1. The files with the file name like "mnr_in_chrX.mus_musculus" 
   show the coding Mono-Nucleotide-Repeats (cMNRs) results in the corresponding chromosome of the Mouse genome, Mus musculus.

  Format of the files: 

  Mouse Gene        	   Chromosome:Karyotype  Gene description
  ENSMUSG00000102693              1:A1    RIKEN cDNA 4933401J01 gene [Source:MGI Symbol;Acc:MGI:1918292]
  ENSMUSG00000064842              1:A1    predicted gene, 26206 [Source:MGI Symbol;Acc:MGI:5455983]
  ENSMUSG00000051951      Q5GH67  1:A1    X-linked Kx blood group related 4 [Source:MGI Symbol;Acc:MGI:3528744]

  Mouse transcript      MNR type  length  starting  Chromosome  Protein          strand
  ENSMUST00000070533      T       4       3670607 1       ENSMUSP00000070648      -
  ENSMUST00000070533      G       4       3671226 1       ENSMUSP00000070648      -
  ENSMUST00000070533      G       4       3671139 1       ENSMUSP00000070648      -
  ENSMUST00000070533      G       4       3671092 1       ENSMUSP00000070648      -


2. The files with the file name like "mm_to_hs_conserved.chrY"
   show the coding MNRs of mouse genome (mm) with their corresponding conservations in the human genome (hs)
 
The result files with detected cMNRs are based on the mouse genome & the human genome of ENSEMBL Rel 95_38.

Each line in a result file "mm_to_hs_conserved.chr*" contains a MNR hit in the mouse genome

ensembl id	Gene	karyotype	transcript	mnr	length	Genomic position	Chromosome	Protein	Strand	hs gene	chromosome start	end	strand	genomic sequence of hs gene	mm gene	chromosome  start	end	strand	ortholog type	position


3. The 3 pathways of Mus musculus,  KEGG, Rel 90.1, 20190501

 04310 Wnt signaling pathway - Mus musculus (mouse)      -> 160 genes
 04330 Notch signaling pathway - Mus musculus (mouse)    ->  49 genes
 04350 TGF-beta signaling pathway - Mus musculus (mouse) ->  93 genes

  3 result files:  

    mmu04310.list.gene_names.cMNRs 
    mmu04330.list.gene_names.cMNRs
    mmu04350.list.gene_names.cMNRs
 
  Format of the files (tab-separated):
 
  Gene                    Name    Chromosome:Karyotype  Gene Annotation 
  |                       |       |                    /
  v                       v       v                   v
  ENSMUSG00000022382      P28047  15:E2   wingless-type MMTV integration site family, member 7B [Source:MGI Symbol;Acc:MGI:98962]
  ENSMUST00000023015 C 6 85581461 15 ENSMUSP00000023015 -
  ^                  ^ ^ ^        ^  ^
  |                  | | |        |  |
  |               MNR| | position |  Protein
  Transcript      type length     Chromosome
 

Fri Sep 25 14:41:05 CEST 2020
  & 
Mon Sep 28 11:37:58 CEST 2020