Publications of Bork Group in the journal "Proc Natl Acad Sci U S A".

Publications of Bork Group in the journal "Proc Natl Acad Sci U S A".

Authors in this color are/were of Bork Group. [Altmetric off].
The manuscripts available on our site are provided for your personal use only and may not be retransmitted or redistributed without written permissions from the paper's publisher and author. You may not upload any of this site's material to any public server, on-line service, network, or bulletin board without prior written permission from the publisher and author. You may not make copies for any commercial purpose. Please email us for any paper request!
2015 1 publication(s).
22.
Metabolic dependencies drive species co-occurrence in diverse microbial communities.
Zelezniak A, Andrejev S, Ponomarova O, Mende DR, Bork P, Patil KR
Proc Natl Acad Sci U S A.
2015 May 19; 112(20): 6449-54. Epub 2015 May 4; PubMed: 25941371.
Abstract + PDF
2012 1 publication(s).
21.
Role for urea in nitrification by polar marine Archaea.
Alonso-Sáez L, Waller AS, Mende DR, Bakker K, Farnelid H, Yager PL, Lovejoy C, Tremblay JE, Potvin M, Heinrich F, Estrada M, Riemann L, Bork P, Pedrós-Alió C, Bertilsson S
Proc Natl Acad Sci U S A.
2012 Oct 30; 109(44): 17989-94. Epub 2012 Oct 1; PubMed: 23027926.
Abstract + PDF
2011 2 publication(s).
20.
The three-dimensional molecular structure of the desmosomal plaque.
Al-Amoudi A, Castaño-Diez D, Devos DP, Russell RB, Johnson GT, Frangakis AS
Proc Natl Acad Sci U S A.
2011 Apr 19; 108(16): 6480-5. PubMed: 21464301.
Abstract
19.
Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans.
Hallem EA, Spencer WC, McWhirter RD, Zeller G, Henz SR, Rätsch G, Miller DM, Horvitz HR, Sternberg PW, Ringstad N
Proc Natl Acad Sci U S A.
2011 Jan 4; 108(1): 254-9. PubMed: 21173231.
Abstract
2010 1 publication(s).
18.
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.
Laubinger S, Zeller G, Henz SR, Buechel S, Sachsenberg T, Wang JW, Rätsch G, Weigel D
Proc Natl Acad Sci U S A.
2010 Oct 12; 107(41): 17466-73. PubMed: 20870966.
Abstract
2009 1 publication(s).
17.
Quantifying environmental adaptation of metabolic pathways in metagenomics.
Gianoulis TA, Raes J, Patel PV, Bjornson R, Korbel JO, Letunic I, Yamada T, Paccanaro A, Jensen LJ, Snyder M, Bork P, Gerstein MB
Proc Natl Acad Sci U S A.
2009 Feb 3; 106(5): 1374-9. Epub 2009 Jan 22; PubMed: 19164758.
Abstract + PDF
2008 1 publication(s).
16.
Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages.
Pincus D, Letunic I, Bork P, Lim WA
Proc Natl Acad Sci U S A.
2008 Jul 15; 105(28): 9680-4. Epub 2008 Jul 3; PubMed: 18599463. Media echos.
Abstract + PDF
2007 1 publication(s).
15.
Quantitative assessment of protein function prediction from metagenomics shotgun sequences.
Proc Natl Acad Sci U S A.
2007 Aug 28; 104(35): 13913-8. Epub 2007 Aug 23; PubMed: 17717083.
Abstract + PDF
2003 1 publication(s).
14.
Genome evolution reveals biochemical networks and functional modules.
von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P
Proc Natl Acad Sci U S A.
2003 Dec 23; 100(26): 15428-33. Epub 2003 Dec 12; PubMed: 14673105.
Abstract + PDF
2002 3 publication(s).
13.
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.
Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, Zwahlen MC, Desiere F, Bork P, Delley M, Pridmore RD, Arigoni F
Proc Natl Acad Sci U S A.
2002 Oct 29; 99(22): 14422-7. Epub 2002 Oct 15; PubMed: 12381787.
Abstract + PDF
12.
The identification of functional modules from the genomic association of genes.
Proc Natl Acad Sci U S A.
2002 Apr 30; 99(9): 5890-5. PubMed: 11983890.
Abstract + PDF
11.
Comparative genomic analysis in the region of a major Plasmodium-refractoriness locus of Anopheles gambiae.
Thomasova D, Ton LQ, Copley RR, Zdobnov EM, Wang X, Hong YS, Sim C, Bork P, Kafatos FC, Collins FH
Proc Natl Acad Sci U S A.
2002 Jun 11; 99(12): 8179-84. PubMed: 12060762.
Abstract + PDF
2001 1 publication(s).
10.
When genetic distance matters: measuring genetic differentiation at microsatellite loci in whole-genome scans of recent and incipient mosquito species.
Wang R, Zheng L, Touré YT, Dandekar T, Kafatos FC
Proc Natl Acad Sci U S A.
2001 Sep 11; 98(19): 10769-74. PubMed: 11553812.
Abstract + PDF
2000 1 publication(s).
9.
Anopheles gambiae pilot gene discovery project: identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines.
Dimopoulos G, Casavant TL, Chang S, Scheetz T, Roberts C, Donohue M, Schultz J, Benes V, Bork P, Ansorge W, Soares MB, Kafatos FC
Proc Natl Acad Sci U S A.
2000 Jun 6; 97(12): 6619-24. PubMed: 10841561.
Abstract + PDF
1999 1 publication(s).
8.
Neutral evolution of mutational robustness.
van Nimwegen E, Crutchfield JP, Huynen MA
Proc Natl Acad Sci U S A.
1999 Aug 17; 96(17): 9716-20. PubMed: 10449760.
Abstract
1998 3 publication(s).
7.
Measuring genome evolution.
Proc Natl Acad Sci U S A.
1998 May 26; 95(11): 5849-56. PubMed: 9600883.
Abstract + PDF
6.
SMART, a simple modular architecture research tool: identification of signaling domains.
Schultz J, Milpetz F, Bork P, Ponting CP
Proc Natl Acad Sci U S A.
1998 May 26; 95(11): 5857-64. PubMed: 9600884.
Abstract + PDF
5.
A pyrimidine-rich exonic splicing suppressor binds multiple RNA splicing factors and inhibits spliceosome assembly.
Zheng ZM, Huynen MA, Baker CC
Proc Natl Acad Sci U S A.
1998 Nov 24; 95(24): 14088-93. PubMed: 9826658.
Abstract
1997 1 publication(s).
4.
Positionally cloned human disease genes: patterns of evolutionary conservation and functional motifs.
Mushegian AR, Bassett DE, Boguski MS, Bork P, Koonin EV
Proc Natl Acad Sci U S A.
1997 May 27; 94(11): 5831-6. PubMed: 9159160.
Abstract + PDF
1996 1 publication(s).
3.
Smoothness within ruggedness: the role of neutrality in adaptation.
Huynen MA, Stadler PF, Fontana W
Proc Natl Acad Sci U S A.
1996 Jan 9; 93(1): 397-401. PubMed: 8552647.
Abstract
1992 2 publication(s).
2.
Proposed acquisition of an animal protein domain by bacteria.
Bork P, Doolittle RF
Proc Natl Acad Sci U S A.
1992 Oct 1; 89(19): 8990-4. PubMed: 1409594.
Abstract + PDF
1.
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins.
Bork P, Sander C, Valencia A
Proc Natl Acad Sci U S A.
1992 Aug 15; 89(16): 7290-4. PubMed: 1323828.
Abstract + PDF