BLAST2GENE

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What is BLAST2GENE?

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BLAST2GENE is a program that allows a detailed analysis of genomic regions containing completely or partially duplicated genes. From a BLAST (or BL2SEQ) comparison of a protein or nucleotide query sequence with any genomic region of interest, BLAST2GENE processed all high scoring pairwise alignments (HSPs) and provides the disposition of all independent copies along the genomic fragment. The results are provided in text and graphical outputs to allow an automatic and visual evaluation of the respective region.

Run BLAST2GENE

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METHOD 1.
Run from your BLAST (or BL2SEQ) output (takes a few seconds)

METHOD 2.
Run from BLAST with your sequence against human chromosome region (takes a few minutes)

Examples

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P450 protein subfamily 2C (human; RefSeq ID: NP_000760) on human chromosome 10 (from 95 Mb to 100 Mb).
Nuclear pore complex interacting protein (human; RefSeq ID: NP_008916) on human chromosome 16 (from 10 Mb to 20 Mb).
Glutathione S-transferase A2 (human; RefSeq ID: NP_000837) on human chromosome 6 (from 50Mb to 55 Mb).
RNA binding motif protein (human; RefSeq ID: NP_005049) on human chromosome Y (from 20Mb to 30Mb).

Contact

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The distribution version of BLAST2GENE is also available upon request from the authors.

For comments and questions, send a message to Mikita Suyama

Last modification: 20 April 2009