IRF_HSF_merged_pruned	HSF	90	TP	ST	Q9XW45|Q9XW45/88-194	4.7e-43	Q9BZA3|Q9BZA3/76-175	0.044
IRF_HSF_merged_pruned	IRF	63	TP	ST	O57578|O57578/3-116	1.4e-36	Q9J2J5|Q9J2J5/4-108	0.48

HTH_CRP_IRF_merged_pruned	HTH_ARSR	20	TP	ST	P30340|SMTB_SYNP7/38-116	0.00011	Q9KF20|Q9KF20/8-86	8.6
HTH_CRP_IRF_merged_pruned	HTH_CRP	137	TP	ST	P29284|FLP_LACCA/162-210	1.3e-05	Q9HPN5|Q9HPN5/27-76	9.9
HTH_CRP_IRF_merged_pruned	HTH_ICLR	2	TP	ST	AAK46030|AAK46030/13-101	0.015	P71977|P71977/13-101	0.015
HTH_CRP_IRF_merged_pruned	IRF	65	TP	ST	O57578|O57578/3-116	1.9e-26	Q9BX23|Q9BX23/1-75	1.6

FH_IRF_merged_pruned	FH	274	TP	ST	Q02360|FD2_DROME/89-185	8.5e-38	AAH08826|AAH08826/237-428	0.35
FH_IRF_merged_pruned	IRF	62	TP	ST	Q15306|IRF4_HUMAN/17-130	9.7e-42	Q9WRP0|Q9WRP0/10-122	0.0025

SANT_HOX_merged_pruned	HOX	2694	TP	ST	AAK58840|AAK58840/116-178	8.4e-17	Q9PVR5|Q9PVR5/1-43	9.7
SANT_HOX_merged_pruned	SANT	1283	TP	ST	Q9LE63|Q9LE63/13-114	2.2e-26	Q9SR68|Q9SR68/157-221	9.9
SANT_HOX_merged_pruned	ZPW	3	TP	ST	Q9VUE6|Q9VUE6/20-101	8.3	Q9VUE5|Q9VUE5/10-98	8.5

Fork_head+linker_histone	FH	269	TP	ST	P32031|SLP2_DROME/178-268	8.1e-45	O17617|O17617/417-508	2.5
Fork_head+linker_histone	H15	212	TP	ST	P15869|H1B_STRPU/15-81	1.1e-16	Q9LPL9|Q9LPL9/113-180	9

HTH_ARSR_FH_merged_pruned	FH	252	TP	ST	Q90964|FXGB_CHICK/141-231	1.5e-12	AAK68685|AAK68685/375-505	8.5
HTH_ARSR_FH_merged_pruned	HTH_ARSR	249	TP	ST	Q58721|Q58721/9-88	3.1e-32	Q9PMB3|Q9PMB3/6-58	3.7
HTH_ARSR_FH_merged_pruned	HTH_ASNC	64	TP	ST	BAB59523|BAB59523/14-115	1.2e-05	Q9V2K6|Q9V2K6/4-110	8.6
HTH_ARSR_FH_merged_pruned	HTH_CRP	5	TP	ST	O28013|O28013/16-65	0.36	Q57978|Y558_METJA/14-63	9.9
HTH_ARSR_FH_merged_pruned	HTH_DTXR	2	TP	ST	O30276|O30276/24-122	2.5	Q9UX58|Q9UX58/26-125	4.7
HTH_ARSR_FH_merged_pruned	HTH_ICLR	47	TP	ST	Q9RB23|Q9RB23/13-102	0.00098	O66964|O66964/11-99	9.3
HTH_ARSR_FH_merged_pruned	HTH_MARR	133	TP	ST	AAK76226|AAK76226/29-131	6.5e-12	Q99XY5|Q99XY5/29-129	10
HTH_ARSR_FH_merged_pruned	TFIIE	3	TP	ST	O58353|O58353/24-163	2.7	Q9YAD5|Q9YAD5/3-141	9.8

FH_HTH_CRP_merged_pruned	FH	273	TP	ST	Q08050|FXM1_HUMAN/234-321	4.3e-28	O44755|O44755/140-221	2.3
FH_HTH_CRP_merged_pruned	H15	1	TP	ST	Q40725|Q40725/18-84	5.7
FH_HTH_CRP_merged_pruned	HTH_ARSR	47	TP	ST	Q9XBC8|Q9XBC8/268-335	9.7e-06	P71939|P71939/34-114	9.7
FH_HTH_CRP_merged_pruned	HTH_ASNC	3	TP	ST	BAB59523|BAB59523/14-115	3.2	O28531|O28531/7-109	8.7
FH_HTH_CRP_merged_pruned	HTH_CRP	148	TP	ST	P29284|FLP_LACCA/162-210	5.9e-08	Q9RKI5|Q9RKI5/167-215	10
FH_HTH_CRP_merged_pruned	HTH_GNTR	2	TP	ST	AAK78577|AAK78577/13-76	4.7	P73804|P73804/63-122	5.6
FH_HTH_CRP_merged_pruned	HTH_ICLR	4	TP	ST	AAK46030|AAK46030/13-101	0.001	Q9R9U0|Q9R9U0/14-102	4.9
FH_HTH_CRP_merged_pruned	HTH_MARR	28	TP	ST	Q9PGT2|Q9PGT2/45-147	0.13	O31443|O31443/28-128	9.6

HTH_ARSR_HSF_merged_pruned	HSF	53	TP	ST	P22813|HSF_DROME/45-148	0.33	P41154|HSF_XENLA/11-115	10
HTH_ARSR_HSF_merged_pruned	HTH_ARSR	249	TP	ST	Q58721|Q58721/9-88	5.8e-31	AAK73168|AAK73168/16-89	0.35
HTH_ARSR_HSF_merged_pruned	HTH_ASNC	64	TP	ST	O29671|O29671/1-104	0.0082	Q9HVR3|Q9HVR3/3-112	8.3
HTH_ARSR_HSF_merged_pruned	HTH_CRP	2	TP	ST	O28013|O28013/16-65	0.53	Q9XBC8|Q9XBC8/272-321	4.2
HTH_ARSR_HSF_merged_pruned	HTH_DTXR	2	TP	ST	Q9UX58|Q9UX58/26-125	2.3	O30276|O30276/24-122	3.4
HTH_ARSR_HSF_merged_pruned	HTH_ICLR	48	TP	ST	Q9RB23|Q9RB23/13-102	0.012	O87190|O87190/19-109	9.9
HTH_ARSR_HSF_merged_pruned	HTH_MARR	139	TP	ST	AAK76226|AAK76226/29-131	6.3e-12	P70734|P70734/31-131	9.9
HTH_ARSR_HSF_merged_pruned	TFIIE	3	TP	ST	O58353|O58353/24-163	1.7	Q58187|Y777_METJA/37-175	8.4

HOX_PAX_merged_pruned	FH	1	TP	ST	AAH08826|AAH08826/237-428	2.1e-07
HOX_PAX_merged_pruned	HOX	2828	TP	ST	Q94576|Q94576/2-64	8e-32	P40333|MB11_COPCI/165-230	8.6
HOX_PAX_merged_pruned	PAX	2	TP	ST	Q20551|Q20551/97-215	0.11	Q21972|Q21972/13-135	4.5

ETS_HSF_merged_pruned	ETS	185	TP	ST	AAB70311|AAB70311/293-380	2.1e-35	CAC42095|CAC42095/87-137	3.8
ETS_HSF_merged_pruned	HSF	90	TP	ST	Q02953|HSF_SCHPO/49-154	8.5e-50	Q9BZA3|Q9BZA3/76-175	0.038
ETS_HSF_merged_pruned	PP2C_SIG	1	TP	ST	Q9M3V0|Q9M3V0/60-355	7.6
ETS_HSF_merged_pruned	PP2Cc	1	TP	ST	Q9M3V0|Q9M3V0/39-353	7.6

SANT_PAX_merged_pruned

SANT

1495

TP

ST

AAK43932|AAK43932/13-114

3e-35

Q9LTV5|Q9LTV5/1676-1735

9.5

HTH_5+trans_reg_C	HTH_ARSR	214	TP	ST	P73808|P73808/11-92	1.7e-23	BAB62265|BAB62265/56-131	7.9
HTH_5+trans_reg_C	HTH_ASNC	2	TP	ST	Q9KEI4|Q9KEI4/3-109	2.4	CAC42846|CAC42846/7-112	2.8
HTH_5+trans_reg_C	HTH_ICLR	2	TP	ST	Q9WXS0|Q9WXS0/1-90	4.2	Q9RB23|Q9RB23/13-102	9.3
HTH_5+trans_reg_C	HTH_MARR	26	TP	ST	AAK76226|AAK76226/29-131	0.2	Q9FC41|Q9FC41/30-132	9.6

HTH_ARSR_IRF_merged_pruned	HTH_ARSR	249	TP	ST	Q58721|Q58721/9-88	7.4e-32	Q9PMB3|Q9PMB3/6-58	0.2
HTH_ARSR_IRF_merged_pruned	HTH_ASNC	78	TP	ST	O59256|O59256/2-108	0.00034	AAK87650|AAK87650/1-110	9.7
HTH_ARSR_IRF_merged_pruned	HTH_CRP	2	TP	ST	O28013|O28013/16-65	0.085	Q9XBC8|Q9XBC8/272-321	0.16
HTH_ARSR_IRF_merged_pruned	HTH_DTXR	2	TP	ST	O30276|O30276/24-122	3.6	Q9UX58|Q9UX58/26-125	7.7
HTH_ARSR_IRF_merged_pruned	HTH_ICLR	70	TP	ST	Q9RB23|Q9RB23/13-102	0.0023	Q9AGJ8|Q9AGJ8/13-98	9.3
HTH_ARSR_IRF_merged_pruned	HTH_MARR	161	TP	ST	AAK76226|AAK76226/29-131	1.1e-12	P42103|YXAD_BACSU/27-127	10
HTH_ARSR_IRF_merged_pruned	IRF	42	TP	ST	Q90643|IRF3_CHICK/8-117	0.00087	P70671|IRF3_MOUSE/1-112	9.5
HTH_ARSR_IRF_merged_pruned	PAX	54	TP	ST	O61988|O61988/26-150	0.11	O96044|O96044/1-108	8.2
HTH_ARSR_IRF_merged_pruned	TFIIE	5	TP	ST	O58353|O58353/24-163	0.027	Q9YAD5|Q9YAD5/3-141	2.6

ETS_HTH_CRP_merged_pruned	ETS	185	TP	ST	AAB70311|AAB70311/293-380	2.2e-29	O62767|O62767/1-42	2.2
ETS_HTH_CRP_merged_pruned	HTH_ARSR	76	TP	ST	P30340|SMTB_SYNP7/38-116	1.5e-10	Q9AIS2|Q9AIS2/17-102	9.7
ETS_HTH_CRP_merged_pruned	HTH_ASNC	14	TP	ST	P94329|P94329/3-112	0.65	O29671|O29671/1-104	9.6
ETS_HTH_CRP_merged_pruned	HTH_CRP	164	TP	ST	P51007|FNRL_RHOSH/181-230	1.4e-12	O50587|O50587/74-122	8.2
ETS_HTH_CRP_merged_pruned	HTH_GNTR	1	TP	ST	Q9A7E7|Q9A7E7/12-70	7.9
ETS_HTH_CRP_merged_pruned	HTH_ICLR	3	TP	ST	AAK46030|AAK46030/13-101	1.3e-06	O05148|O05148/30-117	6.6
ETS_HTH_CRP_merged_pruned	HTH_MARR	26	TP	ST	BAB56495|BAB56495/22-124	0.39	Q9PDM5|Q9PDM5/28-128	9.8

HTH_ARSR_HTH_CRP_merged_pruned	HTH_ARSR	249	TP	ST	Q58721|Q58721/9-88	1.6e-31	Q9PMB3|Q9PMB3/6-58	0.043
HTH_ARSR_HTH_CRP_merged_pruned	HTH_ASNC	130	TP	ST	O29671|O29671/1-104	2e-05	Q9S2F3|Q9S2F3/6-112	10
HTH_ARSR_HTH_CRP_merged_pruned	HTH_CRP	98	TP	ST	Q9XBC8|Q9XBC8/272-321	0.0014	O86067|O86067/181-230	9.5
HTH_ARSR_HTH_CRP_merged_pruned	HTH_DEOR	6	TP	ST	Q9UX58|Q9UX58/12-63	2.5	AAK79398|AAK79398/4-56	8.9
HTH_ARSR_HTH_CRP_merged_pruned	HTH_DTXR	5	TP	ST	Q9UX58|Q9UX58/26-125	0.73	Q9CHM1|Q9CHM1/57-160	9.6
HTH_ARSR_HTH_CRP_merged_pruned	HTH_GNTR	2	TP	ST	O88071|O88071/21-82	0.8	AAK75792|AAK75792/15-74	3.3
HTH_ARSR_HTH_CRP_merged_pruned	HTH_ICLR	100	TP	ST	AAK46030|AAK46030/13-101	6.9e-07	BAB61746|BAB61746/38-127	7.5
HTH_ARSR_HTH_CRP_merged_pruned	HTH_LUXR	2	TP	ST	Q9LCW7|Q9LCW7/145-202	8.9	Q9I2C7|Q9I2C7/145-202	8.9
HTH_ARSR_HTH_CRP_merged_pruned	HTH_MARR	242	TP	ST	AAK76226|AAK76226/29-131	1.8e-13	AAK79536|AAK79536/30-130	9.4
HTH_ARSR_HTH_CRP_merged_pruned	PAX	2	TP	ST	O02016|O02016/84-208	7	O61988|O61988/26-150	9
HTH_ARSR_HTH_CRP_merged_pruned	TFIIE	4	TP	ST	O58353|O58353/24-163	0.4	O27705|O27705/21-158	3.9

ETS_IRF_merged_pruned	ETS	184	TP	ST	Q01842|POK_DROME/395-483	2.5e-30	Q64998|Q64998/1-56	1.7
ETS_IRF_merged_pruned	IRF	64	TP	ST	P15314|IRF1_MOUSE/1-114	1.3e-53	Q9BX23|Q9BX23/1-75	0.69

HTH_5+LexA_DNA_bind	HTH_ARSR	245	TP	ST	O26985|O26985/40-118	1.3e-28	P96708|P96708/47-127	8.9
HTH_5+LexA_DNA_bind	HTH_ASNC	40	TP	ST	Q9KEI4|Q9KEI4/3-109	0.051	AAK86752|AAK86752/6-112	9.5
HTH_5+LexA_DNA_bind	HTH_ICLR	22	TP	ST	Q9WXS0|Q9WXS0/1-90	0.25	Q9RB25|Q9RB25/13-102	9.2
HTH_5+LexA_DNA_bind	HTH_MARR	75	TP	ST	AAK76226|AAK76226/29-131	0.00055	P70734|P70734/31-131	9.5
HTH_5+LexA_DNA_bind	TFIIE	3	TP	ST	Q58187|Y777_METJA/37-175	1.7	Q9UYS6|Q9UYS6/18-157	6.3

HTH_CRP_HSF_merged_pruned	HSF	83	TP	ST	Q9XW45|Q9XW45/88-194	1.2e-23	CAB16203|CAB16203/1-79	6.3
HTH_CRP_HSF_merged_pruned	HTH_ARSR	26	TP	ST	P30340|SMTB_SYNP7/38-116	9.6e-06	CAC46469|CAC46469/23-101	9.5
HTH_CRP_HSF_merged_pruned	HTH_ASNC	5	TP	ST	BAB59523|BAB59523/14-115	2.1	O28531|O28531/7-109	4.4
HTH_CRP_HSF_merged_pruned	HTH_CRP	148	TP	ST	P51007|FNRL_RHOSH/181-230	2.7e-09	AAK88131|AAK88131/206-253	7.4
HTH_CRP_HSF_merged_pruned	HTH_ICLR	2	TP	ST	AAK46030|AAK46030/13-101	0.0091	P71977|P71977/13-101	0.0091
HTH_CRP_HSF_merged_pruned	HTH_MARR	31	TP	ST	Q9ZF17|Q9ZF17/60-160	1.2	Q9K8D4|Q9K8D4/26-126	10

HTH_ARSR_ETS_merged_pruned	ETS	182	TP	ST	P41970|ELK3_HUMAN/4-89	1.1e-10	O01519|O01519/68-149	2.5
HTH_ARSR_ETS_merged_pruned	HTH_ARSR	249	TP	ST	Q58721|Q58721/9-88	2.1e-33	Q9PMB3|Q9PMB3/6-58	0.046
HTH_ARSR_ETS_merged_pruned	HTH_ASNC	123	TP	ST	O29671|O29671/1-104	8.7e-05	P45265|LRP_HAEIN/16-125	8.8
HTH_ARSR_ETS_merged_pruned	HTH_CRP	9	TP	ST	O28013|O28013/16-65	0.002	O57938|O57938/22-73	7
HTH_ARSR_ETS_merged_pruned	HTH_DEOR	2	TP	ST	O67835|O67835/7-58	3.5	Q9UX58|Q9UX58/12-63	4.5
HTH_ARSR_ETS_merged_pruned	HTH_DTXR	1	TP	ST	Q9UX58|Q9UX58/26-125	5.6
HTH_ARSR_ETS_merged_pruned	HTH_GNTR	3	TP	ST	Q9WYS0|Q9WYS0/13-71	5.6	O88071|O88071/21-82	9.5
HTH_ARSR_ETS_merged_pruned	HTH_ICLR	85	TP	ST	Q9WXS0|Q9WXS0/1-90	0.00016	Q9RDE7|Q9RDE7/15-106	10
HTH_ARSR_ETS_merged_pruned	HTH_MARR	191	TP	ST	AAK76226|AAK76226/29-131	4.1e-14	Q9F8R2|Q9F8R2/24-122	10
HTH_ARSR_ETS_merged_pruned	PAX	106	TP	ST	O61988|O61988/26-150	0.17	Q25411|Q25411/47-171	9.6
HTH_ARSR_ETS_merged_pruned	TFIIE	6	TP	ST	O58353|O58353/24-163	0.81	Q9HRC7|Q9HRC7/30-168	8.5

trans_reg_C+LexA_DNA_bind	HTH_ARSR	2	TP	ST	O59593|O59593/13-102	0.024	Q9UY03|Q9UY03/12-87	0.12
trans_reg_C+LexA_DNA_bind	HTH_ASNC	1	TP	ST	AAK86752|AAK86752/6-112	8.5
trans_reg_C+LexA_DNA_bind	HTH_LUXR	28	TP	ST	Q9CK25|Q9CK25/146-203	0.82	P73864|P73864/161-218	9.4
trans_reg_C+LexA_DNA_bind	HTH_MARR	13	TP	ST	P42195|PECS_ERWCH/45-148	0.07	Q9K3Q0|Q9K3Q0/67-168	8.1

FH_HSF_merged_pruned	FH	274	TP	ST	Q02360|FD2_DROME/89-185	2.4e-40	AAH08826|AAH08826/237-428	1.2
FH_HSF_merged_pruned	HSF	90	TP	ST	Q40152|HSF8_LYCES/36-129	1.9e-34	Q9BZA3|Q9BZA3/76-175	4.9

ETS_FH_merged_pruned	ETS	184	TP	ST	Q06546|GABA_HUMAN/319-404	1.1e-28	Q64998|Q64998/1-56	0.07
ETS_FH_merged_pruned	FH	276	TP	ST	Q02360|FD2_DROME/89-185	1e-42	O13041|O13041/1-66	5.2