initSmash.pl - Wrapper script to initialize the Smash environment.
initSmash.pl [options]
--helpinitSmash.pl is a wrapper script to initialize the Smash environment. It parses the Smash config file and initializes the data directory and the databases. Please see "Configure SMASH" section of the installation manual for the config file specification and where to place it.
SmashCommunity is part of the SMASH family of tools. Currently it consists of SmashCommunity for metagenomic annotation and analysis (including comparative metagenomic analysis), and SmashCell for high-throughput single-cell amplified microbial genomes
SmashCommunity is licensed under Creative Commons License.
Please cite us if you use SmashCommunity for your publications:
Arumugam, M., Harrington, E. D., Foerstner, K. U., Raes, J. and P. Bork. (2010) SmashCommunity: A metagenomic annotation and analysis tool, Bioinformatics, 26, 2977-8.