Publications of T. Doerks in the journal "Nucleic Acids Res".

Publications of T. Doerks in the journal "Nucleic Acids Res".

The individual publication lists here have to be considered only in the context of the Bork Group.
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2015 1 publication(s).
15.
SMART: recent updates, new developments and status in 2015.
Letunic I, Doerks T, Bork P
Nucleic Acids Res.
2015 Jan 28; 43: D257-60. Epub 2014 Oct 9; PubMed: 25300481.
Abstract + PDF
2014 1 publication(s).
14.
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.
Bock T, Chen WH, Ori A, Malik N, Silva-Martin N, Huerta-Cepas J, Powell S, Kastritis PL, Smyshlyaev G, Vonkova I, Kirkpatrick J, Doerks T, Nesme L, Baßler J, Kos M, Hurt E, Carlomagno T, Gavin AC, Barabas O, Müller CW, van Noort V, Beck M, Bork P
Nucleic Acids Res.
2014 Dec 16; 42(22): 13525-33. Epub 2014 Nov 14; PubMed: 25398899.
Abstract + PDF
2012 2 publication(s).
13.
SMART 7: recent updates to the protein domain annotation resource.
Letunic I, Doerks T, Bork P
Nucleic Acids Res.
2012 Jan 3; 40(Database issue): D302-5. Epub 2011 Nov 3; PubMed: 22053084.
Abstract + PDF
12.
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Powell S, Szklarczyk D, Trachana K, Roth A, Kuhn M, Muller J, Arnold R, Rattei T, Letunic I, Doerks T, Jensen LJ, von Mering C, Bork P
Nucleic Acids Res.
2012 Jan 1; 40: D284-9. Epub 2011 Nov 16; PubMed: 22096231.
Abstract + PDF
2011 1 publication(s).
11.
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C
Nucleic Acids Res.
2011 Jan 2; 39: D561-8. Epub 2010 Nov 2; PubMed: 21045058.
Abstract + PDF
2010 1 publication(s).
10.
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic Acids Res.
2010 Jan 9; 38: D190-5. Epub 2009 Nov 9; PubMed: 19900971.
Abstract + PDF
2009 2 publication(s).
9.
STRING 8--a global view on proteins and their functional interactions in 630 organisms.
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey CJ, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C
Nucleic Acids Res.
2009 Jan 21; 37: D412-6. Epub 2008 Oct 21; PubMed: 18940858.
Abstract + PDF
8.
SMART 6: recent updates and new developments.
Letunic I, Doerks T, Bork P
Nucleic Acids Res.
2009 Jan 31; 37: D229-32. Epub 2008 Oct 31; PubMed: 18978020.
Abstract + PDF
2008 1 publication(s).
7.
eggNOG: automated construction and annotation of orthologous groups of genes.
Nucleic Acids Res.
2008 Jan 16; 36: D250-4. Epub 2007 Oct 16; PubMed: 17942413.
Abstract + PDF
2007 1 publication(s).
6.
STRING 7--recent developments in the integration and prediction of protein interactions.
Nucleic Acids Res.
2007 Jan 10; 35: D358-62. Epub 2006 Nov 10; PubMed: 17098935.
Abstract + PDF
2004 2 publication(s).
5.
Functional clues for hypothetical proteins based on genomic context analysis in prokaryotes.
Doerks T, von Mering C, Bork P
Nucleic Acids Res.
2004; 32(21): 6321-6. PubMed: 15576358.
Abstract + PDF
4.
SMART 4.0: towards genomic data integration.
Nucleic Acids Res.
2004 Jan 1; 32(Database issue): D142-4. PubMed: 14681379.
Abstract + PDF
2002 1 publication(s).
3.
Recent improvements to the SMART domain-based sequence annotation resource.
Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P
Nucleic Acids Res.
2002 Jan 1; 30(1): 242-4. PubMed: 11752305.
Abstract + PDF
2000 2 publication(s).
2.
Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.
Dandekar T, Huynen MA, Regula JT, Ueberle B, Zimmermann CU, Andrade MA, Doerks T, Sánchez-Pulido L, Snel B, Suyama M, Yuan YP, Herrmann R, Bork P
Nucleic Acids Res.
2000 Sep 1; 28(17): 3278-88. PubMed: 10954595.
Abstract + PDF
1.
SMART: a web-based tool for the study of genetically mobile domains.
Schultz J, Copley RR, Doerks T, Ponting CP, Bork P
Nucleic Acids Res.
2000 Jan 1; 28(1): 231-4. PubMed: 10592234.
Abstract + PDF