PFAM _ SF _ BLAST ================== TIM ---- NPD 2e-07 IMPDH_C+IMPDH_N UPF0034 2e-07 oxidored_FMN+FMN_dh methyltransferase ----------------- Methyltransf_2 4e-04 CheR+Methyltransf_3 PCMT 7e-09 Methyltransf_3+RrnaAD UPF0020 4e-05 DNA_methylase+RrnaAD Met_10 2e-05 PARP_regulatory+Methyltransf_3 Methyltransf_4 3e-05 Methyltransf_3+RrnaAD Ubie_methyltran 5e-05 Methyltransf_3+RrnaAD Nol1_Nop2_Sun 1e-05 Methyltransf_3+RrnaAD Spermine_synth 3e-04 Methyltransf_3+RrnaAD P-loop ------- ATP-bind 1e-04 PRK+SRP54 MMR_HSR1 6e-06 recA+arf CoaE 0.001 adenylatekinase+SRP54 bac_dnaA 0.002 arf+UvrD-helicase CobA_CobO_BtuR 0.001 recA+UvrD-helicase FAD-NAD ------- Phytoene_dh 5e-06 pyr_redox+Monooxygenase Thi4 5e-05 GMC_oxred+FAD_binding_3 FMO-like 9e-07 pyr_redox+Monooxygenase DAO 1e-04 GDI+FAD_binding_3 nucl-bind-dom GIDA 1e-05 pyr_redox+GDI nadp-rossmann -------------- PDH 1e-07 IlvC+3HCDH Polysacc_synt_2 2e-22 Epimerase+adh_short_C2 NAD_Gly3P_dh 2e-06 IlvC+3HCDH DAO 0.002 3HCDH+adh_short_C2 nucl-bind-dom Isoflavone_redu 4e-04 THF_DHG_CYH+3Beta_HSD DUF108 5e-05 GFO_IDH_MocA+DapB ODC_Mu_crystall 4e-04 IlvC+3Beta_HSD P5CR 0.003 IlvC+3HCDH zincins -------- Fragilysin 0.003 Reprolysin+Peptidase_M10 glu_synt_ATP_bind ------------------ DUF201 2e-07 CPSase_L_chain+Dala_Dala_ligas abhydrolase ----------- Thioesterase 0.001 Peptidase_S9+abhydrolase Lipase_2 0.003 Peptidase_S9+abhydrolase nucl_transferase ---------------- tRNA-synt_1e 2e-07 tRNA-synt_1c+tRNA-synt_1 tRNA-synt_1f 5e-04 tRNA-synt_1c+tRNA-synt_1 crotonase ---------- DUF114 1e-05 CLP_protease+ECH DUF107 6e-08 CLP_protease+ECH PLP-dependent ------------- pyridoxal_deC 2e-05 Cys_Met_Meta_PP+SHMT GDC-P 5e-06 Cys_Met_Meta_PP+aminotran_2 phosphatase ----------- Phosphodiest 0.001 alk_phosphatase+Sulfatase thioredoxin-like ---------------- SCO1-SenC 0.003 AhpC-TSA+thiored aminotran_1_2 8e-72 ** PFAM_ SF_ HMM ** ==================== TIM --- Glyco_hydro_39 0.085 Glyco_hydro_1+cellulase Glyco_hydro_70 0.035 Glyco_hydro_10+alpha-amylase methyltransferases ------------------ Ubie_methyltran 0.0054 CheR+Methyltransf_3 P-Loop ------ MMR_HSR1 0.013 Guanylate_kin+ras FeoB 0.17 GTP_EFTU+arf FAD-NAD ------- Thi4 0.0074 GMC_oxred+FAD_binding_3 FMO-like 0.074 CHOD+FAD_binding_3 Phytoene_dh 0.011 pyr_redox+Monooxygenase DAO 0.064 GDI+GMC_oxred {Fold level link -> Nuc b. dom} GIDA 0.023 GDI+GMC_oxred CHOD 0.093 GDI+GMC_oxred nadp-rosmann ------------- Isoflavone_redu 0.013 3Beta_HSD+adh_short_C2 Polysacc_synt_2 5.5e-10 3Beta_HSD+adh_short_C2 Octopine_DH_N -> 0.12 GFO_IDH_MocA+3HCDH PDH 0.078 GFO_IDH_MocA+3HCDH Homoserine_dh 0.3 GFO_IDH_MocA+3HCDH DUF108 0.0052 GFO_IDH_MocA+3HCDH Acetylald_DH 0.17 GFO_IDH_MocA+DapB P5CR 0.16 GFO_IDH_MocA+DapB snake-toxin ------------ PLA2_inh 0.099 Activin_recp+UPAR_LY6 abhydrolase ----------- Thioesterase 0.00013 Lipase_3+abhydrolase Lipase_2 0.18 DLH+abhydrolase Ndr 0.023 Peptidase_S9+abhydrolase nucl_transferase --------------- tRNA-synt_1e 0.0007 tRNA-synt_1d+tRNA-synt_1 crotonase --------------- DUF114 0.27 CLP_protease+ECH DUF107 0.047 CLP_protease+ECH lambda-rep --------------- Sigma54_factors 0.0011 lacI+pou Transposase_12 0.17 lacI+pou winged3helix --------------- TFIIE_alpha 0.27 HTH_5+IRF cys-knot --------------- DAN 0.029 TGF-beta+Cys_knot ** PFAM_ FOLD _BLAST ** ======================= TIM ---- UPF0034 3e-06 oxidored_FMN+Glu_synthase NPD 2e-07 IMPDH_C+IMPDH_N ** PFAM_ FOLD _HMMER ** ======================= TIM ---- Glyco_hydro_70 0.18 oxidored_FMN+alpha-amylase Glyco_hydro_39 0.0032 Glyco_hydro_1+cellulase NPD 0.058 IMPDH_C+Glu_synthase Immunoglobulin --------------- K1 0.21 Neocarzinostat+ig [confirmed by FP]