME: PANE_ECOLI P77728[O] (COG1893[H]) 2-dehydropantoate 2-reductase (EC 1.1.1.169) (Ketopantoate reductase) (KPA reductase) (KPR). [cluster '216' has 1 of 1 proteins with EC-number annotated.] Cluster '213' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 1 proteins in cluster) P31992[L]+(COG1942[R]) Hypothetical protein ydcE. [cluster '213' has 0 of 1 proteins with EC-number annotated.] Cluster '209' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P07008[U]+(COG2026[S]) Hypothetical relE protein. [cluster '209' has 0 of 1 proteins with EC-number annotated.] Cluster '208' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) P77455[L]+(COG1012[C] COG2030[I]) MaoC protein (Phenylacetic acid degradation protein paaZ). [cluster '208' has 0 of 1 proteins with EC-number annotated.] Cluster '206' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) COBALSYN-PWY ENZYME: BTUR_ECOLI P13040[O] (COG2109[H]) COB(I)alamin adenosyltransferase (EC 2.5.1.17) (Corrinoid adenosyltransferase). [cluster '206' has 1 of 1 proteins with EC-number annotated.] Cluster '205' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P75918[U]+(COG2110[S]) Hypothetical protein ymdB. [cluster '205' has 0 of 1 proteins with EC-number annotated.] Cluster '204' (COG majority vote 'metab', protein majority vote 'go_amino', 1 proteins in cluster) DAPLYSINESYN-PWY ENZYME: DAPD_ECOLI P03948[GM] (COG2171[E]) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase). [cluster '204' has 1 of 1 proteins with EC-number annotated.] Cluster '199' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P32157[U]+(COG2258[S]) Hypothetical protein yiiM. [cluster '199' has 0 of 1 proteins with EC-number annotated.] Cluster '196' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) P77770[U]+(COG2301[G]) Citrate lyase beta chain (EC 4.1.3.6) (Citrase) (Citryl-CoA lyase subunit) (EC 4.1.3.34). [cluster '196' has 1 of 1 proteins with EC-number annotated.] Cluster '195' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P31070[U]+(COG2350[S]) Protein yciI. [cluster '195' has 0 of 1 proteins with EC-number annotated.] Cluster '194' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) ANARESP1-PWY FERMENTATION-PWY ENZYME: CAPP_ECOLI P00864[L] (COG2352[C]) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase) (PEPC). [cluster '194' has 1 of 1 proteins with EC-number annotated.] Cluster '192' (COG majority vote 'unknown', protein majority vote 'go_DNA_transcr', 1 proteins in cluster) P37175[D]+(COG2606[S]) Protein ybaK. [cluster '192' has 0 of 1 proteins with EC-number annotated.] Cluster '189' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) P29679[U]+(COG2755[E]) Acyl-CoA thioesterase I precursor (EC 3.1.2.-) (Protease I) (Lysophospholipase L1) (EC 3.1.1.5) (Lecithinase B). [cluster '189' has 1 of 1 proteins with EC-number annotated.] Cluster '188' (COG majority vote 'inf', protein majority vote 'go_DNA_transcr', 1 proteins in cluster) P05100[C]+(COG2818[L]) DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) (TAG I) (DNA-3-methyladenine glycosidase I). [cluster '188' has 1 of 1 proteins with EC-number annotated.] Cluster '186' (COG majority vote 'unknown', protein majority vote 'I', 1 proteins in cluster) P27844[I]+(COG2962[R]) Protein rarD. [cluster '186' has 0 of 1 proteins with EC-number annotated.] Cluster '185' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P37052[U]+(COG3012[S]) Hypothetical protein ychJ. [cluster '185' has 0 of 1 proteins with EC-number annotated.] Cluster '184' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) Q47148[U]+(COG3034[S]) Hypothetical protein yafK precursor. [cluster '184' has 0 of 1 proteins with EC-number annotated.] Cluster '182' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P75782[U]+(COG3129[R]) Hypothetical protein ybiN. [cluster '182' has 0 of 1 proteins with EC-number annotated.] Cluster '181' (COG majority vote 'metab', protein majority vote 'U', 1 proteins in cluster) P76103[U]+(COG3135[Q]) Hypothetical protein ydcO. [cluster '181' has 0 of 1 proteins with EC-number annotated.] Cluster '180' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) Q47319[U]+(COG3148[S]) Hypothetical protein yfiP. [cluster '180' has 0 of 1 proteins with EC-number annotated.] Cluster '179' (COG majority vote 'unknown', protein majority vote 'go_metab_others', 1 proteins in cluster) P75863[B]+(COG0633[C] COG3217[R]) Hypothetical protein ycbX. [cluster '179' has 0 of 1 proteins with EC-number annotated.] Cluster '178' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P76188[U]+(COG3313[R]) Hypothetical protein ydhL precursor. [cluster '178' has 0 of 1 proteins with EC-number annotated.] Cluster '177' (COG majority vote 'metab', protein majority vote 'mix', 1 proteins in cluster) P32666[EN]+(COG3340[E]) Peptidase E (EC 3.4.13.21) (Alpha-aspartyl dipeptidase) (Asp-specific dipeptidase) (Dipeptidase E). [cluster '177' has 1 of 1 proteins with EC-number annotated.] Cluster '176' (COG majority vote 'unknown', protein majority vote 'U', 1 proteins in cluster) P77562[U]+(NOG04041[S]) Hypothetical protein yaiW. [cluster '176' has 0 of 1 proteins with EC-number annotated.] Cluster '175' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) HEMESYN2-PWY ENZYME: CYSG_ECOLI P11098[LO] (COG0007[H] COG1648[H]) Siroheme synthase [Includes: Uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM); Precorrin-2 oxidase (EC 1.-.-.-); Ferrochelatase (EC 4.99.1.-)]. [cluster '175' has 1 of 1 proteins with EC-number annotated.] Cluster '159' (COG majority vote 'metab', protein majority vote 'go_amino', 1 proteins in cluster) NUCMET2-PWY PURSYN-PWY ENZYME: GUAA_ECOLI P04079[G] (COG0518[F] COG0519[F]) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) (Glutamine amidotransferase) (GMP synthetase). [cluster '159' has 1 of 1 proteins with EC-number annotated.] Cluster '101' (COG majority vote 'metab', protein majority vote 'go_metab_others', 1 proteins in cluster) P52647[B]+(COG0674[C] COG1013[C] COG1014[C]) Probable pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-). [cluster '101' has 1 of 1 proteins with EC-number annotated.] Our version of E.coli has exactly 4357 proteins. Of these, 1192 proteins have at least one EC-number assigned in SwissProt. 3276 proteins are assigned to clusters. of these, 1088 proteins have an EC-number, 559 are in an EcoCyc pathway, and 515 have an EC-number *and* are member of an EcoCyc pathway. total count of associated non-enzymes is 2717. of these, 573 have an EC-number. of these again, 69 are associated because they are in the same COG as an annotated enzyme (by homology) category 'orthgroup_categories_enzymes': funccat J occurs 3 times. funccat K occurs 3 times. funccat L occurs 0 times. funccat D occurs 0 times. funccat O occurs 0 times. funccat M occurs 40 times. funccat N occurs 2 times. funccat P occurs 22 times. funccat T occurs 2 times. funccat C occurs 99 times. funccat G occurs 69 times. funccat E occurs 132 times. funccat F occurs 58 times. funccat H occurs 89 times. funccat I occurs 32 times. funccat Q occurs 7 times. funccat R occurs 19 times. funccat S occurs 54 times. category 'orthgroup_categories_nonenzymes_homologous': funccat J occurs 67 times. funccat K occurs 19 times. funccat L occurs 68 times. funccat D occurs 2 times. funccat O occurs 43 times. funccat M occurs 46 times. funccat N occurs 15 times. funccat P occurs 24 times. funccat T occurs 42 times. funccat C occurs 109 times. funccat G occurs 96 times. funccat E occurs 69 times. funccat F occurs 16 times. funccat H occurs 24 times. funccat I occurs 35 times. funccat Q occurs 12 times. funccat R occurs 55 times. funccat S occurs 40 times. category 'orthgroup_categories_nonenzymes_nonhomologous': funccat J occurs 98 times. funccat K occurs 80 times. funccat L occurs 87 times. funccat D occurs 29 times. funccat O occurs 69 times. funccat M occurs 95 times. funccat N occurs 89 times. funccat P occurs 143 times. funccat T occurs 54 times. funccat C occurs 54 times. funccat G occurs 71 times. funccat E occurs 93 times. funccat F occurs 20 times. funccat H occurs 37 times. funccat I occurs 17 times. funccat Q occurs 28 times. funccat R occurs 272 times. funccat S occurs 829 times. all orthgroups total: funccat J occurs 168 times. funccat K occurs 102 times. funccat L occurs 155 times. funccat D occurs 31 times. funccat O occurs 112 times. funccat M occurs 181 times. funccat N occurs 106 times. funccat P occurs 189 times. funccat T occurs 98 times. funccat C occurs 262 times. funccat G occurs 236 times. funccat E occurs 294 times. funccat F occurs 94 times. funccat H occurs 150 times. funccat I occurs 84 times. funccat Q occurs 47 times. funccat R occurs 346 times. funccat S occurs 923 times. category 'protein_categories_enzymes': funccat A occurs 121 times. funccat B occurs 75 times. funccat C occurs 5 times. funccat D occurs 1 times. funccat E occurs 3 times. funccat F occurs 3 times. funccat G occurs 138 times. funccat H occurs 57 times. funccat I occurs 3 times. funccat J occurs 13 times. funccat K occurs 7 times. funccat L occurs 156 times. funccat M occurs 98 times. funccat N occurs 63 times. funccat O occurs 164 times. funccat U occurs 87 times. category 'protein_categories_nonenzymes_homologous': funccat A occurs 91 times. funccat B occurs 85 times. funccat C occurs 60 times. funccat D occurs 14 times. funccat E occurs 82 times. funccat F occurs 31 times. funccat G occurs 29 times. funccat H occurs 42 times. funccat I occurs 55 times. funccat J occurs 33 times. funccat K occurs 21 times. funccat L occurs 102 times. funccat M occurs 10 times. funccat N occurs 75 times. funccat O occurs 72 times. funccat U occurs 162 times. category 'protein_categories_nonenzymes_nonhomologous': funccat A occurs 60 times. funccat B occurs 61 times. funccat C occurs 94 times. funccat D occurs 107 times. funccat E occurs 55 times. funccat F occurs 77 times. funccat G occurs 12 times. funccat H occurs 29 times. funccat I occurs 322 times. funccat J occurs 59 times. funccat K occurs 74 times. funccat L occurs 77 times. funccat M occurs 9 times. funccat N occurs 28 times. funccat O occurs 60 times. funccat U occurs 1188 times. all proteins total: funccat A occurs 272 times. funccat B occurs 221 times. funccat C occurs 159 times. funccat D occurs 122 times. funccat E occurs 140 times. funccat F occurs 111 times. funccat G occurs 179 times. funccat H occurs 128 times. funccat I occurs 380 times. funccat J occurs 105 times. funccat K occurs 102 times. funccat L occurs 335 times. funccat M occurs 117 times. funccat N occurs 166 times. funccat O occurs 296 times. funccat U occurs 1437 times.