| TFIIS+PyrI | TFIIS | 244 | TP | ST | RPOM_SULAC/161-199 | 8e-10 | RPB9_DROME/88-128 | 6.4 |
| COX5B+rubredoxin | rubredoxin | 177 | TP | ST | P96745/1-49 | 4e-16 | O29906/1-32 | 10.0 |
| COX5B+TFIIS | TFIIS | 243 | TP | ST | RPOM_SULAC/161-199 | 6e-10 | RPB9_DROME/88-128 | 6.3 |
| rubredoxin+PyrI | rubredoxin | 176 | TP | ST | P96745/1-49 | 4e-16 | Q9V0A0/141-171 | 7.7 |
| TFIIS+rubredoxin | TFIIE_alpha | 4 | TP | ST | Q9YAD5/1-155 | 0.069 | Q9YAD5/1-155 | 2.5 |
| TFIIS+rubredoxin | rubredoxin | 33 | TP | ST | Q9X709/1-49 | 0.029 | Q56364/23-71 | 9.9 |
| TFIIS+rubredoxin | TFIIS | 299 | TP | ST | RPOM_SULAC/161-199 | 7e-10 | Q9U0L3/279-317 | 6.0 |