Name
addMetaGenomeCollection.pl - Wrapper script to add a metagenome collection to Smash
Synopsis
addMetaGenomeCollection.pl [options]
Options
--title(required)- A short title to identity this collection. We recommend using something short, like under 8 characters, since this will be used in analysis results and displays. Long names will make your figures look ugly!
--description(required)- A brief description of this metagenome.
--remove,--unload,--wipeout- Remove this collection from Smash (requires
--collection) --collection- collection to be removed.
--help- Prints this manual.
Description
addMetaGenome.pl is a wrapper script to add a metagenome to a collection in Smash.
A typical use of addMetaGenome.pl is like this:
addMetaGenomeCollection.pl --title=Pub2008 \
--description="Collection of metagenomes published before 2008"
If you are working with human gut metagenomes like we are, you could use
addMetaGenomeCollection.pl --title=Human_Gut \
--description="Collection of human gut metagenomes from US, Japan, France and Italy"
