RAB_SAR_merged_pruned	AAA	10	TP	ST	Q9EWW8|Q9EWW8/52-216	0.033	AAK64700|AAK64700/45-232	8.1
RAB_SAR_merged_pruned	ARF	173	TP	ST	P16587|ARF3_HUMAN/1-180	1.3e-48	Q9H516|Q9H516/1-169	0.00087
RAB_SAR_merged_pruned	G_alpha	76	TP	ST	P08239|GB01_BOVIN/12-352	0.5	AAK54043|AAK54043/13-354	9.2
RAB_SAR_merged_pruned	RAB	598	TP	ST	O18339|O18339/22-187	1.5e-99	Q39859|Q39859/1-113	2.9e-32
RAB_SAR_merged_pruned	RAN	58	TP	ST	Q9CWI7|Q9CWI7/16-216	9.7e-67	Q9UDJ5|Q9UDJ5/1-131	4.1e-05
RAB_SAR_merged_pruned	RAS	213	TP	ST	P10114|RAP2_HUMAN/1-167	1.4e-82	Q15282|Q15282/1-96	6.2e-09
RAB_SAR_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	3.2e-69	BAB55013|BAB55013/24-152	2.9e-09
RAB_SAR_merged_pruned	SAR	36	TP	ST	O04267|SARB_BRACM/4-194	1.1e-37	Q40464|Q40464/4-111	0.013
RAB_SAR_merged_pruned	small_GTPase	389	TP	ST	Q25389|Q25389/10-205	5.2e-96	Q9ZCZ8|IF2_RICPR/334-495	8.2

adenylatekinase+UvrD-helicase	AAA	10	TP	ST	Q9L1U3|Q9L1U3/217-684	1	Q9V1C5|Q9V1C5/122-317	8.6
adenylatekinase+UvrD-helicase	DEXDc	18	TP	ST	P30771|NAM7_YEAST/405-637	0.18	Q9C813|Q9C813/239-456	9.4
adenylatekinase+UvrD-helicase	DEXDc3	1	TP	ST	Q9RGW0|Q9RGW0/24-265	0.0029

AAA_G-alpha_merged_pruned	AAA	9650	TP	ST	Q9LET7|Q9LET7/417-895	7.7e-50	O74637|O74637/156-366	9.9
AAA_G-alpha_merged_pruned	ARF	13	TP	ST	O65038|O65038/1-188	1.6	Q06849|ARL2_DROME/1-180	8.8
AAA_G-alpha_merged_pruned	DEXDc	636	TP	ST	Q60560|SMB2_MESAU/187-446	1e-08	Q9GQN5|Q9GQN5/451-672	9.9
AAA_G-alpha_merged_pruned	DEXDc2	1	TP	ST	Q9P609|Q9P609/23-294	6.2
AAA_G-alpha_merged_pruned	DEXDc3	3	TP	ST	O94247|O94247/206-456	0.0017	Q9NVP9|Q9NVP9/81-395	3
AAA_G-alpha_merged_pruned	DYNc	3	TP	ST	Q9I9J5|Q9I9J5/9-252	4.1	P79135|MX1_BOVIN/41-284	7.1
AAA_G-alpha_merged_pruned	G_alpha	1	TP	ST	P87035|GBA4_USTMA/54-578	7.4
AAA_G-alpha_merged_pruned	GuKc	24	TP	ST	Q9PNB8|KGUA_CAMJE/4-188	0.14	Q9Z961|KGUA_CHLPN/18-200	9.7
AAA_G-alpha_merged_pruned	KISc	4	TP	ST	Q9SV36|Q9SV36/121-468	5.9	P28739|KLPA_EMENI/419-764	9.7
AAA_G-alpha_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	1e-08	Q9HCV3|Q9HCV3/1-441	7.3
AAA_G-alpha_merged_pruned	MUTSac	29	TP	ST	O58183|O58183/371-559	0.66	Q9HSM2|Q9HSM2/607-794	9.8
AAA_G-alpha_merged_pruned	MYSc	59	TP	ST	P34109|MYSD_DICDI/1-692	0.0086	O94477|O94477/67-767	9.7
AAA_G-alpha_merged_pruned	RAB	3	TP	ST	O18337|O18337/6-168	6.9	Q9BLF2|Q9BLF2/11-175	8.3
AAA_G-alpha_merged_pruned	RAS	2	TP	ST	Q9DED7|Q9DED7/83-248	6.9	O93563|O93563/1-166	9
AAA_G-alpha_merged_pruned	SAR	5	TP	ST	Q9U8B7|Q9U8B7/4-191	1.1	Q01474|SARB_ARATH/4-192	8.6
AAA_G-alpha_merged_pruned	small_GTPase	26	TP	ST	Q9NXU5|Q9NXU5/9-198	0.41	Q22013|Q22013/22-216	7.5

RAS_ARF_merged_pruned	AAA	5	TP	ST	P44536|ENGA_HAEIN/214-370	1.3	Q99VW0|Q99VW0/32-220	6.4
RAS_ARF_merged_pruned	ARF	173	TP	ST	P19146|ARF2_YEAST/1-180	3.9e-63	O22694|O22694/1-110	0.012
RAS_ARF_merged_pruned	G_alpha	269	TP	ST	P50146|GBI1_CHICK/12-352	3.5e-58	Q9N4F4|Q9N4F4/12-405	9.9
RAS_ARF_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	2.6e-87	Q27157|Q27157/1-126	2.3e-07
RAS_ARF_merged_pruned	RAN	58	TP	ST	P17080|RAN_HUMAN/16-216	6.4e-69	Q9UDJ5|Q9UDJ5/1-131	0.062
RAS_ARF_merged_pruned	RAS	213	TP	ST	Q01387|RAS2_NEUCR/6-191	2.6e-100	Q15282|Q15282/1-96	7.8e-15
RAS_ARF_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	7.1e-87	Q9BYZ6|Q9BYZ6/17-210	2.1e-06
RAS_ARF_merged_pruned	SAR	33	TP	ST	Q9U8B7|Q9U8B7/4-191	2.7e-05	P52885|SAR1_TOBAC/4-197	3.7
RAS_ARF_merged_pruned	small_GTPase	366	TP	ST	Q25389|Q25389/10-205	3.8e-83	Q22013|Q22013/22-216	10

GTP_EFTU+arf	AAA	22	TP	ST	O07170|EFGL_MYCTU/22-179	5.4e-06	Q99ZN8|Q99ZN8/357-544	9.8
GTP_EFTU+arf	ARF	173	TP	ST	P91924|ARF_DUGJA/1-180	4.7e-51	O22694|O22694/1-110	0.00054
GTP_EFTU+arf	G_alpha	79	TP	ST	P08539|GBA1_YEAST/20-470	0.15	P27044|GBI1_XENLA/12-352	9.5
GTP_EFTU+arf	MCM	1	TP	ST	Q57809|Y363_METJA/170-669	1.9
GTP_EFTU+arf	RAB	343	TP	ST	Q05976|RB18_LYMST/10-173	0.0015	O35509|R11B_RAT/12-175	10
GTP_EFTU+arf	RAN	50	TP	ST	P38545|RAN_PLAFA/15-214	0.02	Q9P4E9|Q9P4E9/13-214	8.9
GTP_EFTU+arf	RAS	159	TP	ST	P32252|RASB_DICDI/4-170	0.0071	Q9HFU0|Q9HFU0/7-173	7.9
GTP_EFTU+arf	RHO	4	TP	ST	P34150|RACD_DICDI/11-184	5.5	Q9HEN1|Q9HEN1/14-195	9.9
GTP_EFTU+arf	SAR	36	TP	ST	P36536|SARA_MOUSE/9-197	1e-27	Q40464|Q40464/4-111	0.51
GTP_EFTU+arf	small_GTPase	163	TP	ST	Q9WZN3|IF2_THEMA/161-358	6.2e-38	Q18773|Q18773/22-188	9.5

RAN_RAB_merged_pruned	AAA	2	TP	ST	Q56339|FLHF_TREPA/216-394	3.8	Q9EWW8|Q9EWW8/52-216	6.1
RAN_RAB_merged_pruned	ARF	173	TP	ST	P16587|ARF3_HUMAN/1-180	1.9e-40	Q9H516|Q9H516/1-169	0.00032
RAN_RAB_merged_pruned	G_alpha	39	TP	ST	P20353|GB05_DROME/14-354	0.36	Q9DC51|Q9DC51/13-353	9.9
RAN_RAB_merged_pruned	RAB	598	TP	ST	P35289|RB15_RAT/9-172	1.1e-99	Q39859|Q39859/1-113	2.4e-33
RAN_RAB_merged_pruned	RAN	58	TP	ST	Q9XJ45|Q9XJ45/19-219	2.9e-64	Q9UDJ5|Q9UDJ5/1-131	0.00028
RAN_RAB_merged_pruned	RAS	213	TP	ST	P10114|RAP2_HUMAN/1-167	5.7e-84	Q15282|Q15282/1-96	1.1e-09
RAN_RAB_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	5.6e-70	BAB55013|BAB55013/24-152	1.4e-09
RAN_RAB_merged_pruned	SAR	33	TP	ST	Q9P4C8|SAR1_PICPA/4-190	2.4e-05	P52885|SAR1_TOBAC/4-197	1.2
RAN_RAB_merged_pruned	small_GTPase	392	TP	ST	Q25389|Q25389/10-205	1.6e-99	AAK66567|AAK66567/1-59	10

AAA_RAS_merged_pruned	AAA	9676	TP	ST	Q9LET7|Q9LET7/417-895	1.7e-49	BAB36464|BAB36464/288-483	9.7
AAA_RAS_merged_pruned	ARF	18	TP	ST	O65038|O65038/1-188	0.59	P11076|ARF1_YEAST/1-180	6.9
AAA_RAS_merged_pruned	DEXDc	800	TP	ST	O67840|O67840/45-337	3.9e-07	O25379|O25379/93-325	9.9
AAA_RAS_merged_pruned	DEXDc2	1	TP	ST	Q9P609|Q9P609/23-294	3.4
AAA_RAS_merged_pruned	DEXDc3	3	TP	ST	O94247|O94247/206-456	0.00088	Q9NVP9|Q9NVP9/81-395	2.7
AAA_RAS_merged_pruned	DYNc	20	TP	ST	Q9I9J5|Q9I9J5/9-252	4.2	P20591|MX1_HUMAN/45-288	8.1
AAA_RAS_merged_pruned	G_alpha	2	TP	ST	P87035|GBA4_USTMA/54-578	3.5	P25157|GBAL_DROME/112-456	5.7
AAA_RAS_merged_pruned	GuKc	40	TP	ST	Q9X215|KGUA_THEMA/2-184	0.043	AAK79684|AAK79684/4-185	9.1
AAA_RAS_merged_pruned	KISc	7	TP	ST	O23291|O23291/46-375	2.5	Q9FHD2|Q9FHD2/426-746	9.7
AAA_RAS_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	3.5e-09	Q9HCV3|Q9HCV3/1-441	2.9
AAA_RAS_merged_pruned	MUTSac	46	TP	ST	BAB58210|BAB58210/349-534	0.14	Q9XGC9|MSH2_MAIZE/660-858	9.7
AAA_RAS_merged_pruned	MYSc	145	TP	ST	P34109|MYSD_DICDI/1-692	0.0083	Q9U3U9|Q9U3U9/86-749	9.9
AAA_RAS_merged_pruned	RAB	28	TP	ST	Q9BLF2|Q9BLF2/11-175	1.1	Q9XI98|Q9XI98/9-179	9.2
AAA_RAS_merged_pruned	RAS	9	TP	ST	Q9W5G7|Q9W5G7/61-229	3.7	P11234|RALB_HUMAN/12-179	8.5
AAA_RAS_merged_pruned	SAR	17	TP	ST	Q9U8B7|Q9U8B7/4-191	0.45	O65007|O65007/4-192	9.4
AAA_RAS_merged_pruned	small_GTPase	43	TP	ST	Q9NXU5|Q9NXU5/9-198	0.14	BAB60894|BAB60894/2-180	9.5

RAS_GuKc_merged_pruned	AAA	7	TP	ST	Q9X215|KGUA_THEMA/2-192	8.4e-48	Q9L2F2|Q9L2F2/422-609	9.1
RAS_GuKc_merged_pruned	ARF	17	TP	ST	P40617|ARL4_HUMAN/1-190	0.0064	Q9CQW2|Q9CQW2/1-185	9.4
RAS_GuKc_merged_pruned	GuKc	218	TP	ST	P93757|P93757/136-322	4.9e-80	Q9BXL6|Q9BXL6/826-993	6.8
RAS_GuKc_merged_pruned	MYSc	1	TP	ST	O00936|O00936/29-711	10
RAS_GuKc_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	1.2e-53	Q27157|Q27157/1-126	2.3
RAS_GuKc_merged_pruned	RAN	57	TP	ST	P17080|RAN_HUMAN/16-216	2.4e-35	Q94134|Q94134/2-128	0.046
RAS_GuKc_merged_pruned	RAS	213	TP	ST	Q01387|RAS2_NEUCR/6-191	2.7e-63	Q15282|Q15282/1-96	0.00038
RAS_GuKc_merged_pruned	RHO	233	TP	ST	P06749|RHOA_HUMAN/8-181	4.9e-46	O19018|O19018/7-133	0.02
RAS_GuKc_merged_pruned	SAR	8	TP	ST	Q9NR31|SARA_HUMAN/9-197	3.6	P36536|SARA_MOUSE/9-197	7.1
RAS_GuKc_merged_pruned	small_GTPase	164	TP	ST	Q9BSI1|Q9BSI1/7-206	5e-48	P57873|IF2_PASMU/338-498	9.9

arf+SRP54	AAA	166	TP	ST	P21565|SR54_SCHPO/100-295	1.8e-80	Q9X009|Q9X009/171-317	0.66
arf+SRP54	ARF	173	TP	ST	P35676|ARF1_DROME/1-180	3.3e-101	Q9HEQ4|Q9HEQ4/1-93	1.5e-06
arf+SRP54	G_alpha	204	TP	ST	CAC39211|CAC39211/341-714	0.017	P30677|GB14_MOUSE/15-354	9.7
arf+SRP54	RAB	395	TP	ST	Q9SXT5|Q9SXT5/9-172	0.00095	AAH06081|AAH06081/12-175	9.9
arf+SRP54	RAS	69	TP	ST	P01113|RASH_MSV/1-166	0.22	Q05147|RASK_XENLA/1-166	9.9
arf+SRP54	SAR	36	TP	ST	Q01475|SAR1_SCHPO/4-190	1.9e-69	Q40464|Q40464/4-111	0.00012
arf+SRP54	small_GTPase	139	TP	ST	Q9NHB8|Q9NHB8/18-169	3.5e-69	P41776|GBI_HOMAM/123-317	9.8

RAB_RHO_merged_pruned	AAA	3	TP	ST	P74120|ENGA_SYNY3/175-320	1.2	Q9EWW8|Q9EWW8/52-216	3.7
RAB_RHO_merged_pruned	ARF	173	TP	ST	P16587|ARF3_HUMAN/1-180	3.1e-32	Q9H516|Q9H516/1-169	0.0063
RAB_RHO_merged_pruned	G_alpha	112	TP	ST	Q9NL93|Q9NL93/13-353	0.0067	Q9DG27|Q9DG27/13-353	9.9
RAB_RHO_merged_pruned	GuKc	1	TP	ST	Q9FVC5|Q9FVC5/135-321	5
RAB_RHO_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	1.9e-95	Q39859|Q39859/1-113	4.9e-32
RAB_RHO_merged_pruned	RAN	58	TP	ST	P17080|RAN_HUMAN/16-216	1.4e-62	Q9UDJ5|Q9UDJ5/1-131	7.5e-06
RAB_RHO_merged_pruned	RAS	213	TP	ST	P10114|RAP2_HUMAN/1-167	2.4e-79	Q15282|Q15282/1-96	2.9e-09
RAB_RHO_merged_pruned	RHO	238	TP	ST	P48148|RHO1_DROME/8-181	6.6e-95	BAB55013|BAB55013/24-152	4.9e-17
RAB_RHO_merged_pruned	SAR	34	TP	ST	Q9U8B7|Q9U8B7/4-191	1.2e-05	Q9H029|Q9H029/1-129	8.3
RAB_RHO_merged_pruned	small_GTPase	398	TP	ST	Q25389|Q25389/10-205	4e-93	P28052|GBA3_CAEEL/149-347	9

RAN_ARF_merged_pruned	AAA	7	TP	ST	Q9EWW8|Q9EWW8/52-216	1	Q44758|FLHF_BORBU/173-356	9.2
RAN_ARF_merged_pruned	ARF	173	TP	ST	P19146|ARF2_YEAST/1-180	2.4e-90	Q9HEQ4|Q9HEQ4/1-93	5.3e-06
RAN_ARF_merged_pruned	G_alpha	271	TP	ST	P04898|GBI1_HUMAN/12-352	6.5e-76	Q9UDU9|Q9UDU9/37-242	8.4
RAN_ARF_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	7.6e-85	O60795|O60795/3-132	1.7e-06
RAN_ARF_merged_pruned	RAN	58	TP	ST	P41917|RAN2_ARATH/19-220	3.9e-119	Q9UDJ5|Q9UDJ5/1-131	2.6e-06
RAN_ARF_merged_pruned	RAS	213	TP	ST	P01112|RASH_HUMAN/1-166	7.8e-87	Q15282|Q15282/1-96	8.9e-09
RAN_ARF_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	2.8e-90	O19018|O19018/7-133	4.4e-09
RAN_ARF_merged_pruned	SAR	33	TP	ST	Q9U8B7|Q9U8B7/4-191	1.2e-09	O24116|O24116/1-126	0.015
RAN_ARF_merged_pruned	small_GTPase	361	TP	ST	Q25389|Q25389/10-205	3e-83	P81128|P81128/129-250	9.7

AAA_SAR_merged_pruned	AAA	9629	TP	ST	Q9LET7|Q9LET7/417-895	2.4e-53	O69736|O69736/76-254	10
AAA_SAR_merged_pruned	ARF	8	TP	ST	O65038|O65038/1-188	0.73	Q18510|Q18510/1-185	9.5
AAA_SAR_merged_pruned	DEXDc	603	TP	ST	Q60560|SMB2_MESAU/187-446	7.4e-09	O69978|O69978/17-300	9.9
AAA_SAR_merged_pruned	DEXDc3	1	TP	ST	O94247|O94247/206-456	0.012
AAA_SAR_merged_pruned	G_alpha	1	TP	ST	P87035|GBA4_USTMA/54-578	5.1
AAA_SAR_merged_pruned	GuKc	29	TP	ST	Q9X215|KGUA_THEMA/2-184	0.096	P15454|KGUA_YEAST/1-186	9.7
AAA_SAR_merged_pruned	KISc	2	TP	ST	Q9N9P0|Q9N9P0/32-361	7.1	Q9SV36|Q9SV36/121-468	10
AAA_SAR_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	3.1e-09	Q9HCV3|Q9HCV3/1-441	6.1
AAA_SAR_merged_pruned	MUTSac	23	TP	ST	BAB58210|BAB58210/349-534	0.56	Q9ZEH5|MUS2_STAAU/266-451	9.9
AAA_SAR_merged_pruned	MYSc	73	TP	ST	P34109|MYSD_DICDI/1-692	0.012	Q9U1M8|Q9U1M8/7-689	10
AAA_SAR_merged_pruned	RAB	11	TP	ST	Q9BLF2|Q9BLF2/11-175	2.5	Q9XI98|Q9XI98/9-179	9.3
AAA_SAR_merged_pruned	SAR	14	TP	ST	Q9U8B7|Q9U8B7/4-191	1.1	Q99JZ4|Q99JZ4/9-197	9.9
AAA_SAR_merged_pruned	small_GTPase	27	TP	ST	Q9NXU5|Q9NXU5/9-198	0.59	P36057|SRPB_YEAST/20-221	9.9

GTP_EFTU+SRP54	AAA	157	TP	ST	P37105|SR54_BACSU/100-302	2.7e-26	O87407|ENGA_NEIGO/174-321	7.5
GTP_EFTU+SRP54	small_GTPase	22	TP	ST	AAK74712|AAK74712/443-641	1.7e-21	Q58735|Q58735/6-153	3

TK_herpes+G-alpha	ARF	14	TP	ST	P40994|ARF3_YEAST/1-181	0.21	Q9H0F7|ARL6_HUMAN/1-185	9.9
TK_herpes+G-alpha	G_alpha	291	TP	ST	O13011|O13011/13-353	1.8e-219	Q99061|Q99061/1-128	6.1
TK_herpes+G-alpha	small_GTPase	26	TP	ST	Q18205|Q18205/120-334	9.8e-106	P39110|CIN4_YEAST/1-187	6.4

AAA_GuKc_merged_pruned	AAA	9580	TP	ST	Q9LET7|Q9LET7/417-895	6.3e-54	AAK89395|AAK89395/285-462	9.9
AAA_GuKc_merged_pruned	ARF	4	TP	ST	O65038|O65038/1-188	2.8	Q02804|Q02804/1-190	9.1
AAA_GuKc_merged_pruned	DEXDc	327	TP	ST	Q60560|SMB2_MESAU/187-446	5.2e-08	P41380|IF43_NICPL/37-234	9.9
AAA_GuKc_merged_pruned	DEXDc3	1	TP	ST	O94247|O94247/206-456	0.011
AAA_GuKc_merged_pruned	DYNc	2	TP	ST	BAB59000|BAB59000/265-515	9.1	O60313|O60313/283-533	9.1
AAA_GuKc_merged_pruned	GuKc	20	TP	ST	Q9X215|KGUA_THEMA/2-184	0.002	O72738|O72738/4-190	8.5
AAA_GuKc_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	2.4e-10	Q9VF30|Q9VF30/242-752	3.1
AAA_GuKc_merged_pruned	MUTSac	18	TP	ST	Q9UYB7|Q9UYB7/373-561	0.067	O25338|MUS2_HELPY/326-510	10
AAA_GuKc_merged_pruned	MYSc	40	TP	ST	P34109|MYSD_DICDI/1-692	0.051	Q9GT15|Q9GT15/91-772	9.9
AAA_GuKc_merged_pruned	SAR	5	TP	ST	Q9U8B7|Q9U8B7/4-191	0.49	O81695|O81695/4-192	9.8
AAA_GuKc_merged_pruned	small_GTPase	24	TP	ST	P55041|GEM_MOUSE/72-241	1.3	Q9BL44|Q9BL44/4-169	9.5

recA+UvrD-helicase

AAA

281

TP

ST

P42438|RECA_ACICA/57-228

2.3e-48

Q9FDQ7|Q9FDQ7/31-138

0.0021

RAB_KISc_merged_pruned	ARF	76	TP	ST	P40617|ARL4_HUMAN/1-190	0.042	P40945|ARF2_DROME/1-179	7.2
RAB_KISc_merged_pruned	KISc	443	TP	ST	P46869|FL10_CHLRE/8-361	1.9e-178	O35070|O35070/1-140	4.2
RAB_KISc_merged_pruned	RAB	597	TP	ST	O18339|O18339/22-187	2.3e-11	Q9SJZ5|Q9SJZ5/10-148	4.6
RAB_KISc_merged_pruned	RAN	55	TP	ST	P17080|RAN_HUMAN/16-216	7.6e-06	P38543|RAN_GIALA/12-226	2.5
RAB_KISc_merged_pruned	RAS	202	TP	ST	Q9BXV4|Q9BXV4/1-153	2.7e-07	O95520|O95520/29-205	10
RAB_KISc_merged_pruned	RHO	223	TP	ST	P40793|CC42_DROME/6-179	0.00039	Q9GPQ8|RACL_DICDI/6-180	8.5
RAB_KISc_merged_pruned	small_GTPase	88	TP	ST	Q25389|Q25389/10-205	2.5e-11	Q9WTY2|Q9WTY2/44-212	7.8

SAR_GuKc_merged_pruned	AAA	8	TP	ST	Q9X215|KGUA_THEMA/2-192	1.1e-56	Q9CIV2|Q9CIV2/29-208	8.9
SAR_GuKc_merged_pruned	ARF	142	TP	ST	P32889|ARF1_HUMAN/1-180	1.8e-29	Q38921|Q38921/1-188	8.7
SAR_GuKc_merged_pruned	GuKc	219	TP	ST	P93757|P93757/136-322	4.5e-91	Q9BWY0|Q9BWY0/1-145	1.2
SAR_GuKc_merged_pruned	SAR	34	TP	ST	O04266|SARA_BRACM/4-192	7.5e-13	Q42067|Q42067/4-128	4.8
SAR_GuKc_merged_pruned	small_GTPase	28	TP	ST	O45099|O45099/18-166	5e-07	AAH03027|AAH03027/23-178	9

SAR_RAS_merged_pruned	AAA	7	TP	ST	P44536|ENGA_HAEIN/214-370	0.34	O33212|ENGA_MYCTU/198-341	6.2
SAR_RAS_merged_pruned	ARF	173	TP	ST	P32889|ARF1_HUMAN/1-180	2.8e-68	Q9HEQ4|Q9HEQ4/1-93	0.00079
SAR_RAS_merged_pruned	G_alpha	136	TP	ST	P22454|GBA2_CAEEL/13-355	0.038	Q9NL91|Q9NL91/17-376	9.9
SAR_RAS_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	3.4e-80	Q27157|Q27157/1-126	1.5e-06
SAR_RAS_merged_pruned	RAN	58	TP	ST	Q9CWI7|Q9CWI7/16-216	2.3e-64	Q9UDJ5|Q9UDJ5/1-131	0.06
SAR_RAS_merged_pruned	RAS	213	TP	ST	Q01387|RAS2_NEUCR/6-191	2.3e-95	Q28174|Q28174/1-96	4e-11
SAR_RAS_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	4e-84	Q9DAK3|Q9DAK3/17-210	1.6e-06
SAR_RAS_merged_pruned	SAR	36	TP	ST	Q01474|SARB_ARATH/4-192	5e-62	Q9H029|Q9H029/1-129	0.00097
SAR_RAS_merged_pruned	small_GTPase	339	TP	ST	Q25389|Q25389/10-205	1.3e-78	P97393|P97393/28-249	9

RAS_G-alpha_merged_pruned	AAA	1	TP	ST	Q9JV44|Q9JV44/26-220	7.4
RAS_G-alpha_merged_pruned	ARF	172	TP	ST	Q94650|ARF_PLAFA/1-180	1e-07	Q9H516|Q9H516/1-169	6
RAS_G-alpha_merged_pruned	G_alpha	294	TP	ST	P10824|GBI1_RAT/12-352	3.9e-202	O76770|O76770/151-555	0.39
RAS_G-alpha_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	1.9e-39	O60795|O60795/3-132	2.9
RAS_G-alpha_merged_pruned	RAN	57	TP	ST	P17080|RAN_HUMAN/16-216	1.1e-30	O13494|O13494/1-103	0.0037
RAS_G-alpha_merged_pruned	RAS	213	TP	ST	P52498|RSR1_CANAL/1-168	2e-48	P08644|RASK_RAT/1-96	1e-05
RAS_G-alpha_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	1.2e-35	Q9DAK3|Q9DAK3/17-210	0.088
RAS_G-alpha_merged_pruned	SAR	31	TP	ST	Q9U8B7|Q9U8B7/4-191	0.0075	P52886|SARA_ASPNG/4-189	5.8
RAS_G-alpha_merged_pruned	small_GTPase	281	TP	ST	Q18205|Q18205/120-334	2.7e-98	Q99YG1|Q99YG1/437-635	7.1

ARF_GuKc_merged_pruned	AAA	1	TP	ST	Q9X215|KGUA_THEMA/2-192	8.4e-59
ARF_GuKc_merged_pruned	ARF	123	TP	ST	P19146|ARF2_YEAST/1-180	1.5e-27	Q9NIW6|Q9NIW6/1-184	8.5
ARF_GuKc_merged_pruned	G_alpha	117	TP	ST	P50146|GBI1_CHICK/12-352	2.4e-16	Q9JID2|GB11_RAT/19-358	9.7
ARF_GuKc_merged_pruned	GuKc	218	TP	ST	P93757|P93757/136-322	1.7e-88	Q9WVQ1|Q9WVQ1/1-127	0.81
ARF_GuKc_merged_pruned	RAB	169	TP	ST	P20336|RB3A_HUMAN/23-186	3e-24	Q94663|Q94663/45-208	10
ARF_GuKc_merged_pruned	small_GTPase	28	TP	ST	Q9BSI1|Q9BSI1/7-206	2.9e-22	Q9QYT8|Q9QYT8/1-112	8

recA+SRP54

AAA

445

TP

ST

P42438|RECA_ACICA/57-228

3.3e-62

Q9KA53|Q9KA53/178-341

6.7

TK_herpes+adenylatekinase	AAA	24	TP	ST	Q9YB42|Q9YB42/9-143	1.6	Q65718|Q65718/245-423	9.8
TK_herpes+adenylatekinase	ARF	1	TP	ST	P40945|ARF2_DROME/1-179	4.4
TK_herpes+adenylatekinase	DEXDc	2	TP	ST	Q9HDY4|Q9HDY4/396-598	2.2	Q85043|Q85043/42-238	7.6
TK_herpes+adenylatekinase	GuKc	8	TP	ST	AAK79684|AAK79684/4-185	1.7	P72648|KGUA_SYNY3/9-191	9.7
TK_herpes+adenylatekinase	small_GTPase	1	TP	ST	P40945|ARF2_DROME/17-165	4.4

MYSc_RAB_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	6.5e-12	Q9SMY9|Q9SMY9/146-330	1.4e-10
MYSc_RAB_merged_pruned	ARF	141	TP	ST	P51643|ARF1_XENLA/1-180	4.3e-05	Q9XZX2|Q9XZX2/1-184	9.7
MYSc_RAB_merged_pruned	MYSc	346	TP	ST	P54697|MYSJ_DICDI/75-822	0	O94192|O94192/103-609	0.2
MYSc_RAB_merged_pruned	RAB	597	TP	ST	P24407|RAB8_HUMAN/9-172	4.8e-11	Q9BLE5|Q9BLE5/5-174	3.5
MYSc_RAB_merged_pruned	RAN	53	TP	ST	Q9VZ23|Q9VZ23/16-216	0.00011	P38543|RAN_GIALA/12-226	0.34
MYSc_RAB_merged_pruned	RAS	191	TP	ST	P34726|RAS2_PHYPO/3-169	3.1e-06	Q92468|Q92468/1-112	5.2
MYSc_RAB_merged_pruned	RHO	216	TP	ST	P40793|CC42_DROME/6-179	0.0015	Q19739|Q19739/12-175	8.9
MYSc_RAB_merged_pruned	TOP4c	2	TP	ST	Q23670|TOP2_CAEEL/728-1217	2.6	Q27537|Q27537/304-790	3.6
MYSc_RAB_merged_pruned	small_GTPase	99	TP	ST	Q9BSI1|Q9BSI1/7-206	4.3e-11	Q98SK1|Q98SK1/21-173	9.4

MYSc_RAN_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	9.1e-15	Q9SMY9|Q9SMY9/146-330	4.2e-12
MYSc_RAN_merged_pruned	MYSc	347	TP	ST	P54697|MYSJ_DICDI/75-822	0	O02693|O02693/1-157	9.5
MYSc_RAN_merged_pruned	RAB	36	TP	ST	P20336|RB3A_HUMAN/23-186	0.002	Q9W5X0|Q9W5X0/9-171	9.1
MYSc_RAN_merged_pruned	RAN	54	TP	ST	Q9VZ23|Q9VZ23/16-216	3.6e-07	Q42161|Q42161/6-114	7.6
MYSc_RAN_merged_pruned	RAS	159	TP	ST	P01112|RASH_HUMAN/1-166	4.9e-05	Q9D3D5|Q9D3D5/1-105	8.8
MYSc_RAN_merged_pruned	RHO	183	TP	ST	Q90694|G25P_CHICK/6-179	1.9e-05	Q9M559|Q9M559/11-182	9.9
MYSc_RAN_merged_pruned	TOP4c	2	TP	ST	Q27537|Q27537/304-790	7.5	Q23670|TOP2_CAEEL/728-1217	8.6
MYSc_RAN_merged_pruned	small_GTPase	17	TP	ST	P10948|RB3B_BOVIN/7-206	0.0001	Q9XXA4|Q9XXA4/186-383	9.8

SAR_G-alpha_merged_pruned	ARF	173	TP	ST	P16587|ARF3_HUMAN/1-180	5.9e-21	Q9VHV5|Q9VHV5/4-185	3.2
SAR_G-alpha_merged_pruned	G_alpha	294	TP	ST	P10824|GBI1_RAT/12-352	7.3e-220	O76770|O76770/151-555	0.022
SAR_G-alpha_merged_pruned	RAS	1	TP	ST	P52498|RSR1_CANAL/1-168	5.1
SAR_G-alpha_merged_pruned	SAR	35	TP	ST	Q01474|SARB_ARATH/4-192	5e-14	Q40464|Q40464/4-111	0.015
SAR_G-alpha_merged_pruned	small_GTPase	85	TP	ST	Q18205|Q18205/120-334	5.8e-104	Q9U4F7|Q9U4F7/30-221	8.2

AAA_RHO_merged_pruned	AAA	9628	TP	ST	Q9LET7|Q9LET7/417-895	4.9e-51	Q9VF56|Q9VF56/127-318	9.9
AAA_RHO_merged_pruned	ARF	14	TP	ST	Q9XZX2|Q9XZX2/1-184	1.4	P37996|ARL3_RAT/1-181	7.5
AAA_RHO_merged_pruned	DEXDc	698	TP	ST	Q09820|YAC6_SCHPO/389-630	1.3e-06	O93120|ETF1_VACCA/15-200	10
AAA_RHO_merged_pruned	DEXDc2	1	TP	ST	Q9P609|Q9P609/23-294	7
AAA_RHO_merged_pruned	DEXDc3	3	TP	ST	O94247|O94247/206-456	0.0015	Q9NVP9|Q9NVP9/81-395	7.5
AAA_RHO_merged_pruned	DYNc	10	TP	ST	Q9I9J5|Q9I9J5/9-252	6.5	P79135|MX1_BOVIN/41-284	9.8
AAA_RHO_merged_pruned	G_alpha	1	TP	ST	P87035|GBA4_USTMA/54-578	7.2
AAA_RHO_merged_pruned	GuKc	30	TP	ST	Q9X215|KGUA_THEMA/2-184	0.038	Q9M682|Q9M682/136-322	8.4
AAA_RHO_merged_pruned	KISc	1	TP	ST	Q9N9P0|Q9N9P0/32-361	3.7
AAA_RHO_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	3.4e-09	Q9HCV3|Q9HCV3/1-441	3.6
AAA_RHO_merged_pruned	MUTSac	26	TP	ST	BAB58210|BAB58210/349-534	0.36	Q9KFU5|Q9KFU5/323-508	10
AAA_RHO_merged_pruned	MYSc	106	TP	ST	P34109|MYSD_DICDI/1-692	0.024	Q9V4M6|Q9V4M6/64-772	9.8
AAA_RHO_merged_pruned	RAB	7	TP	ST	Q9BLF2|Q9BLF2/11-175	2.5	Q41831|Q41831/12-175	9.2
AAA_RHO_merged_pruned	RAS	6	TP	ST	O93563|O93563/1-166	2.6	P01117|RASK_MSVKI/1-166	8.7
AAA_RHO_merged_pruned	SAR	19	TP	ST	Q9U8B7|Q9U8B7/4-191	0.42	O24113|O24113/4-193	9.9
AAA_RHO_merged_pruned	small_GTPase	35	TP	ST	Q9NXU5|Q9NXU5/9-198	0.18	Q92788|Q92788/89-254	10

RHO_ARF_merged_pruned	AAA	7	TP	ST	P44536|ENGA_HAEIN/214-370	6	Q99RL8|Q99RL8/26-230	10
RHO_ARF_merged_pruned	ARF	173	TP	ST	P19146|ARF2_YEAST/1-180	8.2e-55	O22694|O22694/1-110	0.0015
RHO_ARF_merged_pruned	DYNc	3	TP	ST	BAB59000|BAB59000/265-515	0.53	Q9V6Z2|Q9V6Z2/276-525	3.3
RHO_ARF_merged_pruned	G_alpha	272	TP	ST	Q9UGA4|Q9UGA4/13-353	2.2e-44	Q9LI02|Q9LI02/443-845	6.4
RHO_ARF_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	4.7e-86	O60795|O60795/3-132	3.6e-09
RHO_ARF_merged_pruned	RAN	58	TP	ST	P17080|RAN_HUMAN/16-216	7.2e-69	Q9UDJ5|Q9UDJ5/1-131	0.00073
RHO_ARF_merged_pruned	RAS	213	TP	ST	P01112|RASH_HUMAN/1-166	2.4e-81	Q15282|Q15282/1-96	5.7e-09
RHO_ARF_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	1.1e-112	BAB55013|BAB55013/24-152	2e-25
RHO_ARF_merged_pruned	SAR	34	TP	ST	Q9U8B7|Q9U8B7/4-191	2.8e-07	Q9H029|Q9H029/1-129	5.8
RHO_ARF_merged_pruned	small_GTPase	377	TP	ST	Q25389|Q25389/10-205	9.5e-82	Q9SUG1|Q9SUG1/14-127	8.8

MYSc_ARF_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	2.9e-14	Q9SMY9|Q9SMY9/146-330	1.8e-11
MYSc_ARF_merged_pruned	ARF	48	TP	ST	P19146|ARF2_YEAST/1-180	5e-05	O45099|O45099/1-180	9.7
MYSc_ARF_merged_pruned	G_alpha	12	TP	ST	Q90846|Q90846/13-353	4.4	P04898|GBI1_HUMAN/12-352	9.2
MYSc_ARF_merged_pruned	MYSc	347	TP	ST	P54697|MYSJ_DICDI/75-822	0	O02693|O02693/1-157	7.6
MYSc_ARF_merged_pruned	RAB	8	TP	ST	P11023|RB3A_BOVIN/22-185	0.29	Q9CXQ1|Q9CXQ1/31-194	4.9
MYSc_ARF_merged_pruned	small_GTPase	5	TP	ST	P10948|RB3B_BOVIN/7-206	0.1	Q16948|Q16948/10-205	1.4

adenylatekinase+ras	AAA	175	TP	ST	AAK88910|AAK88910/41-228	0.092	Q9KTW7|Q9KTW7/204-341	10
adenylatekinase+ras	ARF	168	TP	ST	O18237|O18237/4-185	6.4e-06	Q9NIW6|Q9NIW6/1-184	2.5
adenylatekinase+ras	DEXDc	2	TP	ST	Q9VR29|Q9VR29/45-235	2.3	Q9FZC3|Q9FZC3/48-274	5.1
adenylatekinase+ras	G_alpha	5	TP	ST	Q25408|Q25408/9-385	1.8	Q9BIG2|Q9BIG2/12-367	8.6
adenylatekinase+ras	GuKc	1	TP	ST	Q9PNB8|KGUA_CAMJE/4-188	0.72
adenylatekinase+ras	RAB	598	TP	ST	Q41022|Q41022/16-180	3e-92	O60795|O60795/3-132	2.1e-20
adenylatekinase+ras	RAN	58	TP	ST	P32835|GSP1_YEAST/18-219	1.4e-53	Q9UDJ5|Q9UDJ5/1-131	0.2
adenylatekinase+ras	RAS	213	TP	ST	P34729|RAS1_PHYPO/1-167	1.4e-87	Q15282|Q15282/1-96	6.2e-08
adenylatekinase+ras	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	9.2e-73	O94844|O94844/17-210	2.4e-06
adenylatekinase+ras	SAR	27	TP	ST	P78976|SAR1_TRIRE/4-189	0.026	O80489|O80489/4-192	9
adenylatekinase+ras	small_GTPase	315	TP	ST	P36861|YPT2_VOLCA/1-193	7.4e-93	Q94768|Q94768/2-58	9.5

recA+arf	AAA	281	TP	ST	P42438|RECA_ACICA/57-228	1.8e-70	Q9FDQ7|Q9FDQ7/31-138	2.1e-09
recA+arf	ARF	173	TP	ST	BAB63222|BAB63222/1-181	4e-38	Q9HEQ4|Q9HEQ4/1-93	0.067
recA+arf	G_alpha	3	TP	ST	P50147|GBI2_CHICK/12-353	6	P30669|GBAS_SCHMA/19-378	9.8
recA+arf	SAR	35	TP	ST	P20606|SAR1_YEAST/7-190	2.5e-14	Q9H029|Q9H029/1-129	0.19
recA+arf	TOP2c	1	TP	ST	Q9FAU2|Q9FAU2/1-475	8.6
recA+arf	small_GTPase	65	TP	ST	O45099|O45099/18-166	7.5e-16	Q9D1Z5|Q9D1Z5/4-178	4.2

MYSc_KISc_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	2.2e-11	Q9SMY9|Q9SMY9/146-330	3.9e-09
MYSc_KISc_merged_pruned	KISc	437	TP	ST	P46869|FL10_CHLRE/8-361	4e-143	Q99PT7|Q99PT7/1-138	5.2
MYSc_KISc_merged_pruned	MYSc	342	TP	ST	P54697|MYSJ_DICDI/75-822	0	BAB47412|BAB47412/51-366	0.44

SAR_RHO_merged_pruned	ARF	173	TP	ST	P32889|ARF1_HUMAN/1-180	1.7e-65	Q9HEQ4|Q9HEQ4/1-93	0.0025
SAR_RHO_merged_pruned	G_alpha	52	TP	ST	O15976|GB0_PATYE/12-355	0.15	P10823|GBA2_YEAST/100-447	9.7
SAR_RHO_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	2.8e-79	O60795|O60795/3-132	3.1e-06
SAR_RHO_merged_pruned	RAN	58	TP	ST	Q9CWI7|Q9CWI7/16-216	7.7e-64	Q9UDJ5|Q9UDJ5/1-131	0.059
SAR_RHO_merged_pruned	RAS	213	TP	ST	P01112|RASH_HUMAN/1-166	2.1e-75	Q15282|Q15282/1-96	1.2e-05
SAR_RHO_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	6.7e-108	BAB55013|BAB55013/24-152	9.7e-18
SAR_RHO_merged_pruned	SAR	36	TP	ST	Q01474|SARB_ARATH/4-192	1.2e-57	Q9H029|Q9H029/1-129	0.018
SAR_RHO_merged_pruned	small_GTPase	324	TP	ST	Q25389|Q25389/10-205	1.7e-74	Q9UDJ0|Q9UDJ0/1-83	8.6

adenylatekinase+recA

AAA

281

TP

ST

P42438|RECA_ACICA/57-228

1.5e-69

Q9FDQ7|Q9FDQ7/31-138

2e-08

TK_herpes+SRP54

AAA

163

TP

ST

AAG58573|AAG58573/293-484

2.1e-39

O67266|FLHF_AQUAE/171-337

5.7

RAB_G-alpha_merged_pruned	AAA	9	TP	ST	AAK88910|AAK88910/41-228	2.6	AAK75347|AAK75347/30-217	10
RAB_G-alpha_merged_pruned	ARF	173	TP	ST	P16587|ARF3_HUMAN/1-180	1.8e-31	Q9H516|Q9H516/1-169	0.0097
RAB_G-alpha_merged_pruned	DEXDc	1	TP	ST	Q9LZQ9|Q9LZQ9/59-249	6.3
RAB_G-alpha_merged_pruned	G_alpha	294	TP	ST	P10824|GBI1_RAT/12-352	6.4e-186	O76770|O76770/151-555	0.8
RAB_G-alpha_merged_pruned	RAB	598	TP	ST	O18339|O18339/22-187	1.5e-62	Q39859|Q39859/1-113	5.6e-11
RAB_G-alpha_merged_pruned	RAN	58	TP	ST	P17080|RAN_HUMAN/16-216	3.9e-37	Q9UDJ5|Q9UDJ5/1-131	5.4
RAB_G-alpha_merged_pruned	RAS	213	TP	ST	P79800|RASK_MELGA/1-166	1.5e-45	Q15282|Q15282/1-96	9.6e-05
RAB_G-alpha_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	1.4e-38	Q17031|CC42_ANOGA/1-122	0.00017
RAB_G-alpha_merged_pruned	SAR	34	TP	ST	Q9U8B7|Q9U8B7/4-191	4.2e-07	Q9H029|Q9H029/1-129	7.7
RAB_G-alpha_merged_pruned	small_GTPase	367	TP	ST	Q18205|Q18205/120-334	9.5e-94	Q9SUG1|Q9SUG1/14-127	9

RAN_G-alpha_merged_pruned	ARF	170	TP	ST	P40994|ARF3_YEAST/1-181	8.1e-07	Q9HEQ4|Q9HEQ4/1-93	1.2
RAN_G-alpha_merged_pruned	G_alpha	294	TP	ST	P10824|GBI1_RAT/12-352	3e-212	O76770|O76770/151-555	0.023
RAN_G-alpha_merged_pruned	RAB	595	TP	ST	P20336|RB3A_HUMAN/23-186	8.9e-25	AAK61236|AAK61236/15-177	9
RAN_G-alpha_merged_pruned	RAN	57	TP	ST	P38546|RAN1_LYCES/19-220	8.1e-15	Q94134|Q94134/2-128	0.4
RAN_G-alpha_merged_pruned	RAS	213	TP	ST	P08642|RASH_CHICK/1-166	5.1e-28	P34443|RASL_CAEEL/11-177	0.17
RAN_G-alpha_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	4.9e-28	O19018|O19018/7-133	3.3
RAN_G-alpha_merged_pruned	SAR	31	TP	ST	Q9SDK4|Q9SDK4/4-192	0.033	O24116|O24116/1-126	7.2
RAN_G-alpha_merged_pruned	small_GTPase	215	TP	ST	Q18205|Q18205/120-334	4.3e-103	Q9HIY4|Q9HIY4/5-163	8.7

RAN_RAS_merged_pruned	AAA	18	TP	ST	P44536|ENGA_HAEIN/214-370	0.25	P21449|MDR2_CRIGR/418-610	9.5
RAN_RAS_merged_pruned	ARF	168	TP	ST	O18237|O18237/4-185	0.00011	Q9FZ18|Q9FZ18/1-184	5
RAN_RAS_merged_pruned	G_alpha	3	TP	ST	P16378|GB01_DROME/13-353	4.2	Q9C133|Q9C133/11-353	7.5
RAN_RAS_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	2.9e-91	Q94149|Q94149/12-127	4.6e-08
RAN_RAS_merged_pruned	RAN	58	TP	ST	P54765|RANA_LOTJA/7-208	3.8e-76	Q9UDJ5|Q9UDJ5/1-131	0.008
RAN_RAS_merged_pruned	RAS	213	TP	ST	Q01387|RAS2_NEUCR/6-191	1.7e-106	Q28174|Q28174/1-96	1.9e-17
RAN_RAS_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	7.5e-96	O94844|O94844/17-210	1e-08
RAN_RAS_merged_pruned	SAR	18	TP	ST	P36536|SARA_MOUSE/9-197	0.071	O65007|O65007/4-192	9.8
RAN_RAS_merged_pruned	small_GTPase	329	TP	ST	Q16948|Q16948/10-205	6e-87	P97393|P97393/28-249	9.8

G-alpha_KISc_merged_pruned	DEXDc	1	TP	ST	Q9BX63|Q9BX63/17-441	6.2
G-alpha_KISc_merged_pruned	G_alpha	284	TP	ST	Q9UGA4|Q9UGA4/13-353	9.2e-108	Q9N4F4|Q9N4F4/12-405	6.9
G-alpha_KISc_merged_pruned	KISc	443	TP	ST	Q90640|Q90640/8-346	3.6e-172	O35070|O35070/1-140	5.9
G-alpha_KISc_merged_pruned	small_GTPase	25	TP	ST	P38401|GBI1_CAVPO/118-310	2.1e-50	Q9Y204|Q9Y204/96-260	1.9e-08

fer4_NifH+SRP54

AAA

163

TP

ST

P37105|SR54_BACSU/100-302

6.1e-61

Q9L776|Q9L776/351-545

4.9

RHO_GuKc_merged_pruned	AAA	3	TP	ST	Q9X215|KGUA_THEMA/2-192	4.7e-48	AAK64915|AAK64915/39-226	5.3
RHO_GuKc_merged_pruned	ARF	37	TP	ST	P40617|ARL4_HUMAN/1-190	0.0097	Q9XZX2|Q9XZX2/1-184	8.7
RHO_GuKc_merged_pruned	GuKc	215	TP	ST	P93757|P93757/136-322	1.8e-79	Q9BXL6|Q9BXL6/826-993	2.2
RHO_GuKc_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	1.1e-51	O60795|O60795/3-132	7.2
RHO_GuKc_merged_pruned	RAN	57	TP	ST	P17080|RAN_HUMAN/16-216	2.3e-36	Q94134|Q94134/2-128	0.62
RHO_GuKc_merged_pruned	RAS	210	TP	ST	P10114|RAP2_HUMAN/1-167	3.2e-46	AAF74295|AAF74295/1-96	8.2
RHO_GuKc_merged_pruned	RHO	238	TP	ST	P24406|RHOA_CANFA/8-181	2.1e-67	Q9BYZ6|Q9BYZ6/17-210	1.6e-07
RHO_GuKc_merged_pruned	small_GTPase	152	TP	ST	Q9BSI1|Q9BSI1/7-206	9.9e-48	Q9JHW8|Q9JHW8/398-566	8.5

RAN_SAR_merged_pruned	AAA	1	TP	ST	Q9EWW8|Q9EWW8/52-216	0.99
RAN_SAR_merged_pruned	ARF	173	TP	ST	P32889|ARF1_HUMAN/1-180	4.9e-86	Q9HEQ4|Q9HEQ4/1-93	6.1e-05
RAN_SAR_merged_pruned	G_alpha	34	TP	ST	P50146|GBI1_CHICK/12-352	1.6	P08539|GBA1_YEAST/20-470	9.6
RAN_SAR_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	2e-81	O60795|O60795/3-132	0.00015
RAN_SAR_merged_pruned	RAN	58	TP	ST	P41917|RAN2_ARATH/19-220	3.2e-114	Q9UDJ5|Q9UDJ5/1-131	0.00019
RAN_SAR_merged_pruned	RAS	213	TP	ST	P01112|RASH_HUMAN/1-166	2.4e-84	Q15282|Q15282/1-96	2.6e-06
RAN_SAR_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	2.9e-92	O19018|O19018/7-133	9.9e-07
RAN_SAR_merged_pruned	SAR	36	TP	ST	Q01474|SARB_ARATH/4-192	3.3e-92	Q9H029|Q9H029/1-129	4.1e-05
RAN_SAR_merged_pruned	small_GTPase	320	TP	ST	Q25389|Q25389/10-205	4.3e-77	O13055|O13055/120-335	9.6

RAN_KISc_merged_pruned	KISc	443	TP	ST	P46869|FL10_CHLRE/8-361	2.6e-191	O35070|O35070/1-140	0.0054
RAN_KISc_merged_pruned	RAB	29	TP	ST	P20336|RB3A_HUMAN/23-186	0.24	O95716|RB3D_HUMAN/23-186	7.8
RAN_KISc_merged_pruned	RAN	44	TP	ST	Q9XJ45|Q9XJ45/19-219	0.07	P28748|SPI1_SCHPO/15-216	8.7
RAN_KISc_merged_pruned	RAS	110	TP	ST	P08642|RASH_CHICK/1-166	0.0017	P01120|RAS2_YEAST/7-173	9.1
RAN_KISc_merged_pruned	RHO	68	TP	ST	O61287|O61287/6-179	0.15	Q9BTB4|Q9BTB4/6-179	9.6
RAN_KISc_merged_pruned	small_GTPase	15	TP	ST	O17915|O17915/1-171	0.016	P38545|RAN_PLAFA/3-171	5

ARF_G-alpha_merged_pruned	ARF	173	TP	ST	P19146|ARF2_YEAST/1-180	4.1e-20	Q9H516|Q9H516/1-169	2
ARF_G-alpha_merged_pruned	G_alpha	294	TP	ST	P10824|GBI1_RAT/12-352	4.8e-219	O76770|O76770/151-555	0.0026
ARF_G-alpha_merged_pruned	RAB	394	TP	ST	P20336|RB3A_HUMAN/23-186	5.1e-13	P35284|RB12_RAT/1-160	9.9
ARF_G-alpha_merged_pruned	RAS	33	TP	ST	P52498|RSR1_CANAL/1-168	0.22	Q9CXG0|Q9CXG0/1-167	9.3
ARF_G-alpha_merged_pruned	SAR	33	TP	ST	Q9U8B7|Q9U8B7/4-191	3.6e-05	P52885|SAR1_TOBAC/4-197	6.1
ARF_G-alpha_merged_pruned	small_GTPase	111	TP	ST	Q18205|Q18205/120-334	4.2e-102	O94031|O94031/39-248	9.5

adenylatekinase+SRP54

AAA

164

TP

ST

AAG58573|AAG58573/293-484

1.8e-33

Q9X009|Q9X009/171-317

7.5

RAS_RHO_merged_pruned	AAA	8	TP	ST	P44536|ENGA_HAEIN/214-370	0.093	Q9A7R6|Q9A7R6/1-148	9.3
RAS_RHO_merged_pruned	ARF	171	TP	ST	Q9VSG8|Q9VSG8/1-179	3.1e-07	Q9HEQ4|Q9HEQ4/1-93	8.8
RAS_RHO_merged_pruned	G_alpha	8	TP	ST	P22454|GBA2_CAEEL/13-355	1.2	P10825|GB0_XENLA/12-352	9.8
RAS_RHO_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	9.6e-88	Q94149|Q94149/12-127	2.2e-10
RAS_RHO_merged_pruned	RAN	58	TP	ST	P17080|RAN_HUMAN/16-216	5.8e-66	Q9UDJ5|Q9UDJ5/1-131	0.00095
RAS_RHO_merged_pruned	RAS	213	TP	ST	Q01387|RAS2_NEUCR/6-191	2.2e-94	Q15282|Q15282/1-96	7.8e-11
RAS_RHO_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	2.2e-109	BAB55013|BAB55013/24-152	3.8e-21
RAS_RHO_merged_pruned	SAR	17	TP	ST	Q9U8B7|Q9U8B7/4-191	0.25	O65007|O65007/4-192	9.8
RAS_RHO_merged_pruned	small_GTPase	353	TP	ST	Q25389|Q25389/10-205	5.9e-81	BAB58895|BAB58895/1-149	9.7

arf+ras	AAA	24	TP	ST	Q9KRR8|Q9KRR8/38-232	2	Q9JSM3|Q9JSM3/389-580	9.9
arf+ras	ARF	173	TP	ST	P34727|ARF_AJECA/1-180	4.6e-69	O22694|O22694/1-110	0.00025
arf+ras	G_alpha	35	TP	ST	Q9NL97|Q9NL97/15-355	0.79	P38402|GBI2_CAVPO/12-353	9.7
arf+ras	RAB	598	TP	ST	Q41022|Q41022/16-180	1.1e-90	Q9VYM8|Q9VYM8/9-169	1.4e-21
arf+ras	RAN	58	TP	ST	P32835|GSP1_YEAST/18-219	2.2e-48	Q9UDJ5|Q9UDJ5/1-131	2.1
arf+ras	RAS	213	TP	ST	P34729|RAS1_PHYPO/1-167	2.8e-83	P08644|RASK_RAT/1-96	1.9e-05
arf+ras	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	1.1e-72	O94844|O94844/17-210	8e-06
arf+ras	SAR	36	TP	ST	Q01475|SAR1_SCHPO/4-190	7.2e-36	Q9H029|Q9H029/1-129	0.76
arf+ras	small_GTPase	296	TP	ST	P36861|YPT2_VOLCA/1-193	9.5e-90	Q9CLQ1|TRME_PASMU/215-372	9.9

Guanylate_kin+adenylatekinase	AAA	19	TP	ST	Q9X215|KGUA_THEMA/2-192	5.8e-15	O69733|Y2G8_MYCTU/326-467	9.6
Guanylate_kin+adenylatekinase	GuKc	153	TP	ST	P15454|KGUA_YEAST/1-186	1.1e-44	AAK85987|AAK85987/14-194	7.8

MYSc_G-alpha_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	5.9e-12	Q9SMY9|Q9SMY9/146-330	6e-10
MYSc_G-alpha_merged_pruned	G_alpha	285	TP	ST	P10824|GBI1_RAT/12-352	8e-103	Q9WV53|Q9WV53/1-155	4.7
MYSc_G-alpha_merged_pruned	MYSc	346	TP	ST	P54697|MYSJ_DICDI/75-822	0	Q20357|Q20357/226-705	5.9
MYSc_G-alpha_merged_pruned	small_GTPase	25	TP	ST	O13055|O13055/120-335	5.4e-22	Q9Y204|Q9Y204/96-260	4.5e-05

GTP_EFTU+G-alpha	AAA	3	TP	ST	O07170|EFGL_MYCTU/22-179	0.00015	P44536|ENGA_HAEIN/214-370	9.7
GTP_EFTU+G-alpha	ARF	132	TP	ST	P16500|ARF2_MOUSE/1-181	0.014	P25160|ARL1_DROME/1-181	9
GTP_EFTU+G-alpha	G_alpha	286	TP	ST	O13011|O13011/13-353	8.2e-152	Q9UMV4|Q9UMV4/1-108	0.66
GTP_EFTU+G-alpha	RAB	1	TP	ST	Q9BLE7|Q9BLE7/8-173	7.9
GTP_EFTU+G-alpha	RAS	12	TP	ST	Q9NF75|Q9NF75/45-216	1.3	O57467|O57467/1-166	8
GTP_EFTU+G-alpha	SAR	10	TP	ST	Q9Y6B6|SARB_HUMAN/5-197	0.68	Q23445|SAR1_CAEEL/5-193	4.3
GTP_EFTU+G-alpha	small_GTPase	58	TP	ST	Q18205|Q18205/120-334	5.1e-69	Q9DAB3|Q9DAB3/1-165	7.7

MYSc_RAS_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	7e-13	Q9SMY9|Q9SMY9/146-330	1.7e-10
MYSc_RAS_merged_pruned	MYSc	346	TP	ST	P54697|MYSJ_DICDI/75-822	0	Q20357|Q20357/226-705	0.58
MYSc_RAS_merged_pruned	RAB	385	TP	ST	P20336|RB3A_HUMAN/23-186	0.00043	P38555|YP31_YEAST/14-177	9.9
MYSc_RAS_merged_pruned	RAN	52	TP	ST	P42558|RAN_CHICK/16-216	2.1e-05	P41915|RAN_TETTH/17-224	2.1
MYSc_RAS_merged_pruned	RAS	210	TP	ST	P04388|RAS2_DROME/3-169	3.2e-08	Q91211|Q91211/1-129	8.5
MYSc_RAS_merged_pruned	RHO	213	TP	ST	P21181|G25B_HUMAN/6-179	3.9e-05	Q19739|Q19739/12-175	8.8
MYSc_RAS_merged_pruned	small_GTPase	26	TP	ST	Q25389|Q25389/10-205	3e-06	Q9D0V6|Q9D0V6/25-199	9.9

RAN_RHO_merged_pruned	AAA	3	TP	ST	P44536|ENGA_HAEIN/214-370	2.3	Q9PPY0|Q9PPY0/480-654	9.5
RAN_RHO_merged_pruned	ARF	165	TP	ST	AAH00043|AAH00043/1-191	1.1e-06	O08697|ARL2_RAT/1-180	3.9
RAN_RHO_merged_pruned	DYNc	2	TP	ST	BAB59000|BAB59000/265-515	8.4	O60313|O60313/283-533	8.4
RAN_RHO_merged_pruned	G_alpha	4	TP	ST	Q9Y7E3|Q9Y7E3/18-361	2.3	P38404|GB0_LOCMI/13-353	7.7
RAN_RHO_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	1.3e-89	Q94149|Q94149/12-127	2.7e-11
RAN_RHO_merged_pruned	RAN	58	TP	ST	P38548|RAN_VICFA/19-220	1.4e-64	Q9UDJ5|Q9UDJ5/1-131	0.0059
RAN_RHO_merged_pruned	RAS	213	TP	ST	P01112|RASH_HUMAN/1-166	1.4e-85	Q15282|Q15282/1-96	4.2e-11
RAN_RHO_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	4.4e-121	Q9DAK3|Q9DAK3/17-210	3.8e-27
RAN_RHO_merged_pruned	SAR	4	TP	ST	Q9U8B7|Q9U8B7/4-191	0.7	AAH02847|AAH02847/5-197	9.5
RAN_RHO_merged_pruned	small_GTPase	343	TP	ST	Q25389|Q25389/10-205	5.1e-85	Q9LV96|Q9LV96/211-357	6.7

recA+fer4_NifH

AAA

281

TP

ST

P42438|RECA_ACICA/57-228

2.2e-64

Q9FDQ7|Q9FDQ7/31-138

9.1e-05

RAS_KISc_merged_pruned	KISc	443	TP	ST	P46869|FL10_CHLRE/8-361	2.7e-185	O35070|O35070/1-140	1.4
RAS_KISc_merged_pruned	RAB	237	TP	ST	Q91382|Q91382/23-186	0.0036	Q23146|Q23146/10-178	9.8
RAS_KISc_merged_pruned	RAN	51	TP	ST	P17080|RAN_HUMAN/16-216	0.013	Q9VUN3|Q9VUN3/16-217	7.7
RAS_KISc_merged_pruned	RAS	204	TP	ST	P52498|RSR1_CANAL/1-168	1.9e-07	P08644|RASK_RAT/1-96	7.2
RAS_KISc_merged_pruned	RHO	116	TP	ST	P21181|G25B_HUMAN/6-179	0.071	Q24817|RACD_ENTHI/11-184	9.7
RAS_KISc_merged_pruned	small_GTPase	24	TP	ST	Q9D9Y0|Q9D9Y0/1-172	0.00034	Q08147|Q08147/1-191	4.7

Guanylate_kin+SRP54	AAA	172	TP	ST	P37105|SR54_BACSU/100-302	8.2e-89	Q44758|FLHF_BORBU/173-356	7.6
Guanylate_kin+SRP54	GuKc	139	TP	ST	P15454|KGUA_YEAST/1-186	1.4e-16	Q9QYG9|Q9QYG9/231-406	9.5

GTP_EFTU+ras	AAA	19	TP	ST	O07170|EFGL_MYCTU/22-179	1.8e-07	O06476|O06476/28-232	8.5
GTP_EFTU+ras	ARF	166	TP	ST	O18237|O18237/4-185	5.4e-08	Q9FZ18|Q9FZ18/1-184	5.9
GTP_EFTU+ras	G_alpha	24	TP	ST	Q19572|Q19572/9-354	1.1	Q9N2V6|Q9N2V6/13-356	9.1
GTP_EFTU+ras	RAB	598	TP	ST	Q39433|RAB1_BETVU/16-180	3.2e-73	O60795|O60795/3-132	3.9e-08
GTP_EFTU+ras	RAN	57	TP	ST	P32835|GSP1_YEAST/18-219	3.5e-38	Q42161|Q42161/6-114	0.0018
GTP_EFTU+ras	RAS	213	TP	ST	P34729|RAS1_PHYPO/1-167	1.1e-69	Q15282|Q15282/1-96	9.9e-05
GTP_EFTU+ras	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	5.9e-54	O19018|O19018/7-133	9.7e-06
GTP_EFTU+ras	SAR	31	TP	ST	Q9Y6B6|SARB_HUMAN/5-197	0.00031	Q9H029|Q9H029/1-129	3.5
GTP_EFTU+ras	small_GTPase	328	TP	ST	P36861|YPT2_VOLCA/1-193	2.9e-73	O75546|O75546/7-76	9.2

TK_herpes+fer4_NifH

AAA

1

TP

ST

Q9I1E9|Q9I1E9/34-217

5.7

RAB_ARF_merged_pruned	AAA	22	TP	ST	Q9EWW8|Q9EWW8/52-216	0.11	O94226|O94226/248-485	9.8
RAB_ARF_merged_pruned	ARF	173	TP	ST	P19146|ARF2_YEAST/1-180	1.1e-50	Q9H516|Q9H516/1-169	0.0021
RAB_ARF_merged_pruned	DYNc	2	TP	ST	Q22428|Q22428/1-258	4.2	Q9U4L0|Q9U4L0/1-258	4.2
RAB_ARF_merged_pruned	G_alpha	270	TP	ST	Q9UGA4|Q9UGA4/13-353	5.1e-31	O60726|O60726/3-159	9.9
RAB_ARF_merged_pruned	RAB	598	TP	ST	O18339|O18339/22-187	7.7e-100	Q39859|Q39859/1-113	8.2e-34
RAB_ARF_merged_pruned	RAN	58	TP	ST	P17080|RAN_HUMAN/16-216	5.7e-67	Q9UDJ5|Q9UDJ5/1-131	2.3e-06
RAB_ARF_merged_pruned	RAS	213	TP	ST	P10114|RAP2_HUMAN/1-167	2.2e-82	Q15282|Q15282/1-96	2.4e-10
RAB_ARF_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	6.7e-78	BAB55013|BAB55013/24-152	5.4e-11
RAB_ARF_merged_pruned	SAR	33	TP	ST	Q9U8B7|Q9U8B7/4-191	3.2e-08	O24116|O24116/1-126	0.013
RAB_ARF_merged_pruned	small_GTPase	424	TP	ST	Q25389|Q25389/10-205	7.5e-96	Q9U4F7|Q9U4F7/30-221	9.3

RAB_GuKc_merged_pruned	AAA	8	TP	ST	Q9X215|KGUA_THEMA/2-192	5.3e-42	AAK64915|AAK64915/39-226	8.4
RAB_GuKc_merged_pruned	ARF	165	TP	ST	P16587|ARF3_HUMAN/1-180	1.1e-19	P34212|ARFL_CAEEL/1-177	1.2
RAB_GuKc_merged_pruned	GuKc	213	TP	ST	P93757|P93757/136-322	1.7e-68	Q9BXL6|Q9BXL6/826-993	7.7
RAB_GuKc_merged_pruned	RAB	598	TP	ST	O18339|O18339/22-187	1.1e-73	Q39859|Q39859/1-113	3.8e-20
RAB_GuKc_merged_pruned	RAN	57	TP	ST	P17080|RAN_HUMAN/16-216	3.1e-45	Q42161|Q42161/6-114	0.0051
RAB_GuKc_merged_pruned	RAS	213	TP	ST	P10114|RAP2_HUMAN/1-167	2.3e-53	P08644|RASK_RAT/1-96	3.6
RAB_GuKc_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	4.1e-49	BAB55013|BAB55013/24-152	0.04
RAB_GuKc_merged_pruned	SAR	6	TP	ST	Q9U8B7|Q9U8B7/4-191	0.053	Q9SDQ5|Q9SDQ5/4-192	10
RAB_GuKc_merged_pruned	small_GTPase	260	TP	ST	Q9BSI1|Q9BSI1/7-206	1.7e-71	P57812|ENGA_PASMU/219-394	9.2

MYSc_SAR_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	8e-14	Q9SMY9|Q9SMY9/146-330	3.5e-11
MYSc_SAR_merged_pruned	ARF	40	TP	ST	P51822|ARF1_DAUCA/1-180	1	Q10943|ARF1_CAEEL/1-180	6.5
MYSc_SAR_merged_pruned	MYSc	347	TP	ST	P54697|MYSJ_DICDI/75-822	0	O02693|O02693/1-157	2.4
MYSc_SAR_merged_pruned	SAR	2	TP	ST	Q01474|SARB_ARATH/4-192	6.2	O04834|SARA_ARATH/4-192	6.6

AAA_KISc_merged_pruned	AAA	9620	TP	ST	Q9LET7|Q9LET7/417-895	1.6e-53	O27166|O27166/263-445	9.9
AAA_KISc_merged_pruned	ARF	19	TP	ST	Q18510|Q18510/1-185	1.6	AAH00043|AAH00043/1-191	9.5
AAA_KISc_merged_pruned	DEXDc	868	TP	ST	Q60560|SMB2_MESAU/187-446	1.6e-08	P38899|YH18_YEAST/297-510	9.9
AAA_KISc_merged_pruned	DEXDc3	3	TP	ST	O94247|O94247/206-456	0.0044	Q9NVP9|Q9NVP9/81-395	4.3
AAA_KISc_merged_pruned	DYNc	3	TP	ST	Q94464|Q94464/1-247	5.5	Q09748|YB68_SCHPO/1-279	9.4
AAA_KISc_merged_pruned	G_alpha	2	TP	ST	P87035|GBA4_USTMA/54-578	5.3	O76584|O76584/7-362	6.7
AAA_KISc_merged_pruned	GuKc	23	TP	ST	Q9PNB8|KGUA_CAMJE/4-188	0.005	AAH09914|AAH09914/3-189	9.8
AAA_KISc_merged_pruned	KISc	10	TP	ST	Q9SV36|Q9SV36/121-468	3.4	Q9NKI4|Q9NKI4/46-378	8.2
AAA_KISc_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	1.3e-10	Q9HCV3|Q9HCV3/1-441	7.6
AAA_KISc_merged_pruned	MUTSac	31	TP	ST	O58183|O58183/371-559	0.21	AAK80974|AAK80974/420-598	9.6
AAA_KISc_merged_pruned	MYSc	84	TP	ST	P34109|MYSD_DICDI/1-692	0.11	O94477|O94477/67-767	9.9
AAA_KISc_merged_pruned	RAB	1	TP	ST	P32939|YPT7_YEAST/9-179	9.3
AAA_KISc_merged_pruned	SAR	13	TP	ST	Q9U8B7|Q9U8B7/4-191	0.25	O04266|SARA_BRACM/4-192	9.7
AAA_KISc_merged_pruned	small_GTPase	36	TP	ST	Q9NXU5|Q9NXU5/9-198	0.11	BAB36796|BAB36796/213-387	9.5

SAR_KISc_merged_pruned

KISc

443

TP

ST

P46869|FL10_CHLRE/8-361

1.4e-195

Q00088|Q00088/2-93

0.0068

ARF_KISc_merged_pruned

KISc

443

TP

ST

P46869|FL10_CHLRE/8-361

5.9e-194

Q00088|Q00088/2-93

0.31

AAA_RAB_merged_pruned	AAA	9614	TP	ST	Q9LET7|Q9LET7/417-895	7.5e-49	Q27813|Q27813/33-136	10
AAA_RAB_merged_pruned	ARF	9	TP	ST	O65038|O65038/1-188	4.1	Q9SHU5|ARF4_ARATH/1-180	9
AAA_RAB_merged_pruned	DEXDc	673	TP	ST	Q60560|SMB2_MESAU/187-446	2e-09	Q9A0Q3|Q9A0Q3/2-187	10
AAA_RAB_merged_pruned	DEXDc3	3	TP	ST	O94247|O94247/206-456	1.5e-06	Q9NVP9|Q9NVP9/81-395	4.4
AAA_RAB_merged_pruned	DYNc	1	TP	ST	Q9I9J5|Q9I9J5/9-252	9.5
AAA_RAB_merged_pruned	G_alpha	2	TP	ST	P87035|GBA4_USTMA/54-578	2.9	P25157|GBAL_DROME/112-456	8.8
AAA_RAB_merged_pruned	GuKc	20	TP	ST	Q9X215|KGUA_THEMA/2-184	0.072	Q9M681|Q9M681/136-322	9.3
AAA_RAB_merged_pruned	KISc	5	TP	ST	Q9SV36|Q9SV36/121-468	5	Q9SCJ4|Q9SCJ4/12-353	9.8
AAA_RAB_merged_pruned	MCM	110	TP	ST	Q9SF37|Q9SF37/141-678	2.1e-05	P53091|MCM6_YEAST/272-836	9.7
AAA_RAB_merged_pruned	MUTSac	18	TP	ST	O63852|MSHM_SARGL/691-876	2.8	AAK80974|AAK80974/420-598	8.7
AAA_RAB_merged_pruned	MYSc	76	TP	ST	P34109|MYSD_DICDI/1-692	0.0066	Q9UA70|Q9UA70/1-821	10
AAA_RAB_merged_pruned	RAB	3	TP	ST	Q9BLF2|Q9BLF2/11-175	4	Q9N9P9|Q9N9P9/22-185	9.5
AAA_RAB_merged_pruned	RAS	10	TP	ST	O93563|O93563/1-166	1.5	P08647|RAS_SCHPO/6-172	9.9
AAA_RAB_merged_pruned	SAR	1	TP	ST	Q9U8B7|Q9U8B7/4-191	0.68
AAA_RAB_merged_pruned	small_GTPase	25	TP	ST	Q9VCE5|Q9VCE5/9-195	0.034	BAB36796|BAB36796/213-387	9.8

AAA_RAN_merged_pruned	AAA	9691	TP	ST	Q9LET7|Q9LET7/417-895	2.3e-52	Q9WYV0|UVRA_THEMA/23-542	9.8
AAA_RAN_merged_pruned	ARF	37	TP	ST	Q9CQB1|Q9CQB1/1-191	0.13	Q9N6B0|Q9N6B0/1-179	9.6
AAA_RAN_merged_pruned	DEXDc	826	TP	ST	O67840|O67840/45-337	3.1e-07	Q9HMT9|Q9HMT9/23-438	9.9
AAA_RAN_merged_pruned	DEXDc2	1	TP	ST	Q9P609|Q9P609/23-294	4.6
AAA_RAN_merged_pruned	DEXDc3	4	TP	ST	O94247|O94247/206-456	0.028	Q9NVP9|Q9NVP9/81-395	9.3
AAA_RAN_merged_pruned	DYNc	33	TP	ST	AAH07127|AAH07127/39-282	0.59	Q91196|Q91196/10-253	9.9
AAA_RAN_merged_pruned	G_alpha	1	TP	ST	P87035|GBA4_USTMA/54-578	0.62
AAA_RAN_merged_pruned	GuKc	41	TP	ST	Q9X215|KGUA_THEMA/2-184	0.036	Q9HYM8|Q9HYM8/2-182	8.2
AAA_RAN_merged_pruned	KISc	5	TP	ST	Q9N9P0|Q9N9P0/32-361	0.65	Q9VSW5|Q9VSW5/6-354	9.2
AAA_RAN_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	1.7e-10	Q9HCV3|Q9HCV3/1-441	3.2
AAA_RAN_merged_pruned	MUTSac	51	TP	ST	AAK81487|AAK81487/389-574	0.048	Q99UH8|Q99UH8/595-782	9.5
AAA_RAN_merged_pruned	MYSc	140	TP	ST	O24516|O24516/56-733	0.056	Q9IBD7|Q9IBD7/80-783	9.7
AAA_RAN_merged_pruned	RAB	15	TP	ST	P93267|RAB7_MESCR/9-179	0.47	O18335|O18335/12-175	10
AAA_RAN_merged_pruned	RAS	52	TP	ST	P05810|RALA_MOUSE/12-178	1.2	Q9QW70|Q9QW70/1-166	9.8
AAA_RAN_merged_pruned	SAR	30	TP	ST	Q9U8B7|Q9U8B7/4-191	0.041	Q01475|SAR1_SCHPO/4-190	6.5
AAA_RAN_merged_pruned	small_GTPase	59	TP	ST	P55041|GEM_MOUSE/72-241	0.038	P36861|YPT2_VOLCA/1-193	9.8

ras+fer4_NifH	AAA	30	TP	ST	Q9KFM8|Q9KFM8/506-690	1.2	P23174|MDR3_CRIGR/421-613	9.7
ras+fer4_NifH	ARF	167	TP	ST	Q98SK1|Q98SK1/1-190	9.7e-06	O77163|O77163/1-113	7.3
ras+fer4_NifH	RAB	598	TP	ST	Q39845|Q39845/9-172	6.2e-95	O60795|O60795/3-132	6.4e-20
ras+fer4_NifH	RAN	57	TP	ST	P32835|GSP1_YEAST/18-219	3.8e-55	Q94134|Q94134/2-128	6e-08
ras+fer4_NifH	RAS	213	TP	ST	P34729|RAS1_PHYPO/1-167	1.2e-88	Q15282|Q15282/1-96	1.3e-08
ras+fer4_NifH	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	8.7e-79	O94844|O94844/17-210	5.6e-09
ras+fer4_NifH	SAR	18	TP	ST	Q9U8B7|Q9U8B7/4-191	0.03	Q23445|SAR1_CAEEL/5-193	9.2
ras+fer4_NifH	small_GTPase	322	TP	ST	Q9LGG3|Q9LGG3/142-329	8.4e-94	Q99K16|Q99K16/170-341	9.4

Guanylate_kin+recA	AAA	282	TP	ST	P42438|RECA_ACICA/57-228	8.1e-86	Q9X215|KGUA_THEMA/2-192	0.0004
Guanylate_kin+recA	GuKc	135	TP	ST	P46195|KGUA_BOVIN/2-188	3.8e-09	P91182|P91182/282-494	4.9

MYSc_RHO_merged_pruned	AAA	2	TP	ST	O81486|O81486/131-322	1.9e-14	Q9SMY9|Q9SMY9/146-330	9.9e-12
MYSc_RHO_merged_pruned	MYSc	346	TP	ST	P54697|MYSJ_DICDI/75-822	0	Q20357|Q20357/226-705	0.082
MYSc_RHO_merged_pruned	RAB	443	TP	ST	P20336|RB3A_HUMAN/23-186	0.00034	O02046|O02046/3-165	10
MYSc_RHO_merged_pruned	RAN	52	TP	ST	Q9VZ23|Q9VZ23/16-216	6.4e-05	P41915|RAN_TETTH/17-224	4.4
MYSc_RHO_merged_pruned	RAS	196	TP	ST	Q9Y3L5|Q9Y3L5/1-167	1e-06	Q9VH66|Q9VH66/16-185	10
MYSc_RHO_merged_pruned	RHO	237	TP	ST	P15154|RAC1_HUMAN/6-179	9.9e-10	Q9BYZ6|Q9BYZ6/17-210	7.7
MYSc_RHO_merged_pruned	small_GTPase	29	TP	ST	Q25389|Q25389/10-205	3.8e-06	CAC42979|CAC42979/14-192	9.7

GuKc_KISc_merged_pruned	AAA	1	TP	ST	Q9X215|KGUA_THEMA/2-192	2.1e-15
GuKc_KISc_merged_pruned	GuKc	201	TP	ST	P93757|P93757/136-322	2.9e-30	O44222|O44222/226-407	8.5
GuKc_KISc_merged_pruned	KISc	439	TP	ST	Q90640|Q90640/8-346	9.9e-169	O35070|O35070/1-140	6

AAA_ARF_merged_pruned	AAA	9673	TP	ST	Q9LET7|Q9LET7/417-895	5.5e-52	Q9MBF8|Q9MBF8/2119-2331	9.7
AAA_ARF_merged_pruned	ARF	79	TP	ST	O65038|O65038/1-188	0.078	P36579|ARF1_SCHPO/1-179	8.2
AAA_ARF_merged_pruned	DEXDc	885	TP	ST	Q60560|SMB2_MESAU/187-446	1e-07	P42305|DEAD_BACSU/21-218	9.9
AAA_ARF_merged_pruned	DEXDc2	1	TP	ST	Q9P609|Q9P609/23-294	5.4
AAA_ARF_merged_pruned	DEXDc3	3	TP	ST	O94247|O94247/206-456	0.0017	Q9NVP9|Q9NVP9/81-395	9.5
AAA_ARF_merged_pruned	DYNc	24	TP	ST	AAH07127|AAH07127/39-282	2.6	Q91197|Q91197/10-253	9.5
AAA_ARF_merged_pruned	G_alpha	3	TP	ST	P87035|GBA4_USTMA/54-578	0.6	O76584|O76584/7-362	4.3
AAA_ARF_merged_pruned	GuKc	34	TP	ST	Q9X215|KGUA_THEMA/2-184	0.037	P15454|KGUA_YEAST/1-186	9.9
AAA_ARF_merged_pruned	KISc	10	TP	ST	Q9SV36|Q9SV36/121-468	1.3	Q99LC7|Q99LC7/36-371	8
AAA_ARF_merged_pruned	MCM	111	TP	ST	P38132|CC47_YEAST/223-725	5.9e-11	Q9HCV3|Q9HCV3/1-441	1.7
AAA_ARF_merged_pruned	MUTSac	39	TP	ST	Q9UYB7|Q9UYB7/373-561	0.08	O83348|MUTS_TREPA/619-804	9.8
AAA_ARF_merged_pruned	MYSc	120	TP	ST	P34109|MYSD_DICDI/1-692	0.04	Q9BE39|Q9BE39/79-779	10
AAA_ARF_merged_pruned	RAB	39	TP	ST	Q9W4A0|Q9W4A0/6-168	0.73	Q23146|Q23146/10-178	9.6
AAA_ARF_merged_pruned	RAS	22	TP	ST	O93563|O93563/1-166	2.7	P11234|RALB_HUMAN/12-179	9.6
AAA_ARF_merged_pruned	SAR	29	TP	ST	Q9U8B7|Q9U8B7/4-191	0.12	O65007|O65007/4-192	8.2
AAA_ARF_merged_pruned	small_GTPase	52	TP	ST	Q9VCE5|Q9VCE5/9-195	0.069	Q9LV96|Q9LV96/211-357	10

G-alpha+arf	ARF	173	TP	ST	AAK49618|AAK49618/1-181	1.5e-83	Q9H516|Q9H516/1-169	1.8e-09
G-alpha+arf	G_alpha	293	TP	ST	O13011|O13011/13-353	6.7e-214	P34044|GBA6_DICDI/1-153	0.32
G-alpha+arf	RAB	127	TP	ST	P56371|RB4A_MOUSE/9-172	0.06	Q9H0U4|Q9H0U4/9-172	10
G-alpha+arf	RAN	1	TP	ST	P38545|RAN_PLAFA/15-214	5.7
G-alpha+arf	RAS	10	TP	ST	P70425|P70425/18-184	0.42	P70426|P70426/19-185	7.6
G-alpha+arf	RHO	7	TP	ST	Q62159|RHOC_MOUSE/8-181	2.4	Q9PSX7|Q9PSX7/8-181	3.7
G-alpha+arf	SAR	36	TP	ST	Q01475|SAR1_SCHPO/4-190	4.4e-54	Q40464|Q40464/4-111	9.5e-07
G-alpha+arf	small_GTPase	136	TP	ST	Q18205|Q18205/120-334	4.1e-104	O96311|O96311/1-66	8.6

MYSc_GuKc_merged_pruned	AAA	3	TP	ST	O81486|O81486/131-322	5.1e-05	Q9X215|KGUA_THEMA/2-192	0.0066
MYSc_GuKc_merged_pruned	GuKc	120	TP	ST	P93757|P93757/136-322	9.6e-06	Q9VHK4|Q9VHK4/594-780	9.3
MYSc_GuKc_merged_pruned	MYSc	341	TP	ST	P54697|MYSJ_DICDI/75-822	0	Q62704|Q62704/1-136	1.2

kinesin+arf	ARF	173	TP	ST	P35676|ARF1_DROME/1-180	7.9e-82	O18237|O18237/4-185	0.00049
kinesin+arf	G_alpha	41	TP	ST	Q20907|Q20907/21-363	1.1	P30683|GB0_LYMST/12-352	9.5
kinesin+arf	KISc	418	TP	ST	Q61768|KINH_MOUSE/6-333	4.3e-169	O19017|O19017/1-133	10
kinesin+arf	SAR	36	TP	ST	Q01475|SAR1_SCHPO/4-190	6.6e-51	Q9H029|Q9H029/1-129	0.13
kinesin+arf	small_GTPase	67	TP	ST	O45099|O45099/18-166	2.7e-50	Q99KS1|Q99KS1/1-143	5.1

MYSc_AAA_merged_pruned	AAA	3843	TP	ST	O81486|O81486/131-322	6.1e-38	Q9TLX7|CHLI_CYACA/41-223	10
MYSc_AAA_merged_pruned	DEXDc	3	TP	ST	Q9BKQ8|Q9BKQ8/49-266	6.2	Q58524|Q58524/12-215	7
MYSc_AAA_merged_pruned	MCM	49	TP	ST	Q9SF37|Q9SF37/141-678	0.42	Q9FL33|Q9FL33/100-635	9.8
MYSc_AAA_merged_pruned	MYSc	341	TP	ST	O61080|O61080/1-685	7.8e-287	BAB47412|BAB47412/51-366	0.26

SAR_ARF_merged_pruned	ARF	173	TP	ST	P19146|ARF2_YEAST/1-180	3.1e-106	Q9HEQ4|Q9HEQ4/1-93	1.9e-05
SAR_ARF_merged_pruned	G_alpha	277	TP	ST	P50146|GBI1_CHICK/12-352	1.2e-93	O15743|O15743/55-455	8.2
SAR_ARF_merged_pruned	RAB	597	TP	ST	P20336|RB3A_HUMAN/23-186	1.8e-84	Q27157|Q27157/1-126	5.6
SAR_ARF_merged_pruned	RAN	53	TP	ST	Q9XG42|Q9XG42/13-213	0.0038	Q9PSX2|Q9PSX2/15-156	2.8
SAR_ARF_merged_pruned	RAS	196	TP	ST	Q9UQX7|RAS1_CANAL/2-168	6.9e-06	O15295|O15295/18-151	6.6
SAR_ARF_merged_pruned	RHO	193	TP	ST	Q24192|RHOL_DROME/14-178	0.0021	Q9DDV6|Q9DDV6/6-179	8.9
SAR_ARF_merged_pruned	SAR	36	TP	ST	Q01474|SARB_ARATH/4-192	2.5e-114	Q9H029|Q9H029/1-129	1.3e-07
SAR_ARF_merged_pruned	small_GTPase	253	TP	ST	Q25389|Q25389/10-205	2e-78	Q94263|Q94263/7-173	9.4

G-alpha_GuKc_merged_pruned	AAA	1	TP	ST	Q9X215|KGUA_THEMA/2-192	2.5e-41
G-alpha_GuKc_merged_pruned	ARF	6	TP	ST	Q9BZY5|Q9BZY5/387-563	4.4	Q19705|ARFM_CAEEL/1-196	8.4
G-alpha_GuKc_merged_pruned	G_alpha	290	TP	ST	P10824|GBI1_RAT/12-352	2.5e-178	O70612|O70612/1-85	2.9
G-alpha_GuKc_merged_pruned	GuKc	208	TP	ST	Q9M683|Q9M683/136-322	4.1e-54	O43863|O43863/1-146	8.9
G-alpha_GuKc_merged_pruned	small_GTPase	27	TP	ST	Q18205|Q18205/120-334	5.6e-91	Q40191|R11A_LOTJA/3-193	6.8

RAB_RAS_merged_pruned	AAA	12	TP	ST	Q9EWW8|Q9EWW8/52-216	1.5	Q56339|FLHF_TREPA/216-394	10
RAB_RAS_merged_pruned	ARF	173	TP	ST	P16587|ARF3_HUMAN/1-180	1.8e-36	Q9H516|Q9H516/1-169	0.011
RAB_RAS_merged_pruned	DYNc	1	TP	ST	P32266|MGM1_YEAST/212-445	7.2
RAB_RAS_merged_pruned	G_alpha	93	TP	ST	P51875|GB0_CAEEL/12-352	0.06	P34042|GBA4_DICDI/11-345	9.9
RAB_RAS_merged_pruned	RAB	598	TP	ST	O18339|O18339/22-187	1.3e-95	Q39859|Q39859/1-113	9.1e-32
RAB_RAS_merged_pruned	RAN	58	TP	ST	P17080|RAN_HUMAN/16-216	4.9e-65	Q9UDJ5|Q9UDJ5/1-131	2.3e-05
RAB_RAS_merged_pruned	RAS	213	TP	ST	P34729|RAS1_PHYPO/1-167	2e-89	Q15282|Q15282/1-96	4e-11
RAB_RAS_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	1e-68	BAB55013|BAB55013/24-152	1.5e-09
RAB_RAS_merged_pruned	SAR	34	TP	ST	Q9P4C8|SAR1_PICPA/4-190	1.9e-05	Q9H029|Q9H029/1-129	1.9
RAB_RAS_merged_pruned	small_GTPase	398	TP	ST	Q16948|Q16948/10-205	3.8e-94	Q9UDJ0|Q9UDJ0/1-83	8.9

ras+SRP54	AAA	152	TP	ST	P37105|SR54_BACSU/100-302	7.4e-32	Q9ZDZ0|SR54_RICPR/101-248	9.6
ras+SRP54	ARF	158	TP	ST	O18237|O18237/4-185	0.00041	P40940|ARF3_ARATH/1-180	9
ras+SRP54	RAB	598	TP	ST	O24112|O24112/9-172	1.5e-73	O60795|O60795/3-132	1.2e-07
ras+SRP54	RAN	57	TP	ST	P32835|GSP1_YEAST/18-219	1.4e-30	Q42161|Q42161/6-114	0.015
ras+SRP54	RAS	213	TP	ST	P34729|RAS1_PHYPO/1-167	9.7e-68	P08644|RASK_RAT/1-96	0.00033
ras+SRP54	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	1.2e-55	O19018|O19018/7-133	8e-05
ras+SRP54	SAR	27	TP	ST	P78976|SAR1_TRIRE/4-189	0.086	Q23445|SAR1_CAEEL/5-193	7.3
ras+SRP54	small_GTPase	227	TP	ST	Q9LGG3|Q9LGG3/142-329	9.9e-75	O67509|O67509/1-185	9

RAN_GuKc_merged_pruned	AAA	2	TP	ST	Q9X215|KGUA_THEMA/2-192	2.4e-53	AAK75455|AAK75455/381-574	4.5
RAN_GuKc_merged_pruned	ARF	7	TP	ST	P40617|ARL4_HUMAN/1-190	0.2	AAH00043|AAH00043/1-191	8.2
RAN_GuKc_merged_pruned	GuKc	218	TP	ST	P93757|P93757/136-322	5e-86	Q9WVQ1|Q9WVQ1/1-127	2.3
RAN_GuKc_merged_pruned	RAB	590	TP	ST	P20336|RB3A_HUMAN/23-186	5.6e-40	O00407|O00407/15-177	7.7
RAN_GuKc_merged_pruned	RAN	55	TP	ST	P41916|RAN1_ARATH/19-220	3.2e-24	P38543|RAN_GIALA/12-226	0.57
RAN_GuKc_merged_pruned	RAS	213	TP	ST	P10114|RAP2_HUMAN/1-167	2.1e-42	Q15282|Q15282/1-96	3.9
RAN_GuKc_merged_pruned	RHO	233	TP	ST	P06749|RHOA_HUMAN/8-181	8.2e-42	O19018|O19018/7-133	2.8
RAN_GuKc_merged_pruned	small_GTPase	89	TP	ST	Q9BSI1|Q9BSI1/7-206	1.5e-36	Q9NXU5|Q9NXU5/9-198	10

RHO_G-alpha_merged_pruned	AAA	1	TP	ST	AAK74956|AAK74956/30-217	5.3
RHO_G-alpha_merged_pruned	ARF	170	TP	ST	Q94650|ARF_PLAFA/1-180	1.5e-08	Q9HEQ4|Q9HEQ4/1-93	0.84
RHO_G-alpha_merged_pruned	G_alpha	294	TP	ST	P10824|GBI1_RAT/12-352	3.4e-199	Q99061|Q99061/1-128	0.098
RHO_G-alpha_merged_pruned	RAB	598	TP	ST	P20336|RB3A_HUMAN/23-186	4e-41	O60795|O60795/3-132	1.7
RHO_G-alpha_merged_pruned	RAN	57	TP	ST	P17080|RAN_HUMAN/16-216	5.1e-31	O13494|O13494/1-103	0.0011
RHO_G-alpha_merged_pruned	RAS	213	TP	ST	P08642|RASH_CHICK/1-166	1.3e-35	O08814|O08814/1-109	0.0032
RHO_G-alpha_merged_pruned	RHO	238	TP	ST	P06749|RHOA_HUMAN/8-181	2e-56	Q9DAK3|Q9DAK3/17-210	6.2e-07
RHO_G-alpha_merged_pruned	SAR	32	TP	ST	Q9SDK4|Q9SDK4/4-192	0.0042	Q9NFN8|Q9NFN8/4-196	2
RHO_G-alpha_merged_pruned	small_GTPase	275	TP	ST	Q18205|Q18205/120-334	5.1e-98	Q9W4P3|Q9W4P3/6-118	8.4

G-alpha+SRP54	AAA	165	TP	ST	P37105|SR54_BACSU/100-302	1.4e-60	Q9X009|Q9X009/171-317	0.48
G-alpha+SRP54	ARF	145	TP	ST	P40994|ARF3_YEAST/1-181	1.6e-05	Q9NIW6|Q9NIW6/1-184	8.6
G-alpha+SRP54	G_alpha	294	TP	ST	O13011|O13011/13-353	2.9e-216	P34044|GBA6_DICDI/1-153	7.8
G-alpha+SRP54	SAR	24	TP	ST	O80489|O80489/4-192	0.063	Q01475|SAR1_SCHPO/4-190	9.2
G-alpha+SRP54	small_GTPase	39	TP	ST	O13055|O13055/120-335	3.1e-103	P34728|ARF_CRYNE/17-150	9.7

RHO_KISc_merged_pruned	KISc	443	TP	ST	P46869|FL10_CHLRE/8-361	8.4e-184	Q99PT8|Q99PT8/2-138	0.9
RHO_KISc_merged_pruned	RAB	252	TP	ST	P25228|RAB3_DROME/22-185	0.00059	Q9C820|Q9C820/9-179	10
RHO_KISc_merged_pruned	RAN	53	TP	ST	P17080|RAN_HUMAN/16-216	0.0012	P38543|RAN_GIALA/12-226	7.8
RHO_KISc_merged_pruned	RAS	152	TP	ST	P08642|RASH_CHICK/1-166	0.00013	Q9YH09|Q9YH09/12-179	7.2
RHO_KISc_merged_pruned	RHO	236	TP	ST	P01122|RHO_APLCA/8-181	5.3e-08	Q9GPR2|RACI_DICDI/8-184	8.8
RHO_KISc_merged_pruned	small_GTPase	25	TP	ST	Q9D9Y0|Q9D9Y0/1-172	3.2e-05	Q9XXA4|Q9XXA4/186-383	5.2