| linker_histone+PAX | linker_histone | 558 | TP | ST | H1_LYTPI/17-91 | 6e-22 | O01597/30-97 | 3.0 |
| myb_DNA-binding+recombinase | myb_DNA-binding | 3347 | TP | ST | Q9SPG0/14-60 | 9e-17 | Q9VXM9/85-130 | 9.9 |
| Methyltransf_1+Fork_head | Methyltransf_1 | 220 | TP | ST | O25387/74-162 | 2e-27 | O05862/12-88 | 0.004 |
| Methyltransf_1+Fork_head | Ald_Xan_dh_C2 | 10 | TP | ST | O61672/145-441 | 0.051 | Q9U8D6/191-695 | 5.1 |
| Methyltransf_1+Fork_head | Fork_head | 1048 | TP | ST | FXI1_HUMAN/96-191 | 3e-20 | O13043/2-29 | 8.8 |
| HTH_5+homeobox | sigma70 | 13 | TP | ST | Q55358/25-253 | 0.094 | Q9X004/4-211 | 7.6 |
| HTH_5+homeobox | HTH_1 | 73 | TP | ST | Q55459/6-147 | 0.068 | Q9ZI62/8-151 | 10.0 |
| HTH_5+homeobox | gntR | 55 | TP | ST | Q54677/13-72 | 0.076 | O06731/20-79 | 10.0 |
| HTH_5+homeobox | HTH_5 | 427 | TP | ST | Q58721/11-89 | 2e-22 | O28998/7-85 | 2.0 |
| HTH_5+homeobox | PAX | 187 | TP | ST | O61988/26-150 | 0.042 | Q9PWL1/19-143 | 9.9 |
| HTH_5+homeobox | MarR | 61 | TP | ST | O33703/36-141 | 1e-05 | O31564/47-150 | 9.9 |
| HTH_5+homeobox | Fe_dep_repress | 38 | TP | ST | Q9UX58/3-63 | 0.042 | O28489/1-60 | 8.4 |
| HTH_5+homeobox | DUF238 | 33 | TP | ST | O58704/229-315 | 0.011 | Q9UZ52/217-301 | 9.0 |
| HTH_5+homeobox | deoR | 25 | TP | ST | O67835/7-54 | 0.013 | SRLR_ECOLI/6-231 | 7.6 |
| HTH_5+homeobox | DUF24 | 33 | TP | ST | YU95_MYCTU/21-110 | 0.014 | Q9RKN4/31-121 | 9.1 |
| IRF+homeobox | homeobox | 10000 | TP | ST | Q9TZY9/2-58 | 2e-17 | PMXA_HUMAN/91-147 | 3e-08 |
| Methyltransf_1+IRF | Methyltransf_1 | 132 | TP | ST | O25387/74-162 | 5e-32 | O05862/12-88 | 0.006 |
| Methyltransf_1+IRF | Ald_Xan_dh_C2 | 7 | TP | ST | O61672/145-441 | 0.062 | Q9U8D6/191-695 | 1.2 |
| HTH_5+HTH_2 | DUF24 | 77 | TP | ST | YU95_MYCTU/21-110 | 0.008 | YTCD_BACSU/16-106 | 8.2 |
| HTH_5+HTH_2 | HTH_AraC | 77 | TP | ST | EXSA_PSEAE/204-290 | 4e-04 | INVF_SALTY/125-211 | 9.1 |
| HTH_5+HTH_2 | HTH_1 | 199 | TP | ST | Q55459/6-147 | 0.054 | RBCR_CHRVI/5-146 | 10.0 |
| HTH_5+HTH_2 | gntR | 171 | TP | ST | Q54677/13-72 | 0.088 | P73804/63-122 | 10.0 |
| HTH_5+HTH_2 | HTH_5 | 862 | TP | ST | Q58721/11-89 | 4e-22 | Q9S2T8/15-104 | 5.0 |
| HTH_5+HTH_2 | PAX | 269 | TP | ST | O61988/26-150 | 0.013 | Q9YGU7/16-139 | 9.9 |
| HTH_5+HTH_2 | DUF238 | 68 | TP | ST | O58704/229-315 | 0.009 | Q9V0D7/206-290 | 7.9 |
| HTH_5+HTH_2 | Fe_dep_repress | 76 | TP | ST | Q9UX58/3-63 | 0.021 | O58871/1-61 | 9.9 |
| HTH_5+HTH_2 | MarR | 204 | TP | ST | O33703/36-141 | 1e-05 | Q9RHM7/53-156 | 9.9 |
| HTH_5+HTH_2 | deoR | 69 | TP | ST | O67835/7-54 | 9e-04 | Q9ZB28/6-231 | 9.9 |
| HTH_2+linker_histone | HTH_AraC | 762 | TP | ST | Q9RIP5/338-424 | 2e-11 | O69703/244-329 | 9.0 |
| HTH_2+HSF_DNA-bind | HTH_AraC | 775 | TP | ST | Q9RIP5/338-424 | 1e-11 | Q9RJG8/235-320 | 5.9 |
| Methyltransf_1+PAX | Methyltransf_1 | 88 | TP | ST | O25387/74-162 | 7e-32 | O05862/12-88 | 7e-04 |
| Methyltransf_1+PAX | PAX | 150 | TP | ST | O93260/1-47 | 0.008 | Q64037/1-35 | 6.0 |
| Methyltransf_1+LexA_DNA_bind | Methyltransf_1 | 88 | TP | ST | O25387/74-162 | 1e-31 | O05862/12-88 | 0.004 |
| Methyltransf_1+LexA_DNA_bind | Ald_Xan_dh_C2 | 5 | TP | ST | O61672/145-441 | 0.088 | Q9U8D6/191-695 | 1.2 |
| Methyltransf_1+LexA_DNA_bind | LexA_DNA_bind | 24 | TP | ST | LEXA_ERWCA/1-65 | 2e-05 | O86948/1-64 | 0.87 |
| HTH_2+Ets | HTH_AraC | 945 | TP | ST | Q9RIP5/338-424 | 2e-11 | O32341/39-109 | 9.5 |
| HTH_2+Ets | Ets | 250 | TP | ST | ETS3_DROME/4-64 | 8e-04 | Q9PU63/4-87 | 10.0 |
| HTH_2+Fork_head | HTH_AraC | 768 | TP | ST | XYLR_ECOLI/301-387 | 2e-11 | Q04819/158-241 | 9.0 |
| HTH_2+Fork_head | Fork_head | 152 | TP | ST | Q22510/93-189 | 0.011 | Q9XZM6/13-108 | 9.7 |
| Fork_head+linker_histone | Fork_head | 1362 | TP | ST | SGF1_BOMMO/113-208 | 1e-35 | O60827/392-420 | 3.0 |
| Fork_head+linker_histone | linker_histone | 1080 | TP | ST | H1_LYTPI/17-91 | 7e-15 | Q24898/361-432 | 9.7 |
| Fork_head+linker_histone | NiFeSe_Hases | 2 | TP | ST | MBHL_BRAJA/53-581 | 0.093 | MBHL_BRAJA/53-581 | 0.67 |
| myb_DNA-binding+Ets | myb_DNA-binding | 3851 | TP | ST | Q9SPG0/14-60 | 1e-16 | Q9SNW9/75-120 | 9.9 |
| IRF+Ets | Ets | 975 | TP | ST | ETS2_LYTVA/3-86 | 1e-16 | O44138/80-152 | 8.9 |
| IRF+Ets | IRF | 228 | TP | ST | IRF2_MOUSE/1-114 | 2e-38 | Q9WRP3/1-115 | 0.35 |
| HTH_5+myb_DNA-binding | DUF24 | 35 | TP | ST | YU95_MYCTU/21-110 | 0.018 | Q9RKN4/31-121 | 9.3 |
| HTH_5+myb_DNA-binding | sigma70 | 14 | TP | ST | Q55358/25-253 | 0.084 | RPSD_BACSU/21-247 | 9.4 |
| HTH_5+myb_DNA-binding | HTH_1 | 81 | TP | ST | CBL_ECOLI/3-147 | 0.078 | Q9ZI62/8-151 | 9.4 |
| HTH_5+myb_DNA-binding | gntR | 58 | TP | ST | Q54677/13-72 | 0.062 | Q9X9Y2/15-73 | 9.8 |
| HTH_5+myb_DNA-binding | HTH_5 | 425 | TP | ST | Q58721/11-89 | 4e-22 | O28998/7-85 | 2.3 |
| HTH_5+myb_DNA-binding | PAX | 170 | TP | ST | O61988/26-150 | 0.029 | PAX4_MOUSE/5-129 | 9.9 |
| HTH_5+myb_DNA-binding | DUF238 | 30 | TP | ST | Q9UZF1/217-300 | 0.006 | O58571/83-164 | 9.3 |
| HTH_5+myb_DNA-binding | Fe_dep_repress | 38 | TP | ST | Q9UX58/3-63 | 0.042 | P75787/33-93 | 8.3 |
| HTH_5+myb_DNA-binding | MarR | 71 | TP | ST | O33703/36-141 | 1e-05 | Q9X5U1/42-148 | 9.4 |
| HTH_5+myb_DNA-binding | deoR | 25 | TP | ST | O67835/7-54 | 0.008 | Q9ZC48/6-231 | 5.9 |
| HTH_5+HSF_DNA-bind | DUF24 | 46 | TP | ST | Q9Y8W7/18-108 | 0.015 | Q9RKN4/31-121 | 9.8 |
| HTH_5+HSF_DNA-bind | HTH_1 | 100 | TP | ST | CBL_ECOLI/3-147 | 0.082 | O87624/4-147 | 9.9 |
| HTH_5+HSF_DNA-bind | gntR | 73 | TP | ST | Q54677/13-72 | 0.093 | YEGW_ECOLI/28-87 | 9.9 |
| HTH_5+HSF_DNA-bind | HTH_5 | 538 | TP | ST | Q58721/11-89 | 7e-23 | O28998/7-85 | 1.5 |
| HTH_5+HSF_DNA-bind | HSF_DNA-bind | 34 | TP | ST | Q9SV12/28-119 | 0.047 | HSF_KLULA/195-394 | 9.7 |
| HTH_5+HSF_DNA-bind | PAX | 205 | TP | ST | O61988/26-150 | 0.018 | Q9YH95/16-139 | 9.8 |
| HTH_5+HSF_DNA-bind | DUF238 | 41 | TP | ST | O58704/229-315 | 0.009 | Q9UZH9/220-301 | 9.7 |
| HTH_5+HSF_DNA-bind | Fe_dep_repress | 46 | TP | ST | Q9UX58/3-63 | 0.038 | O28295/7-68 | 9.7 |
| HTH_5+HSF_DNA-bind | MarR | 109 | TP | ST | O33703/36-141 | 1e-05 | P71699/83-186 | 9.3 |
| HTH_5+HSF_DNA-bind | deoR | 34 | TP | ST | O67835/7-54 | 0.007 | SRLR_ECOLI/6-231 | 7.4 |
| HSF_DNA-bind+LexA_DNA_bind | HSF_DNA-bind | 211 | TP | ST | HSF1_HUMAN/16-211 | 3e-43 | Q9UBD0/194-225 | 9.2 |
| Fork_head+HSF_DNA-bind | Fork_head | 908 | TP | ST | O13017/72-167 | 3e-39 | O13043/2-29 | 5.0 |
| Fork_head+HSF_DNA-bind | HSF_DNA-bind | 173 | TP | ST | HSF1_CHICK/21-216 | 6e-11 | Q9XW45/90-289 | 7.9 |
| HSF_DNA-bind+IRF | IRF | 209 | TP | ST | IRF1_CHICK/1-114 | 5e-15 | Q9WRN8/10-125 | 8.8 |
| HSF_DNA-bind+IRF | HSF_DNA-bind | 418 | TP | ST | HSF1_CHICK/21-216 | 2e-37 | Q9XW54/246-280 | 2.5 |
| trans_reg_C+IRF | trans_reg_C | 1048 | TP | ST | Q9X2L0/155-227 | 2e-24 | Q56848/19-89 | 2.3 |
| Fork_head+Ets | Fork_head | 681 | TP | ST | O73782/96-191 | 5e-39 | O13043/2-29 | 1.2 |
| Fork_head+Ets | Ets | 301 | TP | ST | Q9VRU5/10-93 | 2e-08 | POK_DROME/395-481 | 9.9 |
| Fork_head+trans_reg_C | Fork_head | 2025 | TP | ST | HN3G_HUMAN/117-212 | 1e-34 | O60827/392-420 | 0.21 |
| Fork_head+trans_reg_C | trans_reg_C | 2162 | TP | ST | Q9X2L0/155-227 | 4e-14 | Q9RFS4/5-39 | 8.9 |
| trans_reg_C+linker_histone | linker_histone | 285 | TP | ST | O16277/34-110 | 1e-06 | Q23784/56-130 | 10.0 |
| trans_reg_C+linker_histone | trans_reg_C | 2092 | TP | ST | Q9X2L0/155-227 | 1e-24 | P74968/142-208 | 1.2 |
| linker_histone+homeobox | linker_histone | 735 | TP | ST | H1_LYTPI/17-91 | 7e-21 | O01597/30-97 | 0.92 |
| linker_histone+homeobox | homeobox | 555 | TP | ST | Q17138/16-72 | 8e-05 | Q9Y1T7/159-215 | 0.16 |
| HSF_DNA-bind+linker_histone | HSF_DNA-bind | 210 | TP | ST | HSF1_HUMAN/16-211 | 6e-43 | Q9UBD0/194-225 | 9.4 |
| Fork_head+recombinase | Fork_head | 681 | TP | ST | P79771/39-134 | 6e-44 | O13043/2-29 | 0.27 |
| myb_DNA-binding+LexA_DNA_bind | LexA_DNA_bind | 17 | TP | ST | LEXA_ECOLI/1-65 | 3e-04 | LEXA_THEMA/1-64 | 2.3 |
| myb_DNA-binding+LexA_DNA_bind | myb_DNA-binding | 4932 | TP | ST | Q9SPG0/14-60 | 2e-16 | O49019/67-112 | 9.6 |
| HTH_5+IRF | TFIIE_alpha | 9 | TP | ST | O58353/14-179 | 0.058 | O27705/14-176 | 6.2 |
| HTH_5+IRF | DUF24 | 33 | TP | ST | YU95_MYCTU/21-110 | 0.006 | Q9RKN4/31-121 | 6.9 |
| HTH_5+IRF | HTH_1 | 81 | TP | ST | Q55459/6-147 | 0.054 | Q9RCF1/7-152 | 9.4 |
| HTH_5+IRF | gntR | 57 | TP | ST | Q54677/13-72 | 0.095 | YDHC_BACSU/16-74 | 10.0 |
| HTH_5+IRF | HTH_5 | 430 | TP | ST | Q58721/11-89 | 2e-22 | Q49688/34-133 | 4.8 |
| HTH_5+IRF | PAX | 164 | TP | ST | O61988/26-150 | 0.025 | O16804/1-124 | 8.2 |
| HTH_5+IRF | DUF238 | 34 | TP | ST | O58704/229-315 | 0.007 | Q9UZH9/220-301 | 9.0 |
| HTH_5+IRF | Fe_dep_repress | 38 | TP | ST | Q9UX58/3-63 | 0.037 | P75787/33-93 | 9.7 |
| HTH_5+IRF | MarR | 65 | TP | ST | O33703/36-141 | 1e-05 | Q9S3W0/29-133 | 9.8 |
| HTH_5+IRF | deoR | 26 | TP | ST | O67835/7-54 | 0.006 | Q9X9X5/11-237 | 9.5 |
| HTH_5+trans_reg_C | HTH_1 | 113 | TP | ST | CBL_ECOLI/3-147 | 0.047 | Q9RH21/6-145 | 9.8 |
| HTH_5+trans_reg_C | gntR | 82 | TP | ST | Q54677/13-72 | 0.069 | O06731/20-79 | 9.5 |
| HTH_5+trans_reg_C | HTH_5 | 534 | TP | ST | Q58721/11-89 | 7e-23 | P95888/17-102 | 4.9 |
| HTH_5+trans_reg_C | trans_reg_C | 47 | TP | ST | Q9RMA4/153-226 | 0.005 | O85302/166-237 | 9.7 |
| HTH_5+trans_reg_C | PAX | 140 | TP | ST | O61988/26-150 | 0.034 | O16117/175-299 | 9.8 |
| HTH_5+trans_reg_C | MarR | 105 | TP | ST | O33703/36-141 | 2e-05 | Q9RA96/29-133 | 9.9 |
| HTH_5+trans_reg_C | Fe_dep_repress | 49 | TP | ST | O33330/9-70 | 0.020 | O28489/1-60 | 9.5 |
| HTH_5+trans_reg_C | DUF238 | 47 | TP | ST | Q9UZF1/217-300 | 0.009 | Q9UZ52/217-301 | 9.5 |
| HTH_5+trans_reg_C | deoR | 38 | TP | ST | O67835/7-54 | 0.007 | SRLR_ECOLI/6-231 | 8.1 |
| HTH_5+trans_reg_C | DUF24 | 41 | TP | ST | YU95_MYCTU/21-110 | 0.010 | Q9RKN4/31-121 | 8.8 |
| Methyltransf_1+trans_reg_C | Methyltransf_1 | 352 | TP | ST | O25387/74-162 | 2e-28 | O84483/90-170 | 1.8 |
| Methyltransf_1+trans_reg_C | trans_reg_C | 1823 | TP | ST | P94413/150-221 | 1e-16 | P95217/313-369 | 9.8 |
| LexA_DNA_bind+IRF | LexA_DNA_bind | 36 | TP | ST | LEXA_ECOLI/1-65 | 2e-20 | LEXA_RHOSH/2-63 | 7e-05 |
| LexA_DNA_bind+IRF | HTH_5 | 2 | TP | ST | Q9UY03/14-107 | 0.021 | O59593/15-115 | 0.051 |
| LexA_DNA_bind+IRF | cobN-Mg_chel | 2 | TP | ST | Q58318/185-1155 | 0.055 | O53498/155-1118 | 5.1 |
| Methyltransf_1+HSF_DNA-bind | Methyltransf_1 | 264 | TP | ST | O25387/74-162 | 4e-29 | O05862/12-88 | 0.001 |
| Methyltransf_1+HSF_DNA-bind | HSF_DNA-bind | 300 | TP | ST | Q43457/7-102 | 1e-11 | O82041/10-95 | 9.8 |
| HTH_5+PAX | DUF24 | 56 | TP | ST | Q9Y8W7/18-108 | 0.021 | Q9RKN4/31-121 | 8.8 |
| HTH_5+PAX | HTH_1 | 139 | TP | ST | Q55459/6-147 | 0.043 | P73862/5-146 | 9.8 |
| HTH_5+PAX | gntR | 95 | TP | ST | Q54677/13-72 | 0.091 | O31459/8-67 | 9.9 |
| HTH_5+PAX | HTH_5 | 645 | TP | ST | Q58721/11-89 | 1e-22 | O28271/13-100 | 0.71 |
| HTH_5+PAX | PAX | 320 | TP | ST | O61988/26-150 | 0.010 | O57681/16-140 | 9.9 |
| HTH_5+PAX | DUF238 | 54 | TP | ST | Q9UZF1/217-300 | 0.006 | Q9UYX1/217-299 | 9.2 |
| HTH_5+PAX | Fe_dep_repress | 59 | TP | ST | Q9UX58/3-63 | 0.030 | P96120/2-66 | 9.8 |
| HTH_5+PAX | MarR | 134 | TP | ST | O33703/36-141 | 2e-05 | O85850/41-144 | 9.9 |
| HTH_5+PAX | deoR | 43 | TP | ST | O67835/7-54 | 0.006 | YJFQ_ECOLI/6-230 | 6.5 |
| HTH_5+recombinase | resolvase | 25 | TP | ST | O66046/3-139 | 0.085 | Q56439/2-120 | 7.4 |
| HTH_5+recombinase | HTH_1 | 75 | TP | ST | CBL_ECOLI/3-147 | 0.076 | O84916/6-147 | 10.0 |
| HTH_5+recombinase | HTH_5 | 427 | TP | ST | Q58721/11-89 | 8e-23 | O58663/10-93 | 1.1 |
| HTH_5+recombinase | PAX | 142 | TP | ST | O61988/26-150 | 0.023 | Q9PSA1/2-126 | 9.5 |
| HTH_5+recombinase | MarR | 66 | TP | ST | O33703/36-141 | 2e-05 | EXPG_RHIME/79-179 | 9.8 |
| HTH_5+recombinase | Fe_dep_repress | 38 | TP | ST | Q9UX58/3-63 | 0.023 | Q9RRF3/4-63 | 8.8 |
| HTH_5+recombinase | DUF238 | 31 | TP | ST | O58704/229-315 | 0.008 | Q9UYX1/217-299 | 10.0 |
| HTH_5+recombinase | deoR | 23 | TP | ST | O67835/7-54 | 0.007 | SRLR_ECOLI/6-231 | 10.0 |
| HTH_5+recombinase | DUF24 | 35 | TP | ST | YU95_MYCTU/21-110 | 0.011 | Q9RKN4/31-121 | 8.3 |
| LexA_DNA_bind+PAX | LexA_DNA_bind | 36 | TP | ST | LEXA_ECOLI/1-65 | 2e-20 | LEXA_RHOSH/2-63 | 2e-05 |
| LexA_DNA_bind+PAX | HTH_5 | 2 | TP | ST | Q9UY03/14-107 | 0.021 | O59593/15-115 | 0.051 |
| LexA_DNA_bind+PAX | cobN-Mg_chel | 3 | TP | ST | Q58318/185-1155 | 0.055 | O53498/155-1118 | 5.1 |
| LexA_DNA_bind+recombinase | resolvase | 542 | TP | ST | Q57343/1-136 | 6e-14 | Y4CG_RHISN/14-150 | 10.0 |
| LexA_DNA_bind+recombinase | LexA_DNA_bind | 144 | TP | ST | LEXA_AERHY/1-65 | 1e-17 | LEXA_RHOSH/2-63 | 6e-06 |
| LexA_DNA_bind+recombinase | cobN-Mg_chel | 16 | TP | ST | Q58318/185-1155 | 0.017 | Q9RJ19/154-1138 | 9.9 |
| Fork_head+homeobox | Fork_head | 677 | TP | ST | Q9W1Y5/85-180 | 2e-43 | Q91763/1-31 | 0.004 |
| Fork_head+homeobox | homeobox | 277 | TP | ST | Q9VFQ3/304-360 | 0.007 | Q17137/16-69 | 0.35 |
| Methyltransf_1+recombinase | Methyltransf_1 | 88 | TP | ST | O25387/74-162 | 9e-32 | O05862/12-88 | 0.002 |
| Methyltransf_1+recombinase | Ald_Xan_dh_C2 | 4 | TP | ST | O61672/145-441 | 0.091 | Q9U8D6/191-695 | 1.3 |
| HTH_5+Methyltransf_1 | HTH_1 | 92 | TP | ST | Q55459/6-147 | 0.061 | YEAT_ECOLI/7-146 | 9.9 |
| HTH_5+Methyltransf_1 | gntR | 56 | TP | ST | Q54677/13-72 | 0.090 | YEGW_ECOLI/28-87 | 9.5 |
| HTH_5+Methyltransf_1 | HTH_5 | 429 | TP | ST | Q58721/11-89 | 5e-22 | O28271/13-100 | 1.5 |
| HTH_5+Methyltransf_1 | PAX | 101 | TP | ST | O61988/26-150 | 0.061 | O96044/5-108 | 9.7 |
| HTH_5+Methyltransf_1 | MarR | 74 | TP | ST | O33703/36-141 | 2e-05 | P71699/83-186 | 9.9 |
| HTH_5+Methyltransf_1 | Fe_dep_repress | 36 | TP | ST | Q9UX58/3-63 | 0.029 | O28295/7-68 | 7.8 |
| HTH_5+Methyltransf_1 | DUF238 | 33 | TP | ST | O58704/229-315 | 0.008 | Q9UYX1/217-299 | 9.1 |
| HTH_5+Methyltransf_1 | deoR | 26 | TP | ST | O67835/7-54 | 0.009 | Q9X9X5/11-237 | 8.9 |
| HTH_5+Methyltransf_1 | DUF24 | 36 | TP | ST | YU95_MYCTU/21-110 | 0.010 | YODB_BACSU/15-105 | 9.5 |
| trans_reg_C+homeobox | homeobox | 10000 | TP | ST | Q9TZY9/2-58 | 2e-17 | Q9Y0X7/6-62 | 5e-07 |
| linker_histone+Ets | linker_histone | 743 | TP | ST | H1_LYTPI/17-91 | 2e-21 | O01597/30-97 | 6.9 |
| linker_histone+Ets | Ets | 97 | TP | ST | ELG_DROME/345-428 | 0.002 | Q9VCN2/609-692 | 8.1 |
| Methyltransf_1+homeobox | Methyltransf_1 | 132 | TP | ST | O25387/74-162 | 7e-32 | O05862/12-88 | 0.018 |
| Methyltransf_1+homeobox | Ald_Xan_dh_C2 | 8 | TP | ST | O61672/145-441 | 0.080 | Q9U8D7/191-695 | 7.7 |
| HTH_2+LexA_DNA_bind | HTH_AraC | 770 | TP | ST | Q9RIP5/338-424 | 9e-12 | Q9RLI7/228-317 | 8.7 |
| HTH_2+LexA_DNA_bind | LexA_DNA_bind | 13 | TP | ST | LEXA_PSEPU/1-65 | 0.010 | O69979/25-89 | 1.8 |
| linker_histone+recombinase | linker_histone | 743 | TP | ST | H1_LYTPI/17-91 | 2e-21 | O24252/154-224 | 6.2 |
| HTH_5+Fork_head | HTH_1 | 130 | TP | ST | CBL_ECOLI/3-147 | 0.024 | Q9ZI62/8-151 | 9.8 |
| HTH_5+Fork_head | HTH_5 | 1076 | TP | ST | Q58721/11-89 | 9e-19 | O28271/13-100 | 4.4 |
| HTH_5+Fork_head | MarR | 90 | TP | ST | O33703/36-141 | 9e-05 | P71699/83-186 | 9.7 |
| HTH_5+Fork_head | Fe_dep_repress | 64 | TP | ST | O33330/9-70 | 0.025 | Y568_METJA/1-61 | 7.7 |
| HTH_5+Fork_head | DUF238 | 100 | TP | ST | Q9UZF1/217-300 | 0.006 | O58990/73-157 | 9.7 |
| HTH_5+Fork_head | Fork_head | 1965 | TP | ST | O02427/131-226 | 3e-17 | O44756/168-262 | 4.3 |
| HTH_5+Fork_head | deoR | 30 | TP | ST | YIHW_ECOLI/19-244 | 0.008 | YJFQ_ECOLI/6-230 | 9.0 |
| HTH_5+Fork_head | DUF24 | 48 | TP | ST | P71983/16-103 | 0.042 | Y925_METJA/6-93 | 7.3 |
| Methyltransf_1+Ets | Methyltransf_1 | 132 | TP | ST | O25387/74-162 | 5e-32 | O05862/12-88 | 0.012 |
| Methyltransf_1+Ets | Ald_Xan_dh_C2 | 8 | TP | ST | O61672/145-441 | 0.092 | Q9U8D7/191-695 | 7.3 |
| Methyltransf_1+Ets | Ets | 122 | TP | ST | Q18579/34-117 | 0.073 | Q99718/249-334 | 9.8 |
| recombinase+homeobox | homeobox | 9000 | TP | ST | Q9TZY9/2-58 | 2e-17 | HXB4_BRARE/11-67 | 5e-07 |
| LexA_DNA_bind+homeobox | homeobox | 8816 | TP | ST | Q9U9Z6/9-65 | 2e-13 | HXC5_BRARE/166-222 | 0.057 |
| LexA_DNA_bind+homeobox | LexA_DNA_bind | 184 | TP | ST | LEXA_ECOLI/1-65 | 2e-17 | LEXA_RHOSH/2-63 | 2e-05 |
| HTH_2+IRF | HTH_AraC | 775 | TP | ST | XYLR_ECOLI/301-387 | 2e-11 | Q56790/389-476 | 4.8 |
| myb_DNA-binding+IRF | myb_DNA-binding | 5389 | TP | ST | Q9SPG0/14-60 | 2e-16 | O22264/67-112 | 9.8 |
| HTH_2+PAX | HTH_AraC | 775 | TP | ST | Q9RIP5/338-424 | 2e-11 | Q56801/416-503 | 6.5 |
| PAX+homeobox | homeobox | 8500 | TP | ST | Q9TZY9/2-58 | 2e-17 | Q9U7D7/72-128 | 7e-10 |
| myb_DNA-binding+PAX | PAX | 587 | TP | ST | Q9PUK6/16-139 | 8e-07 | O18893/1-95 | 0.24 |
| myb_DNA-binding+PAX | myb_DNA-binding | 4913 | TP | ST | Q9SPG0/14-60 | 2e-15 | Q9VHX0/391-437 | 0.25 |
| myb_DNA-binding+HSF_DNA-bind | myb_DNA-binding | 3860 | TP | ST | Q9SPG0/14-60 | 1e-16 | Q9PTJ4/144-189 | 9.9 |
| recombinase+Ets | resolvase | 65 | TP | ST | TNP1_ECOLI/1-139 | 0.021 | Q9RBR3/1-136 | 9.8 |
| recombinase+Ets | Ets | 503 | TP | ST | ETS2_LYTVA/3-86 | 5e-35 | O46472/1-19 | 0.72 |
| HSF_DNA-bind+Ets | Ets | 502 | TP | ST | Q14319/214-297 | 1e-21 | O46472/1-19 | 8.2 |
| HSF_DNA-bind+Ets | HSF_DNA-bind | 209 | TP | ST | HSF1_CHICK/21-216 | 2e-34 | O49402/206-233 | 9.1 |
| Fork_head+IRF | Fork_head | 908 | TP | ST | Q9QWR9/78-173 | 2e-39 | O13043/2-29 | 0.56 |
| Fork_head+IRF | IRF | 102 | TP | ST | IRF1_RAT/1-114 | 4e-11 | O57578/3-118 | 8.8 |
| trans_reg_C+Ets | Ets | 611 | TP | ST | O95058/4-88 | 3e-04 | Q9UKW5/162-246 | 9.7 |
| trans_reg_C+Ets | trans_reg_C | 1834 | TP | ST | Q9X2L0/155-227 | 1e-24 | Q56848/19-89 | 3.1 |
| Ets+homeobox | homeobox | 6000 | TP | ST | Q9TZY9/2-58 | 2e-17 | HXDA_BRARE/259-315 | 3e-08 |
| Methyltransf_1+myb_DNA-binding | Methyltransf_1 | 440 | TP | ST | O25387/74-162 | 2e-29 | O05862/12-88 | 0.004 |
| Methyltransf_1+myb_DNA-binding | Ald_Xan_dh_C2 | 30 | TP | ST | O61672/145-441 | 0.098 | Q9U8D7/191-695 | 8.2 |
| Methyltransf_1+myb_DNA-binding | myb_DNA-binding | 1712 | TP | ST | Q9XIU9/14-61 | 6e-08 | O01719/93-139 | 9.6 |
| HTH_5+LexA_DNA_bind | TFIIE_alpha | 12 | TP | ST | O58353/14-179 | 0.093 | O27705/14-176 | 8.2 |
| HTH_5+LexA_DNA_bind | LexA_DNA_bind | 16 | TP | ST | Q49848/20-84 | 0.005 | P73722/1-65 | 5.2 |
| HTH_5+LexA_DNA_bind | DUF24 | 36 | TP | ST | YDZF_BACHD/24-113 | 0.007 | Q9WWC3/3-93 | 7.2 |
| HTH_5+LexA_DNA_bind | HTH_1 | 90 | TP | ST | CBL_ECOLI/3-147 | 0.051 | TRPI_PSEAE/8-145 | 9.7 |
| HTH_5+LexA_DNA_bind | gntR | 63 | TP | ST | Q54677/13-72 | 0.077 | O88071/21-82 | 10.0 |
| HTH_5+LexA_DNA_bind | HTH_5 | 433 | TP | ST | Q58721/11-89 | 5e-22 | O53151/45-144 | 7.2 |
| HTH_5+LexA_DNA_bind | PAX | 180 | TP | ST | O61988/26-150 | 0.013 | O96045/8-132 | 9.6 |
| HTH_5+LexA_DNA_bind | DUF238 | 34 | TP | ST | O58704/229-315 | 0.010 | Q9UYX1/217-299 | 8.9 |
| HTH_5+LexA_DNA_bind | Fe_dep_repress | 41 | TP | ST | Q9UX58/3-63 | 0.020 | O28489/1-60 | 8.5 |
| HTH_5+LexA_DNA_bind | MarR | 69 | TP | ST | O33703/36-141 | 2e-05 | Q9RK19/49-153 | 9.9 |
| HTH_5+LexA_DNA_bind | deoR | 29 | TP | ST | O67835/7-54 | 0.011 | YJFQ_ECOLI/6-230 | 6.9 |
| Methyltransf_1+linker_histone | Methyltransf_1 | 308 | TP | ST | O25387/74-162 | 3e-24 | O84483/90-170 | 0.069 |
| Methyltransf_1+linker_histone | linker_histone | 1226 | TP | ST | O65794/66-136 | 5e-14 | O24252/154-224 | 9.8 |
| Fork_head+PAX | Fork_head | 681 | TP | ST | FXC2_HUMAN/72-167 | 1e-43 | O13043/2-29 | 0.31 |
| HTH_2+myb_DNA-binding | HTH_AraC | 764 | TP | ST | Q9RIP5/338-424 | 1e-11 | Q56801/416-503 | 7.6 |
| Fork_head+myb_DNA-binding | Fork_head | 681 | TP | ST | HN3B_HUMAN/159-254 | 3e-42 | O13043/2-29 | 1.3 |
| Fork_head+myb_DNA-binding | myb_DNA-binding | 167 | TP | ST | Q9SPG3/14-70 | 9e-06 | Q9ZTC7/10-57 | 8.9 |
| HTH_2+homeobox | HTH_AraC | 762 | TP | ST | XYLR_ECOLI/301-387 | 1e-11 | O85815/227-316 | 9.7 |
| HTH_5+linker_histone | TFIIE_alpha | 12 | TP | ST | Y777_METJA/28-189 | 0.020 | O27705/14-176 | 4.8 |
| HTH_5+linker_histone | linker_histone | 53 | TP | ST | H1_LYTPI/17-91 | 2e-04 | Q9SWA4/53-123 | 9.2 |
| HTH_5+linker_histone | DUF24 | 58 | TP | ST | YU95_MYCTU/21-110 | 0.006 | P70885/18-108 | 8.9 |
| HTH_5+linker_histone | HTH_1 | 126 | TP | ST | CBL_ECOLI/3-147 | 0.070 | O87624/4-147 | 10.0 |
| HTH_5+linker_histone | gntR | 98 | TP | ST | Q54677/13-72 | 0.082 | Q9X9T6/14-73 | 10.0 |
| HTH_5+linker_histone | HTH_5 | 645 | TP | ST | Q58721/11-89 | 1e-21 | O58663/10-93 | 2.1 |
| HTH_5+linker_histone | PAX | 342 | TP | ST | PAX6_ORYLA/23-147 | 0.008 | Q9VHS5/41-165 | 10.0 |
| HTH_5+linker_histone | DUF238 | 55 | TP | ST | O58704/229-315 | 0.008 | Q9UZH9/220-301 | 9.3 |
| HTH_5+linker_histone | Fe_dep_repress | 64 | TP | ST | O33330/9-70 | 0.042 | Q9UX58/3-63 | 9.7 |
| HTH_5+linker_histone | MarR | 142 | TP | ST | O33703/36-141 | 2e-05 | PETP_RHOCA/47-150 | 9.6 |
| HTH_5+linker_histone | deoR | 44 | TP | ST | O67835/7-54 | 0.009 | O50267/28-255 | 8.7 |
| trans_reg_C+HSF_DNA-bind | HSF_DNA-bind | 50 | TP | ST | O49403/14-111 | 0.041 | Q99472/19-212 | 9.9 |
| trans_reg_C+HSF_DNA-bind | trans_reg_C | 2094 | TP | ST | Q9X2L0/155-227 | 7e-25 | Q9Z623/69-131 | 0.33 |
| HSF_DNA-bind+homeobox | HSF_DNA-bind | 210 | TP | ST | HSF1_HUMAN/16-211 | 6e-43 | Q9UBD0/194-225 | 8.7 |
| Methyltransf_1+HTH_2 | Methyltransf_1 | 132 | TP | ST | O25387/74-162 | 5e-32 | O84483/90-170 | 0.029 |
| Methyltransf_1+HTH_2 | Ald_Xan_dh_C2 | 8 | TP | ST | O61672/145-441 | 0.066 | Q9U8D7/191-695 | 7.5 |
| Methyltransf_1+HTH_2 | HTH_AraC | 33 | TP | ST | XYLR_ECOLI/301-387 | 0.016 | LCRF_YERPE/180-266 | 8.9 |
| HTH_2+trans_reg_C | HTH_AraC | 762 | TP | ST | Q9RIP5/338-424 | 7e-12 | XYS3_PSEPU/227-316 | 9.4 |
| trans_reg_C+LexA_DNA_bind | LexA_DNA_bind | 27 | TP | ST | LEXA_AERHY/1-65 | 7e-06 | O86050/1-64 | 4.6 |
| trans_reg_C+LexA_DNA_bind | trans_reg_C | 1309 | TP | ST | Q9X2L0/155-227 | 2e-24 | P74968/142-208 | 4.7 |
| LexA_DNA_bind+Ets | deoR | 3 | TP | ST | O87925/6-230 | 0.081 | Q9X9X5/11-237 | 7.2 |
| LexA_DNA_bind+Ets | LexA_DNA_bind | 54 | TP | ST | LEXA_ECOLI/1-65 | 1e-17 | LEXA_RHOSH/2-63 | 5e-04 |
| LexA_DNA_bind+Ets | Ets | 486 | TP | ST | ET2A_XENLA/365-448 | 9e-18 | Q25651/1-33 | 6.7 |
| myb_DNA-binding+homeobox | homeobox | 7007 | TP | ST | Q9U9Z6/9-65 | 2e-12 | HXA4_MOUSE/181-237 | 0.15 |
| myb_DNA-binding+homeobox | myb_DNA-binding | 1493 | TP | ST | Q9SPG0/14-60 | 5e-15 | Q9SJX8/67-112 | 0.035 |
| myb_DNA-binding+linker_histone | myb_DNA-binding | 3357 | TP | ST | Q9SPG0/14-60 | 1e-17 | O15416/2-47 | 9.6 |
| HTH_2+recombinase | HTH_AraC | 772 | TP | ST | Q9RIP5/338-424 | 9e-12 | Q56831/416-502 | 9.0 |
| myb_DNA-binding+trans_reg_C | myb_DNA-binding | 4848 | TP | ST | Q9SPG0/14-60 | 2e-16 | YDPA_SCHPO/71-116 | 9.9 |
| linker_histone+IRF | linker_histone | 558 | TP | ST | H1_LYTPI/17-91 | 1e-21 | O01597/30-97 | 3.8 |
| linker_histone+IRF | IRF | 17 | TP | ST | IRF1_HUMAN/1-114 | 0.005 | Q99660/17-130 | 5.5 |
| linker_histone+LexA_DNA_bind | linker_histone | 557 | TP | ST | H1_LYTPI/17-91 | 1e-21 | O24252/154-224 | 1.4 |
| linker_histone+LexA_DNA_bind | LexA_DNA_bind | 36 | TP | ST | LEXA_PSEPU/1-65 | 1e-05 | O86050/1-64 | 3.9 |
| Fork_head+LexA_DNA_bind | Fork_head | 681 | TP | ST | HN3B_HUMAN/159-254 | 2e-41 | Q9TW47/3-36 | 0.96 |
| Fork_head+LexA_DNA_bind | LexA_DNA_bind | 32 | TP | ST | LEXA_ECOLI/1-65 | 6e-06 | LEXA_BACSU/1-65 | 0.17 |