Publications of Bork Group in the journal "Mol Syst Biol".

Publications of Bork Group in the journal "Mol Syst Biol".

Authors in this color are/were of Bork Group. [Altmetric off].
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2023 1 publication(s).
21.
Consistency across multi-omics layers in a drug-perturbed gut microbial community.
Wuyts S, Alves RJ, Zimmermann-Kogadeeva M, Nishijima S, Blasche S, Driessen M, Geyer PE, Hercog R, Kartal E, Maier L, Müller JB, Garcia Santamarina S, Schmidt TSB, Sevin DC, Telzerow A, Treit PV, Wenzel T, Typas A, Patil KR, Mann M, Kuhn M, Bork P
Mol Syst Biol.
2023 Sep 12; 19(9): e11525. PubMed: 37485738.
Abstract + PDF
2018 1 publication(s).
20.
Quantifying compartment-associated variations of protein abundance in proteomics data.
Parca L, Beck M, Bork P, Ori A
Mol Syst Biol.
2018 Jul 2; 14(7): e8131. PubMed: 29967062.
Abstract + PDF
2017 2 publication(s).
19.
Subspecies in the global human gut microbiome.
Mol Syst Biol.
2017 Dec 14; 13(12): 960. PubMed: 29242367.
Abstract + PDF
18.
Capturing protein communities by structural proteomics in a thermophilic eukaryote.
Kastritis PL, O'Reilly FJ, Bock T, Li YY, Rogon MZ, Buczak K, Romanov N, Betts MJ, Bui KH, Hagen WJ, Hennrich ML, Mackmull MT, Rappsilber J, Russell RB, Bork P, Beck M, Gavin AC
Mol Syst Biol.
2017 Jul 25; 13(7): 936. PubMed: 28743795.
Abstract + PDF
2015 2 publication(s).
17.
Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium.
Lluch-Senar M, Delgado J, Chen WH, Lloréns-Rico V, O'Reilly FJ, Wodke JA, Unal EB, Yus E, Martínez S, Nichols RJ, Ferrar T, Vivancos A, Schmeisky A, Stülke J, van Noort V, Gavin AC, Bork P, Serrano L
Mol Syst Biol.
2015 Jan 21; 11(1): 780. PubMed: 25609650.
Abstract + PDF
16.
Computational eco-systems biology in Tara Oceans: translating data into knowledge.
Sunagawa S, Karsenti E, Bowler C, Bork P
Mol Syst Biol.
2015 May 21; 11(5): 809. PubMed: 25999085.
Abstract + PDF
2014 1 publication(s).
15.
Potential of fecal microbiota for early-stage detection of colorectal cancer.
Zeller G, Tap J, Voigt AY, Sunagawa S, Kultima JR, Costea PI, Amiot A, Böhm J, Brunetti F, Habermann N, Hercog R, Koch M, Luciani A, Mende DR, Schneider MA, Schrotz-King P, Tournigand C, Tran Van Nhieu J, Yamada T, Zimmermann J, Benes V, Kloor M, Ulrich CM, von Knebel Doeberitz M, Sobhani I, Bork P
Mol Syst Biol.
2014 Nov 28; 10(11): 766. PubMed: 25432777.
Abstract + PDF
2013 4 publication(s).
14.
Evolution and functional cross-talk of protein post-translational modifications.
Beltrao P, Bork P, Krogan NJ, van Noort V
Mol Syst Biol.
2013; 9(1): 714. PubMed: 24366814.
Abstract + PDF
13.
Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.
Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, Runz H, Gavin AC, Pepperkok R, van Noort V, Bork P
Mol Syst Biol.
2013 Apr 30; 9: 662. PubMed: 23632384.
Abstract + PDF
12.
Systematic identification of proteins that elicit drug side effects.
Kuhn M, Al Banchaabouchi M, Campillos M, Jensen LJ, Gross C, Gavin AC, Bork P
Mol Syst Biol.
2013 Apr 30; 9: 663. PubMed: 23632385.
Abstract + PDF
11.
Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines.
Ori A, Banterle N, Iskar M, Andrés-Pons A, Escher C, Khanh Bui H, Sparks L, Solis-Mezarino V, Rinner O, Bork P, Lemke EA, Beck M
Mol Syst Biol.
2013 Mar 19; 9: 648. PubMed: 23511206.
Abstract + PDF
2012 4 publication(s).
10.
Deciphering a global network of functionally associated post-translational modifications.
Minguez P, Parca L, Diella F, Mende DR, Kumar R, Helmer-Citterich M, Gavin AC, van Noort V, Bork P
Mol Syst Biol.
2012 Jul 17; 8: 599. PubMed: 22806145.
Abstract + PDF
9.
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.
van Noort V, Seebacher J, Bader S, Mohammed S, Vonkova I, Betts MJ, Kühner S, Kumar R, Maier T, O'Flaherty M, Rybin V, Schmeisky A, Yus E, Stülke J, Serrano L, Russell RB, Heck AJ, Bork P, Gavin AC
Mol Syst Biol.
2012 Feb 28; 8: 571. PubMed: 22373819.
Abstract + PDF
8.
Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.
Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P
Mol Syst Biol.
2012 May 8; 8: 581. PubMed: 22569339.
Abstract + PDF
7.
Transcription start site associated RNAs in bacteria.
Yus E, Güell M, Vivancos AP, Chen WH, Lluch-Senar M, Delgado J, Claude Gavin A, Bork P, Serrano L
Mol Syst Biol.
2012 May 22; 8: 585. PubMed: 22617959.
Abstract + PDF
2011 1 publication(s).
6.
Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data.
Mol Syst Biol.
2011 Mar 15; 7: 473. PubMed: 21407210.
Abstract + PDF
2010 2 publication(s).
5.
A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae.
Gallego O, Betts MJ, Gvozdenovic-Jeremic J, Maeda K, Matetzki C, Aguilar-Gurrieri C, Beltran-Alvarez P, Bonn S, Fernández-Tornero C, Jensen LJ, Kuhn M, Trott J, Rybin V, Müller CW, Bork P, Kaksonen M, Russell RB, Gavin AC
Mol Syst Biol.
2010 Nov 30; 6: 430. PubMed: 21119626.
Abstract + PDF
4.
A side effect resource to capture phenotypic effects of drugs.
Mol Syst Biol.
2010; 6: 343. PubMed: 20087340.
Abstract + PDF
2008 1 publication(s).
3.
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.
Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova N, von Mering C, Bebout BM, Pace NR, Bork P, Hugenholtz P
Mol Syst Biol.
2008; 4: 198. PubMed: 18523433.
Abstract + PDF
2007 1 publication(s).
2.
Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis.
Hooper SD, Boue S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P
Mol Syst Biol.
2007; 3: 72. PubMed: 17224916.
Abstract + PDF
2005 1 publication(s).
1.
Is there biological research beyond Systems Biology? A comparative analysis of terms.
Mol Syst Biol.
2005; 1: 2005.0012. PubMed: 16729047.
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