SmashCommunity - Metagenomic Analysis and Annotation Tool

Useful links to external web pages

Software supported by SmashCommunity

Posted on May 1, 2010

Sequence vector and quality trimming

lucy

Sequence assembly

Gene prediction

Keywords: software, setup

Functional databases

Posted on May 1, 2010

EMBL

Kyoto University

KEGG

Keywords: database, protein, functional, annotation

Microbial reference genomes

Posted on May 1, 2010

NCBI

NCBI Complete Microbial Genomes

NIH Human Microbiome Project

MetaHIT

Wellcome Trust Sanger Institute

Keywords: genomes, draft, assembly, reference sequences

About SmashCommunity

SmashCommunity is part of the SMASH family of tools. Currently it consists of SmashCommunity for metagenomic annotation and analysis (including comparative metagenomic analysis), and SmashCell for high-throughput single-cell amplified microbial genomes
Latest news